Wall clock time and date at job start Fri Apr 10 2020 17:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21513 * 119.99898 * 0.28095 * 3 2 1 5 5 C 1.48232 * 120.00016 * 180.27596 * 3 2 1 6 6 C 1.39631 * 119.65369 * 179.73021 * 5 3 2 7 7 C 1.38538 * 119.24418 * 179.73487 * 6 5 3 8 8 C 1.38586 * 118.55561 * 0.52587 * 7 6 5 9 9 C 1.39588 * 119.24353 * 359.73747 * 8 7 6 10 10 C 1.48222 * 119.65287 * 179.97438 * 9 8 7 11 11 O 1.21510 * 119.99746 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00145 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99933 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.46815 * 180.02562 * 13 12 10 15 15 O 1.21293 * 120.00444 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99804 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99869 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00032 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99947 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00226 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99959 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47429 * 90.00215 * 21 19 17 23 23 H 1.48500 * 109.47322 * 210.00391 * 21 19 17 24 24 H 1.48508 * 109.47362 * 330.00201 * 21 19 17 25 25 N 1.32336 * 119.65143 * 0.02562 * 5 3 2 26 26 H 1.09001 * 109.47007 * 179.72339 * 1 2 3 27 27 H 1.09004 * 109.46963 * 299.72135 * 1 2 3 28 28 H 1.08994 * 109.47567 * 59.72287 * 1 2 3 29 29 H 0.97001 * 120.00384 * 180.28447 * 2 1 3 30 30 H 1.07999 * 120.37264 * 0.02562 * 6 5 3 31 31 H 1.08004 * 120.72107 * 180.24403 * 7 6 5 32 32 H 1.07994 * 120.38050 * 179.75239 * 8 7 6 33 33 H 0.97001 * 120.00221 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.47146 * 299.99888 * 13 12 10 35 35 H 1.09002 * 109.47380 * 60.00363 * 13 12 10 36 36 H 0.96997 * 119.99639 * 0.02562 * 16 14 13 37 37 H 0.96995 * 120.00382 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2195 0.0052 5 6 3.6211 1.1673 -0.0062 6 6 4.3119 2.3807 -0.0119 7 6 5.6972 2.3709 -0.0120 8 6 6.3510 1.1490 -0.0177 9 6 5.5989 -0.0269 -0.0174 10 6 6.2888 -1.3388 -0.0240 11 8 7.5029 -1.3866 -0.0292 12 7 5.5694 -2.4785 -0.0244 13 6 6.2513 -3.7751 -0.0303 14 6 5.2276 -4.8810 -0.0301 15 8 4.0448 -4.6126 -0.0249 16 7 5.6265 -6.1685 -0.0345 17 6 4.6952 -7.1746 -0.0338 18 1 3.6420 -6.9355 -0.0300 19 6 5.1063 -8.5019 -0.0378 20 7 4.2137 -9.4663 -0.0366 21 14 6.9279 -8.9153 -0.0451 22 1 7.4156 -9.0277 1.3530 23 1 7.1398 -10.2059 -0.7485 24 1 7.6766 -7.8410 -0.7456 25 7 4.2759 0.0172 -0.0122 26 1 -0.3633 -1.0277 -0.0050 27 1 -0.3633 0.5095 0.8925 28 1 -0.3634 0.5181 -0.8874 29 1 1.9500 -0.8400 -0.0042 30 1 3.7723 3.3163 -0.0113 31 1 6.2556 3.2954 -0.0124 32 1 7.4302 1.1069 -0.0220 33 1 4.6002 -2.4403 -0.0206 34 1 6.8719 -3.8551 -0.9228 35 1 6.8785 -3.8599 0.8571 36 1 6.5724 -6.3831 -0.0375 37 1 4.5007 -10.3928 -0.0398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323525175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:11 Heat of formation + Delta-G solvation = -62.730226 kcal Electronic energy + Delta-G solvation = -23810.895118 eV Core-core repulsion = 19974.682003 eV Total energy + Delta-G solvation = -3836.213115 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13727 -39.77718 -38.91070 -38.18197 -34.92713 -34.67370 -33.91160 -32.95919 -32.03734 -31.81917 -28.17703 -27.44474 -25.17558 -24.44147 -23.77997 -21.19061 -20.55151 -19.74958 -19.04880 -18.40074 -17.87043 -16.43514 -16.37805 -16.00221 -15.84492 -15.62358 -15.43783 -15.09383 -14.98118 -14.51442 -14.43302 -13.99740 -13.64265 -13.60117 -13.16052 -12.92357 -12.57296 -12.44104 -12.41447 -12.22590 -12.16988 -11.27331 -11.01507 -10.67923 -10.41980 -10.24312 -10.10105 -9.89154 -9.73887 -9.64904 -9.30911 -9.00812 -8.82639 -8.34675 -6.44538 -3.97297 0.15671 0.55518 2.21494 2.84457 2.85081 2.96099 2.98101 3.01325 3.10121 3.50293 3.63786 3.65706 4.00034 4.38790 4.42539 4.51527 4.57616 4.60645 5.04052 5.09939 5.10760 5.16153 5.32639 5.50078 5.59443 5.61891 5.67329 5.69874 5.71888 6.05995 6.14401 6.39658 7.00674 7.30943 7.40065 7.63111 7.89902 7.94983 8.15223 8.40730 8.77568 9.25416 9.58303 10.67525 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.003228 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.018319 B = 8672.337401 C =10271.907373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.712 5.712 3 C 0.573 3.427 4 O -0.536 6.536 5 C 0.078 3.922 6 C -0.092 4.092 7 C -0.086 4.086 8 C -0.089 4.089 9 C 0.087 3.913 10 C 0.569 3.431 11 O -0.538 6.538 12 N -0.684 5.684 13 C 0.103 3.897 14 C 0.437 3.563 15 O -0.576 6.576 16 N -0.575 5.575 17 C -0.311 4.311 18 H 0.122 0.878 19 C 0.046 3.954 20 N -0.873 5.873 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.267 1.267 25 N -0.430 5.430 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.417 0.583 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.421 0.579 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.374 0.626 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 20.522 0.046 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.362 5.362 3 C 0.357 3.643 4 O -0.412 6.412 5 C -0.064 4.064 6 C -0.113 4.113 7 C -0.112 4.112 8 C -0.110 4.110 9 C -0.054 4.054 10 C 0.353 3.647 11 O -0.416 6.416 12 N -0.337 5.337 13 C -0.025 4.025 14 C 0.223 3.777 15 O -0.460 6.460 16 N -0.212 5.212 17 C -0.439 4.439 18 H 0.140 0.860 19 C -0.159 4.159 20 N -0.512 5.512 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 N -0.145 5.145 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.254 0.746 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.261 0.739 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.208 0.792 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.625 20.294 0.050 20.359 hybrid contribution 1.641 -0.271 -0.026 1.663 sum 3.266 20.023 0.025 20.287 Atomic orbital electron populations 1.21647 0.78785 1.03092 1.02332 1.45686 1.08122 1.09187 1.73252 1.17827 0.85505 0.84218 0.76737 1.90784 1.68712 1.31293 1.50454 1.21108 0.94311 0.89316 1.01620 1.22325 0.94773 0.99447 0.94775 1.21677 0.93939 0.98689 0.96905 1.22365 1.02763 0.91542 0.94342 1.21137 0.88986 0.94513 1.00788 1.17735 0.86435 0.83028 0.77525 1.90786 1.12764 1.86987 1.51034 1.45538 1.12335 1.04127 1.71749 1.21082 0.95083 0.82599 1.03686 1.19570 0.89372 0.83499 0.85281 1.90543 1.17433 1.82480 1.55593 1.42113 1.08447 1.05362 1.65325 1.19440 0.91698 0.84028 1.48738 0.86034 1.25067 0.98396 0.95317 0.97088 1.69611 1.33541 1.00053 1.48000 0.86672 0.84475 0.79204 0.79144 1.19381 1.19974 1.19214 1.67405 1.09405 1.29323 1.08358 0.89862 0.91939 0.91948 0.74620 0.82847 0.83069 0.82626 0.73880 0.89313 0.89295 0.79234 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.70 59.85 0.64 1.40 16 2 N -0.71 -7.84 5.70 -67.92 -0.39 -8.22 16 3 C 0.57 7.13 7.81 -12.15 -0.09 7.03 16 4 O -0.54 -7.73 16.32 5.35 0.09 -7.64 16 5 C 0.08 0.90 6.75 -83.02 -0.56 0.34 16 6 C -0.09 -0.84 9.63 -38.95 -0.38 -1.22 16 7 C -0.09 -0.65 10.16 -39.34 -0.40 -1.05 16 8 C -0.09 -0.86 9.63 -38.95 -0.38 -1.24 16 9 C 0.09 1.08 6.75 -83.03 -0.56 0.52 16 10 C 0.57 8.43 7.81 -12.16 -0.09 8.33 16 11 O -0.54 -8.88 16.32 5.36 0.09 -8.79 16 12 N -0.68 -10.74 5.52 -62.31 -0.34 -11.08 16 13 C 0.10 1.70 6.15 -5.19 -0.03 1.66 16 14 C 0.44 9.24 7.85 -10.98 -0.09 9.15 16 15 O -0.58 -13.99 15.24 5.55 0.08 -13.91 16 16 N -0.57 -12.91 5.09 -10.96 -0.06 -12.97 16 17 C -0.31 -8.34 10.16 -14.93 -0.15 -8.50 16 18 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 19 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 20 N -0.87 -24.50 13.96 55.50 0.77 -23.72 16 21 Si 0.88 18.55 27.73 -169.99 -4.71 13.83 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 25 N -0.43 -5.34 8.71 -6.38 -0.06 -5.39 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.42 4.53 8.16 -40.82 -0.33 4.20 16 30 H 0.15 1.20 7.64 -52.49 -0.40 0.80 16 31 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.16 1.32 7.64 -52.49 -0.40 0.92 16 33 H 0.42 6.78 6.76 -40.82 -0.28 6.51 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16 37 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -33.11 334.67 -5.40 -38.52 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -3.74 Total: 16.79 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: -2.19 Total: 17.55 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.07 Total: -61.39 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: 0.26 Total: -30.34 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.71 Total: 13.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.11 -5.40 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323525175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.211 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds