Wall clock time and date at job start Fri Apr 10 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99758 * 2 1 4 4 O 1.20829 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99942 * 179.97438 * 3 2 1 6 6 H 1.09004 * 112.85031 * 311.19719 * 5 3 2 7 7 C 1.54044 * 113.61858 * 82.50548 * 5 3 2 8 8 C 1.53784 * 86.98483 * 139.98039 * 7 5 3 9 9 H 1.09002 * 113.61672 * 219.98333 * 8 7 5 10 10 N 1.46493 * 113.61484 * 89.16231 * 8 7 5 11 11 S 1.65599 * 120.00048 * 115.86732 * 10 8 7 12 12 O 1.42102 * 106.40395 * 311.45874 * 11 10 8 13 13 O 1.42097 * 106.40322 * 178.53954 * 11 10 8 14 14 N 1.65600 * 107.22069 * 64.99840 * 11 10 8 15 15 C 1.46499 * 120.00084 * 90.00328 * 14 11 10 16 16 C 1.46499 * 119.99691 * 270.00182 * 14 11 10 17 17 C 1.50710 * 109.47211 * 264.99811 * 16 14 11 18 18 H 1.08006 * 119.99595 * 0.02562 * 17 16 14 19 19 C 1.37871 * 120.00111 * 180.02562 * 17 16 14 20 20 N 1.31515 * 119.99826 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00161 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47204 * 89.99701 * 21 19 17 23 23 H 1.48500 * 109.47326 * 209.99911 * 21 19 17 24 24 H 1.48504 * 109.46708 * 329.99982 * 21 19 17 25 25 C 1.53777 * 113.61347 * 180.02562 * 5 3 2 26 26 H 1.09001 * 109.46563 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47031 * 299.99853 * 1 2 3 28 28 H 1.08997 * 109.46666 * 60.00296 * 1 2 3 29 29 H 1.09000 * 113.61305 * 25.47798 * 7 5 3 30 30 H 1.09000 * 113.70093 * 254.49261 * 7 5 3 31 31 H 0.97004 * 119.99978 * 295.86040 * 10 8 7 32 32 H 1.09002 * 109.47391 * 89.99859 * 15 14 11 33 33 H 1.09001 * 109.46813 * 329.99915 * 15 14 11 34 34 H 1.09004 * 109.47041 * 210.00042 * 15 14 11 35 35 H 1.08992 * 109.47737 * 24.99864 * 16 14 11 36 36 H 1.09002 * 109.47072 * 145.00060 * 16 14 11 37 37 H 0.97007 * 119.99675 * 179.97438 * 20 19 17 38 38 H 1.09000 * 113.61822 * 105.47249 * 25 5 3 39 39 H 1.09003 * 113.69259 * 334.57589 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0234 0.6365 0.7567 7 6 4.1929 1.1231 -1.3985 8 6 5.1814 2.2267 -0.9865 9 1 5.3978 2.9387 -1.7829 10 7 6.3905 1.7180 -0.3343 11 16 7.8681 1.9238 -1.0530 12 8 7.7184 1.5092 -2.4040 13 8 8.8266 1.3597 -0.1686 14 7 8.1707 3.5514 -1.0943 15 6 8.8672 4.1954 0.0221 16 6 7.7420 4.3471 -2.2472 17 6 8.8841 4.4748 -3.2222 18 1 9.8342 4.0093 -3.0048 19 6 8.7162 5.1857 -4.3914 20 7 7.5592 5.7521 -4.6562 21 14 10.1316 5.3433 -5.6002 22 1 10.0829 4.2188 -6.5688 23 1 10.0176 6.6312 -6.3308 24 1 11.4196 5.3053 -4.8619 25 6 4.1077 2.7143 0.0011 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 3.5258 1.4151 -2.2096 30 1 4.6643 0.1545 -1.5647 31 1 6.3255 1.2606 0.5187 32 1 9.9417 4.1759 -0.1601 33 1 8.6455 3.6607 0.9457 34 1 8.5326 5.2290 0.1114 35 1 6.9008 3.8554 -2.7355 36 1 7.4383 5.3387 -1.9115 37 1 7.4411 6.2526 -5.4787 38 1 4.5104 3.0290 0.9639 39 1 3.4182 3.4417 -0.4275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595398095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:53 Heat of formation + Delta-G solvation = -163.543698 kcal Electronic energy + Delta-G solvation = -23918.647128 eV Core-core repulsion = 20181.213613 eV Total energy + Delta-G solvation = -3737.433515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85546 -39.80904 -38.22318 -37.42380 -37.18707 -36.81086 -34.48180 -33.78858 -29.65162 -29.25699 -26.82745 -26.77317 -26.64312 -24.19139 -22.62788 -20.87822 -20.32851 -19.18426 -18.68290 -18.22521 -18.18646 -17.64831 -17.33251 -17.27779 -16.67265 -16.18457 -15.29545 -15.13710 -15.05730 -14.88374 -14.35324 -14.13562 -13.96642 -13.81246 -13.63003 -13.41483 -13.27398 -13.10440 -13.01113 -12.97085 -12.94416 -12.50176 -12.45016 -12.36551 -11.95358 -11.81649 -11.79250 -11.76657 -11.67400 -11.28223 -10.59667 -10.46576 -9.77776 -8.18486 -6.29366 -0.32322 1.11330 1.40292 1.42932 1.51792 1.77017 2.03974 2.41941 2.66629 3.12703 3.28917 3.38589 3.47503 3.72660 3.82444 4.00053 4.12214 4.27469 4.31807 4.33414 4.58364 4.70271 4.72490 4.74153 4.79344 4.89051 4.94004 5.00350 5.09765 5.21743 5.33176 5.37832 5.49703 5.71903 5.88967 6.13665 6.21196 6.70826 6.78496 7.39221 8.88606 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.003902 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.595307 B = 7173.712007 C = 7933.692094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.101 4.101 6 H 0.154 0.846 7 C -0.132 4.132 8 C 0.121 3.879 9 H 0.091 0.909 10 N -1.093 6.093 11 S 2.800 3.200 12 O -1.005 7.005 13 O -1.008 7.008 14 N -1.004 6.004 15 C 0.100 3.900 16 C 0.270 3.730 17 C -0.549 4.549 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.922 5.922 21 Si 0.952 3.048 22 H -0.279 1.279 23 H -0.275 1.275 24 H -0.267 1.267 25 C -0.115 4.115 26 H 0.130 0.870 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.427 0.573 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.023 0.977 36 H 0.030 0.970 37 H 0.267 0.733 38 H 0.105 0.895 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.290 -9.349 12.992 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.120 4.120 6 H 0.171 0.829 7 C -0.172 4.172 8 C 0.012 3.988 9 H 0.109 0.891 10 N -0.854 5.854 11 S 2.807 3.193 12 O -0.988 6.988 13 O -0.992 6.992 14 N -0.845 5.845 15 C -0.046 4.046 16 C 0.146 3.854 17 C -0.589 4.589 18 H 0.068 0.932 19 C -0.186 4.186 20 N -0.561 5.561 21 Si 0.777 3.223 22 H -0.205 1.205 23 H -0.200 1.200 24 H -0.192 1.192 25 C -0.154 4.154 26 H 0.148 0.852 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.264 0.736 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.008 -9.543 12.374 19.115 hybrid contribution 0.107 0.464 -0.502 0.692 sum -10.902 -9.079 11.872 18.499 Atomic orbital electron populations 1.23542 0.75067 1.05625 1.02453 1.86528 1.24818 1.32977 1.83524 1.23971 0.92327 0.81073 0.70915 1.90658 1.67770 1.37412 1.46702 1.22743 0.86050 1.01364 1.01866 0.82887 1.23452 0.97480 1.01237 0.95009 1.21616 0.84616 0.96442 0.96112 0.89055 1.55516 1.21448 1.72438 1.36017 1.01237 0.72998 0.72627 0.72422 1.93584 1.86574 1.81103 1.37570 1.93528 1.60072 1.77979 1.67624 1.57529 1.71391 1.27594 1.28028 1.21447 0.96458 0.99592 0.87069 1.18712 0.93992 0.91067 0.81637 1.21842 0.99207 1.32887 1.04935 0.93220 1.25683 0.98349 0.95091 0.99441 1.69992 1.24672 1.35203 1.26265 0.85647 0.79866 0.77672 0.79087 1.20494 1.19964 1.19179 1.23295 0.96059 0.94657 1.01364 0.85172 0.91798 0.92281 0.88560 0.88576 0.73600 0.93980 0.89602 0.90323 0.95873 0.95240 0.92417 0.87701 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.93 10.57 -51.40 -0.54 -7.47 16 3 C 0.47 10.29 7.49 71.24 0.53 10.82 16 4 O -0.54 -14.75 15.65 21.96 0.34 -14.40 16 5 C -0.10 -1.83 4.09 -10.92 -0.04 -1.88 16 6 H 0.15 1.87 8.13 -2.39 -0.02 1.85 16 7 C -0.13 -2.88 7.45 31.21 0.23 -2.64 16 8 C 0.12 3.04 4.45 45.53 0.20 3.24 16 9 H 0.09 2.85 6.49 -2.39 -0.02 2.83 16 10 N -1.09 -27.35 5.79 -167.15 -0.97 -28.32 16 11 S 2.80 103.25 6.00 -56.49 -0.34 102.91 16 12 O -1.01 -46.55 16.87 -128.00 -2.16 -48.71 16 13 O -1.01 -38.84 17.21 -128.00 -2.20 -41.05 16 14 N -1.00 -39.51 3.23 -543.21 -1.75 -41.26 16 15 C 0.10 3.18 10.33 127.77 1.32 4.50 16 16 C 0.27 13.15 5.03 85.64 0.43 13.58 16 17 C -0.55 -30.72 9.38 25.60 0.24 -30.48 16 18 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 19 C 0.01 0.79 5.46 84.65 0.46 1.25 16 20 N -0.92 -53.20 13.29 21.45 0.28 -52.91 16 21 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 C -0.11 -2.31 7.19 31.13 0.22 -2.09 16 26 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 28 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 29 H 0.10 2.13 8.10 -2.39 -0.02 2.11 16 30 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.43 7.52 8.81 -96.74 -0.85 6.66 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 2.14 7.79 -2.39 -0.02 2.12 16 34 H 0.08 2.31 7.94 -2.38 -0.02 2.29 16 35 H 0.02 1.20 6.15 -2.39 -0.01 1.18 16 36 H 0.03 1.46 7.96 -2.39 -0.02 1.44 16 37 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 2.26 7.44 -2.39 -0.02 2.25 16 Total: -1.00 -74.88 344.64 -0.30 -75.18 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.22 Total: 11.73 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.80 Total: -2.14 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -2.43 Total: -122.50 kcal Atomic # 8 Polarization: -107.07 SS G_CDS: -4.56 Total: -111.63 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 103.25 SS G_CDS: -0.34 Total: 102.91 kcal Total: -74.88 -0.30 -75.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595398095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.364 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds