Wall clock time and date at job start Fri Apr 10 2020 17:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46911 * 2 1 4 4 C 1.50705 * 109.47194 * 120.00146 * 2 1 3 5 5 O 1.20824 * 119.99641 * 120.00374 * 4 2 1 6 6 O 1.34231 * 119.99866 * 299.99931 * 4 2 1 7 7 C 1.53000 * 109.46920 * 240.00072 * 2 1 3 8 8 N 1.46500 * 115.55095 * 302.49068 * 7 2 1 9 9 S 1.65600 * 119.99619 * 160.22507 * 8 7 2 10 10 O 1.42102 * 106.40695 * 311.00080 * 9 8 7 11 11 O 1.42103 * 106.40124 * 178.08377 * 9 8 7 12 12 N 1.65592 * 107.21954 * 64.54525 * 9 8 7 13 13 C 1.46510 * 119.99734 * 256.15267 * 12 9 8 14 14 C 1.46495 * 120.00294 * 76.15431 * 12 9 8 15 15 C 1.50707 * 109.47102 * 95.00341 * 14 12 9 16 16 H 1.07995 * 119.99731 * 359.97438 * 15 14 12 17 17 C 1.37873 * 119.99942 * 179.97438 * 15 14 12 18 18 N 1.31515 * 119.99894 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00056 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46983 * 90.00311 * 19 17 15 21 21 H 1.48502 * 109.47064 * 210.00099 * 19 17 15 22 22 H 1.48498 * 109.47049 * 330.00155 * 19 17 15 23 23 C 1.53005 * 117.51766 * 88.20048 * 7 2 1 24 24 C 1.53002 * 117.49717 * 156.82857 * 7 2 1 25 25 H 1.09004 * 109.47237 * 185.25647 * 1 2 3 26 26 H 1.08998 * 109.47558 * 305.24947 * 1 2 3 27 27 H 1.09000 * 109.47613 * 65.25599 * 1 2 3 28 28 H 0.96694 * 116.99668 * 180.02562 * 6 4 2 29 29 H 0.96995 * 120.00194 * 340.23372 * 8 7 2 30 30 H 1.08996 * 109.47396 * 275.03623 * 13 12 9 31 31 H 1.09000 * 109.46800 * 35.03560 * 13 12 9 32 32 H 1.08999 * 109.46992 * 155.03106 * 13 12 9 33 33 H 1.08998 * 109.47056 * 214.99779 * 14 12 9 34 34 H 1.08995 * 109.47231 * 335.00125 * 14 12 9 35 35 H 0.97004 * 119.99707 * 179.97438 * 18 17 15 36 36 H 1.08998 * 117.49200 * 214.96659 * 23 7 2 37 37 H 1.08998 * 117.49758 * 359.97438 * 23 7 2 38 38 H 1.09003 * 117.49821 * 359.97156 * 24 7 2 39 39 H 1.08999 * 117.50226 * 144.97305 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7270 -1.6928 1.1195 6 8 1.7081 -0.2519 2.4496 7 6 2.0399 -0.7212 -1.2493 8 7 1.5811 -2.1029 -1.4127 9 16 1.6366 -2.8229 -2.9030 10 8 1.0402 -1.9087 -3.8129 11 8 1.1732 -4.1541 -2.7230 12 7 3.2316 -2.9372 -3.3331 13 6 3.7917 -2.0127 -4.3221 14 6 4.0827 -3.9627 -2.7247 15 6 4.1268 -5.1746 -3.6195 16 1 3.5756 -5.1804 -4.5482 17 6 4.8707 -6.2758 -3.2524 18 7 5.5415 -6.2688 -2.1213 19 14 4.9248 -7.7782 -4.3612 20 1 6.0517 -7.6461 -5.3192 21 1 5.1181 -8.9967 -3.5346 22 1 3.6476 -7.8862 -5.1111 23 6 2.2354 0.1130 -2.5169 24 6 3.4517 -0.3838 -1.7329 25 1 -0.3634 -1.0234 0.0942 26 1 -0.3634 0.5931 0.8392 27 1 -0.3634 0.4301 -0.9333 28 1 2.0541 -0.7406 3.2088 29 1 1.2448 -2.5959 -0.6481 30 1 3.6014 -2.3946 -5.3251 31 1 3.3238 -1.0346 -4.2109 32 1 4.8665 -1.9211 -4.1661 33 1 5.0910 -3.5689 -2.5966 34 1 3.6759 -4.2430 -1.7532 35 1 6.0647 -7.0438 -1.8629 36 1 2.0225 -0.3663 -3.4724 37 1 2.0002 1.1759 -2.4611 38 1 4.0170 0.3523 -1.1614 39 1 4.0393 -1.1899 -2.1724 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593273064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:34 Heat of formation + Delta-G solvation = -153.306376 kcal Electronic energy + Delta-G solvation = -25153.801067 eV Core-core repulsion = 21416.811475 eV Total energy + Delta-G solvation = -3736.989592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56038 -39.63437 -38.15360 -37.28824 -36.92477 -36.91208 -34.57143 -33.46002 -33.04249 -29.68593 -26.82735 -26.19957 -24.26985 -23.68640 -23.25849 -21.17221 -20.08323 -19.05499 -18.95708 -18.72872 -18.31745 -17.74501 -17.11049 -16.63158 -16.59491 -15.96719 -15.58040 -15.40312 -15.00891 -14.67186 -14.37788 -14.13167 -13.92628 -13.83386 -13.29964 -13.27138 -13.15869 -13.06834 -12.97075 -12.75143 -12.69657 -12.50251 -12.41813 -12.35976 -12.30661 -12.00515 -11.78525 -11.69533 -11.51578 -11.24301 -10.61254 -9.99773 -9.79777 -8.21328 -6.33601 -0.36030 1.27426 1.36812 1.39561 1.50552 1.91475 2.02545 2.38566 2.50407 2.95186 3.08787 3.33796 3.47866 3.53190 3.86026 3.97916 4.11920 4.26787 4.40341 4.58538 4.61041 4.75000 4.84373 4.90751 4.95007 5.00602 5.07664 5.15771 5.23189 5.27932 5.31734 5.42822 5.66702 5.67893 5.83004 6.03672 6.10172 6.74990 7.04901 7.35240 8.86099 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.005187 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.083747 B = 5396.859327 C = 5972.905473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 H 0.160 0.840 4 C 0.477 3.523 5 O -0.539 6.539 6 O -0.509 6.509 7 C 0.111 3.889 8 N -1.083 6.083 9 S 2.799 3.201 10 O -0.990 6.990 11 O -1.015 7.015 12 N -1.000 6.000 13 C 0.087 3.913 14 C 0.279 3.721 15 C -0.546 4.546 16 H 0.052 0.948 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.275 1.275 23 C -0.196 4.196 24 C -0.211 4.211 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.425 0.575 29 H 0.416 0.584 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.006 0.994 35 H 0.267 0.733 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 19.243 6.050 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.056 4.056 3 H 0.177 0.823 4 C 0.320 3.680 5 O -0.428 6.428 6 O -0.322 6.322 7 C 0.021 3.979 8 N -0.840 5.840 9 S 2.807 3.193 10 O -0.973 6.973 11 O -0.999 6.999 12 N -0.842 5.842 13 C -0.058 4.058 14 C 0.156 3.844 15 C -0.586 4.586 16 H 0.070 0.930 17 C -0.190 4.190 18 N -0.566 5.566 19 Si 0.783 3.217 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.200 1.200 23 C -0.233 4.233 24 C -0.250 4.250 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.286 0.714 29 H 0.251 0.749 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.045 0.955 34 H 0.024 0.976 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.167 0.833 38 H 0.143 0.857 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.763 18.868 5.124 21.037 hybrid contribution 0.818 -1.946 0.759 2.243 sum -6.945 16.922 5.883 19.215 Atomic orbital electron populations 1.21788 0.90077 1.02987 1.05173 1.20735 0.99401 1.00735 0.84739 0.82273 1.23771 0.76398 0.82224 0.85652 1.90848 1.36826 1.27474 1.87614 1.84461 1.72029 1.59010 1.16707 1.20197 0.99113 0.81691 0.96914 1.55191 1.79089 1.21602 1.28161 1.01253 0.73019 0.71868 0.73153 1.93465 1.75799 1.64519 1.63531 1.93572 1.81016 1.38960 1.86391 1.57500 1.29517 1.43453 1.53736 1.21773 1.00938 0.92244 0.90825 1.18527 0.89889 0.84609 0.91401 1.21838 1.29088 1.00918 1.06718 0.92956 1.25782 0.94918 1.01511 0.96748 1.70036 1.31701 1.31599 1.23260 0.85548 0.78651 0.78613 0.78849 1.18854 1.20399 1.19983 1.24577 1.00068 1.03204 0.95494 1.24070 0.91920 1.04744 1.04273 0.93438 0.88785 0.89376 0.71371 0.74944 0.93576 0.88809 0.90209 0.95470 0.97600 0.92429 0.86164 0.83278 0.85707 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 71.98 0.64 -1.44 16 2 C -0.04 -0.62 2.71 -11.54 -0.03 -0.65 16 3 H 0.16 1.55 8.11 -2.39 -0.02 1.53 16 4 C 0.48 10.28 7.42 71.24 0.53 10.81 16 5 O -0.54 -17.07 15.87 21.97 0.35 -16.73 16 6 O -0.51 -7.46 13.35 -51.43 -0.69 -8.14 16 7 C 0.11 2.76 1.55 3.61 0.01 2.76 16 8 N -1.08 -35.58 5.39 -152.20 -0.82 -36.40 16 9 S 2.80 114.48 5.48 -56.49 -0.31 114.17 16 10 O -0.99 -38.18 14.06 -128.00 -1.80 -39.97 16 11 O -1.02 -52.08 17.64 -128.00 -2.26 -54.33 16 12 N -1.00 -42.54 1.87 -543.22 -1.02 -43.55 16 13 C 0.09 2.95 8.50 127.77 1.09 4.04 16 14 C 0.28 14.77 5.09 85.64 0.44 15.21 16 15 C -0.55 -32.08 9.38 25.60 0.24 -31.84 16 16 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 17 C 0.01 0.56 5.46 84.65 0.46 1.02 16 18 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 19 Si 0.96 46.08 29.54 68.60 2.03 48.11 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 23 C -0.20 -4.19 8.47 30.60 0.26 -3.93 16 24 C -0.21 -5.15 9.21 30.60 0.28 -4.87 16 25 H 0.05 0.85 7.91 -2.39 -0.02 0.83 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.42 3.49 9.10 -74.06 -0.67 2.81 16 29 H 0.42 13.69 7.93 -96.75 -0.77 12.92 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 2.59 4.26 -2.39 -0.01 2.58 16 32 H 0.08 2.54 7.89 -2.39 -0.02 2.52 16 33 H 0.03 1.46 7.94 -2.39 -0.02 1.44 16 34 H 0.01 0.35 7.96 -2.39 -0.02 0.33 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.12 3.21 2.98 -2.39 -0.01 3.20 16 37 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.09 2.91 4.89 -2.39 -0.01 2.90 16 Total: -1.00 -80.62 330.32 -0.65 -81.27 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.33 Total: 20.44 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 3.91 Total: -8.89 kcal Atomic # 7 Polarization: -134.37 SS G_CDS: -1.55 Total: -135.92 kcal Atomic # 8 Polarization: -114.78 SS G_CDS: -4.39 Total: -119.18 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: 114.48 SS G_CDS: -0.31 Total: 114.17 kcal Total: -80.62 -0.65 -81.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593273064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.034 kcal (2) G-P(sol) polarization free energy of solvation -80.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds