Wall clock time and date at job start Fri Apr 10 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99758 * 2 1 4 4 O 1.20829 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99942 * 179.97438 * 3 2 1 6 6 H 1.09004 * 112.85031 * 311.19719 * 5 3 2 7 7 C 1.54044 * 113.61858 * 82.50548 * 5 3 2 8 8 C 1.53784 * 86.98483 * 139.98039 * 7 5 3 9 9 H 1.09002 * 113.61672 * 219.98333 * 8 7 5 10 10 N 1.46493 * 113.61484 * 89.16231 * 8 7 5 11 11 S 1.65599 * 120.00048 * 115.86732 * 10 8 7 12 12 O 1.42102 * 106.40395 * 311.45874 * 11 10 8 13 13 O 1.42097 * 106.40322 * 178.53954 * 11 10 8 14 14 N 1.65600 * 107.22069 * 64.99840 * 11 10 8 15 15 C 1.46499 * 120.00084 * 90.00328 * 14 11 10 16 16 C 1.46499 * 119.99691 * 270.00182 * 14 11 10 17 17 C 1.50710 * 109.47211 * 264.99811 * 16 14 11 18 18 H 1.08006 * 119.99595 * 0.02562 * 17 16 14 19 19 C 1.37871 * 120.00111 * 180.02562 * 17 16 14 20 20 N 1.31515 * 119.99826 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00161 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47204 * 89.99701 * 21 19 17 23 23 H 1.48500 * 109.47326 * 209.99911 * 21 19 17 24 24 H 1.48504 * 109.46708 * 329.99982 * 21 19 17 25 25 C 1.53777 * 113.61347 * 180.02562 * 5 3 2 26 26 H 1.09001 * 109.46563 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47031 * 299.99853 * 1 2 3 28 28 H 1.08997 * 109.46666 * 60.00296 * 1 2 3 29 29 H 1.09000 * 113.61305 * 25.47798 * 7 5 3 30 30 H 1.09000 * 113.70093 * 254.49261 * 7 5 3 31 31 H 0.97004 * 119.99978 * 295.86040 * 10 8 7 32 32 H 1.09002 * 109.47391 * 89.99859 * 15 14 11 33 33 H 1.09001 * 109.46813 * 329.99915 * 15 14 11 34 34 H 1.09004 * 109.47041 * 210.00042 * 15 14 11 35 35 H 1.08992 * 109.47737 * 24.99864 * 16 14 11 36 36 H 1.09002 * 109.47072 * 145.00060 * 16 14 11 37 37 H 0.97007 * 119.99675 * 179.97438 * 20 19 17 38 38 H 1.09000 * 113.61822 * 105.47249 * 25 5 3 39 39 H 1.09003 * 113.69259 * 334.57589 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0234 0.6365 0.7567 7 6 4.1929 1.1231 -1.3985 8 6 5.1814 2.2267 -0.9865 9 1 5.3978 2.9387 -1.7829 10 7 6.3905 1.7180 -0.3343 11 16 7.8681 1.9238 -1.0530 12 8 7.7184 1.5092 -2.4040 13 8 8.8266 1.3597 -0.1686 14 7 8.1707 3.5514 -1.0943 15 6 8.8672 4.1954 0.0221 16 6 7.7420 4.3471 -2.2472 17 6 8.8841 4.4748 -3.2222 18 1 9.8342 4.0093 -3.0048 19 6 8.7162 5.1857 -4.3914 20 7 7.5592 5.7521 -4.6562 21 14 10.1316 5.3433 -5.6002 22 1 10.0829 4.2188 -6.5688 23 1 10.0176 6.6312 -6.3308 24 1 11.4196 5.3053 -4.8619 25 6 4.1077 2.7143 0.0011 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 3.5258 1.4151 -2.2096 30 1 4.6643 0.1545 -1.5647 31 1 6.3255 1.2606 0.5187 32 1 9.9417 4.1759 -0.1601 33 1 8.6455 3.6607 0.9457 34 1 8.5326 5.2290 0.1114 35 1 6.9008 3.8554 -2.7355 36 1 7.4383 5.3387 -1.9115 37 1 7.4411 6.2526 -5.4787 38 1 4.5104 3.0290 0.9639 39 1 3.4182 3.4417 -0.4275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595398095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:53 Heat of formation + Delta-G solvation = -137.390083 kcal Electronic energy + Delta-G solvation = -23917.513022 eV Core-core repulsion = 20181.213613 eV Total energy + Delta-G solvation = -3736.299409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95597 -38.86871 -36.64166 -36.49653 -35.51858 -35.17556 -32.65978 -32.44052 -28.52245 -27.80668 -25.90284 -25.81086 -25.08422 -22.32633 -21.67839 -19.74116 -19.16947 -17.93437 -17.34631 -16.85111 -16.60869 -16.50398 -16.24299 -15.98780 -15.15424 -14.54496 -14.30749 -14.13489 -13.51970 -13.42330 -13.26100 -13.02465 -12.56630 -12.52212 -12.39564 -12.17275 -12.08947 -11.66565 -11.47936 -11.25911 -11.18576 -11.12434 -11.02348 -10.91283 -10.84596 -10.71512 -10.53440 -10.28756 -10.02925 -9.77993 -9.37195 -8.44846 -8.09377 -6.07783 -4.11458 1.16874 2.01161 2.53600 3.32737 3.38668 3.41374 3.46055 4.08529 4.19993 4.31058 4.44282 4.61656 4.70759 4.84469 4.86442 4.93253 5.04171 5.22243 5.26683 5.36117 5.49944 5.57364 5.62101 5.74708 5.85461 5.87685 6.05367 6.18195 6.26043 6.37563 6.49902 7.05132 7.19923 7.36506 7.57142 7.57719 7.89764 8.18512 8.90681 9.53959 11.00721 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.003902 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.595307 B = 7173.712007 C = 7933.692094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.471 3.529 4 O -0.506 6.506 5 C -0.113 4.113 6 H 0.124 0.876 7 C -0.132 4.132 8 C 0.133 3.867 9 H 0.118 0.882 10 N -1.117 6.117 11 S 2.782 3.218 12 O -0.959 6.959 13 O -0.997 6.997 14 N -0.997 5.997 15 C 0.109 3.891 16 C 0.255 3.745 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.062 3.938 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.123 4.123 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.408 0.592 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.085 0.915 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 -8.547 11.684 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.314 3.686 4 O -0.393 6.393 5 C -0.133 4.133 6 H 0.142 0.858 7 C -0.171 4.171 8 C 0.024 3.976 9 H 0.136 0.864 10 N -0.872 5.872 11 S 2.789 3.211 12 O -0.942 6.942 13 O -0.981 6.981 14 N -0.840 5.840 15 C -0.037 4.037 16 C 0.134 3.866 17 C -0.568 4.568 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.162 4.162 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.240 0.760 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.803 -8.721 11.031 17.733 hybrid contribution 0.117 0.268 -0.146 0.327 sum -10.686 -8.454 10.885 17.439 Atomic orbital electron populations 1.23261 0.76604 1.03595 1.02531 1.86539 1.23254 1.33728 1.84021 1.23755 0.91859 0.81187 0.71784 1.90666 1.67016 1.36412 1.45189 1.22722 0.86759 1.01597 1.02178 0.85844 1.23459 0.97978 1.01691 0.93992 1.21552 0.84492 0.95803 0.95715 0.86407 1.56176 1.23112 1.72567 1.35377 1.02027 0.72462 0.73272 0.73355 1.93641 1.85679 1.80390 1.34533 1.93552 1.58817 1.77926 1.67796 1.57635 1.70627 1.27585 1.28168 1.21201 0.97166 0.98431 0.86931 1.19128 0.95528 0.91088 0.80900 1.21477 0.98604 1.32996 1.03732 0.92181 1.24920 0.96028 0.95251 0.97776 1.69910 1.23226 1.34664 1.25669 0.86517 0.82441 0.77435 0.81182 1.20405 1.21165 1.19825 1.23377 0.97386 0.94172 1.01299 0.88197 0.92000 0.91850 0.88323 0.89149 0.75962 0.93149 0.92959 0.91446 0.94466 0.94606 0.92672 0.89651 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.78 10.57 -39.25 -0.41 -4.20 16 3 C 0.47 5.50 7.49 36.01 0.27 5.77 16 4 O -0.51 -7.17 15.65 -18.75 -0.29 -7.46 16 5 C -0.11 -1.15 4.09 -90.82 -0.37 -1.52 16 6 H 0.12 0.99 8.13 -51.93 -0.42 0.57 16 7 C -0.13 -1.51 7.45 -25.78 -0.19 -1.70 16 8 C 0.13 1.73 4.45 -67.10 -0.30 1.43 16 9 H 0.12 1.78 6.49 -51.93 -0.34 1.45 16 10 N -1.12 -14.88 5.79 -4.18 -0.02 -14.91 16 11 S 2.78 52.07 6.00 -107.50 -0.64 51.42 16 12 O -0.96 -21.91 16.87 -57.17 -0.96 -22.88 16 13 O -1.00 -19.90 17.21 -57.17 -0.98 -20.89 16 14 N -1.00 -19.75 3.23 -123.05 -0.40 -20.15 16 15 C 0.11 1.81 10.33 59.85 0.62 2.43 16 16 C 0.26 6.12 5.03 -5.19 -0.03 6.09 16 17 C -0.53 -14.58 9.38 -34.44 -0.32 -14.90 16 18 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 20 N -0.90 -25.58 13.29 55.43 0.74 -24.84 16 21 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.12 -1.34 7.19 -25.90 -0.19 -1.53 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.41 4.20 8.81 -34.47 -0.30 3.89 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 34 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 35 H 0.04 0.93 6.15 -51.93 -0.32 0.61 16 36 H 0.04 0.87 7.96 -51.93 -0.41 0.46 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 1.28 7.44 -51.93 -0.39 0.89 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -34.81 344.64 -7.85 -42.66 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.50 Total: 0.36 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 0.46 Total: -0.95 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.32 Total: -59.90 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -2.66 Total: -55.42 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.64 Total: 51.42 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.81 -7.85 -42.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595398095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.730 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds