Wall clock time and date at job start Fri Apr 10 2020 17:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21513 * 119.99898 * 0.28095 * 3 2 1 5 5 C 1.48232 * 120.00016 * 180.27596 * 3 2 1 6 6 C 1.39631 * 119.65369 * 179.73021 * 5 3 2 7 7 C 1.38538 * 119.24418 * 179.73487 * 6 5 3 8 8 C 1.38586 * 118.55561 * 0.52587 * 7 6 5 9 9 C 1.39588 * 119.24353 * 359.73747 * 8 7 6 10 10 C 1.48222 * 119.65287 * 179.97438 * 9 8 7 11 11 O 1.21510 * 119.99746 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00145 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99933 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.46815 * 180.02562 * 13 12 10 15 15 O 1.21293 * 120.00444 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99804 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99869 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00032 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99947 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00226 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99959 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47429 * 90.00215 * 21 19 17 23 23 H 1.48500 * 109.47322 * 210.00391 * 21 19 17 24 24 H 1.48508 * 109.47362 * 330.00201 * 21 19 17 25 25 N 1.32336 * 119.65143 * 0.02562 * 5 3 2 26 26 H 1.09001 * 109.47007 * 179.72339 * 1 2 3 27 27 H 1.09004 * 109.46963 * 299.72135 * 1 2 3 28 28 H 1.08994 * 109.47567 * 59.72287 * 1 2 3 29 29 H 0.97001 * 120.00384 * 180.28447 * 2 1 3 30 30 H 1.07999 * 120.37264 * 0.02562 * 6 5 3 31 31 H 1.08004 * 120.72107 * 180.24403 * 7 6 5 32 32 H 1.07994 * 120.38050 * 179.75239 * 8 7 6 33 33 H 0.97001 * 120.00221 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.47146 * 299.99888 * 13 12 10 35 35 H 1.09002 * 109.47380 * 60.00363 * 13 12 10 36 36 H 0.96997 * 119.99639 * 0.02562 * 16 14 13 37 37 H 0.96995 * 120.00382 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2195 0.0052 5 6 3.6211 1.1673 -0.0062 6 6 4.3119 2.3807 -0.0119 7 6 5.6972 2.3709 -0.0120 8 6 6.3510 1.1490 -0.0177 9 6 5.5989 -0.0269 -0.0174 10 6 6.2888 -1.3388 -0.0240 11 8 7.5029 -1.3866 -0.0292 12 7 5.5694 -2.4785 -0.0244 13 6 6.2513 -3.7751 -0.0303 14 6 5.2276 -4.8810 -0.0301 15 8 4.0448 -4.6126 -0.0249 16 7 5.6265 -6.1685 -0.0345 17 6 4.6952 -7.1746 -0.0338 18 1 3.6420 -6.9355 -0.0300 19 6 5.1063 -8.5019 -0.0378 20 7 4.2137 -9.4663 -0.0366 21 14 6.9279 -8.9153 -0.0451 22 1 7.4156 -9.0277 1.3530 23 1 7.1398 -10.2059 -0.7485 24 1 7.6766 -7.8410 -0.7456 25 7 4.2759 0.0172 -0.0122 26 1 -0.3633 -1.0277 -0.0050 27 1 -0.3633 0.5095 0.8925 28 1 -0.3634 0.5181 -0.8874 29 1 1.9500 -0.8400 -0.0042 30 1 3.7723 3.3163 -0.0113 31 1 6.2556 3.2954 -0.0124 32 1 7.4302 1.1069 -0.0220 33 1 4.6002 -2.4403 -0.0206 34 1 6.8719 -3.8551 -0.9228 35 1 6.8785 -3.8599 0.8571 36 1 6.5724 -6.3831 -0.0375 37 1 4.5007 -10.3928 -0.0398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323525175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:10 Heat of formation + Delta-G solvation = -91.043549 kcal Electronic energy + Delta-G solvation = -23812.122876 eV Core-core repulsion = 19974.682003 eV Total energy + Delta-G solvation = -3837.440873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03021 -40.95839 -40.24318 -39.48406 -36.32057 -35.81809 -35.44411 -33.85992 -33.73053 -32.87693 -29.61154 -28.24970 -26.67134 -25.43311 -24.87491 -22.12445 -21.59846 -21.46539 -20.62388 -19.65847 -18.96629 -17.54588 -17.39859 -17.12926 -16.95893 -16.87826 -16.57734 -16.52732 -16.20528 -15.73324 -15.65220 -15.17233 -14.84779 -14.70620 -14.38920 -14.19961 -13.99704 -13.85042 -13.57227 -13.18376 -13.13522 -12.95651 -12.43471 -12.03212 -11.99452 -11.56739 -11.31320 -11.13506 -10.78612 -10.63680 -10.54362 -10.32973 -10.24739 -10.13066 -8.44462 -6.06383 -0.65541 -0.23011 1.31723 1.32562 1.35227 1.44964 1.78419 1.81944 1.84528 2.03880 2.21668 2.70962 2.75825 2.87539 3.11980 3.49926 3.76999 3.78099 3.90727 4.00350 4.26912 4.35541 4.40442 4.40665 4.44932 4.58201 4.87836 4.91078 4.95529 5.14674 5.27169 5.36805 5.49074 5.89127 6.10313 6.32823 6.49521 6.55059 6.79551 6.94850 6.99765 7.30182 7.79251 8.71938 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.003228 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.018319 B = 8672.337401 C =10271.907373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.712 5.712 3 C 0.568 3.432 4 O -0.562 6.562 5 C 0.058 3.942 6 C -0.085 4.085 7 C -0.065 4.065 8 C -0.082 4.082 9 C 0.062 3.938 10 C 0.573 3.427 11 O -0.555 6.555 12 N -0.693 5.693 13 C 0.114 3.886 14 C 0.444 3.556 15 O -0.611 6.611 16 N -0.577 5.577 17 C -0.330 4.330 18 H 0.064 0.936 19 C -0.008 4.008 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.230 1.230 25 N -0.445 5.445 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.417 0.583 30 H 0.168 0.832 31 H 0.197 0.803 32 H 0.171 0.829 33 H 0.418 0.582 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.392 0.608 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 22.512 0.001 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.362 5.362 3 C 0.354 3.646 4 O -0.441 6.441 5 C -0.083 4.083 6 C -0.106 4.106 7 C -0.091 4.091 8 C -0.102 4.102 9 C -0.078 4.078 10 C 0.359 3.641 11 O -0.434 6.434 12 N -0.346 5.346 13 C -0.013 4.013 14 C 0.231 3.769 15 O -0.497 6.497 16 N -0.217 5.217 17 C -0.460 4.460 18 H 0.082 0.918 19 C -0.208 4.208 20 N -0.566 5.566 21 Si 0.779 3.221 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.154 1.154 25 N -0.160 5.160 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.253 0.747 30 H 0.186 0.814 31 H 0.214 0.786 32 H 0.188 0.812 33 H 0.257 0.743 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.228 0.772 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.811 22.300 0.003 22.813 hybrid contribution 0.514 -0.768 -0.006 0.924 sum 5.325 21.532 -0.003 22.181 Atomic orbital electron populations 1.21791 0.77788 1.04282 1.02378 1.45809 1.08960 1.08927 1.72457 1.18069 0.86143 0.84097 0.76326 1.90758 1.69335 1.31974 1.52009 1.21128 0.93834 0.90133 1.03236 1.22607 0.95712 0.99000 0.93260 1.22128 0.93146 0.99531 0.94263 1.22605 1.03390 0.91216 0.93013 1.20961 0.89237 0.94241 1.03401 1.18016 0.86245 0.83409 0.76469 1.90766 1.13363 1.87362 1.51900 1.45602 1.12219 1.04275 1.72460 1.21023 0.93496 0.80987 1.05801 1.20481 0.89857 0.84096 0.82451 1.90534 1.19715 1.83245 1.56209 1.41906 1.08568 1.04930 1.66293 1.19029 0.90295 0.85945 1.50683 0.91818 1.26065 1.04652 0.94364 0.95736 1.69778 1.36757 1.00760 1.49347 0.85448 0.76948 0.79703 0.80043 1.18125 1.20026 1.15373 1.67245 1.09708 1.30130 1.08895 0.88157 0.91870 0.91879 0.74697 0.81399 0.78571 0.81194 0.74298 0.87105 0.87003 0.77174 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 10.70 127.77 1.37 2.83 16 2 N -0.71 -15.98 5.70 -487.09 -2.78 -18.76 16 3 C 0.57 14.14 7.81 86.90 0.68 14.82 16 4 O -0.56 -16.14 16.32 -3.76 -0.06 -16.20 16 5 C 0.06 1.28 6.75 42.06 0.28 1.57 16 6 C -0.09 -1.34 9.63 22.68 0.22 -1.12 16 7 C -0.07 -0.72 10.16 22.42 0.23 -0.49 16 8 C -0.08 -1.32 9.63 22.68 0.22 -1.11 16 9 C 0.06 1.46 6.75 42.04 0.28 1.74 16 10 C 0.57 16.13 7.81 86.90 0.68 16.80 16 11 O -0.56 -17.07 16.32 -3.75 -0.06 -17.13 16 12 N -0.69 -21.10 5.52 -469.33 -2.59 -23.69 16 13 C 0.11 3.53 6.15 85.63 0.53 4.06 16 14 C 0.44 18.69 7.85 87.66 0.69 19.38 16 15 O -0.61 -30.62 15.24 -3.07 -0.05 -30.67 16 16 N -0.58 -25.67 5.09 -306.97 -1.56 -27.23 16 17 C -0.33 -18.38 10.16 84.04 0.85 -17.52 16 18 H 0.06 4.20 7.39 -2.91 -0.02 4.17 16 19 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 20 N -0.93 -53.80 13.96 21.66 0.30 -53.49 16 21 Si 0.96 37.20 27.73 68.60 1.90 39.11 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 23 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.23 -7.52 6.52 99.48 0.65 -6.88 16 25 N -0.44 -10.79 8.71 -174.08 -1.52 -12.30 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.42 9.39 8.16 -92.71 -0.76 8.64 16 30 H 0.17 2.16 7.64 -2.91 -0.02 2.14 16 31 H 0.20 0.41 8.06 -2.91 -0.02 0.39 16 32 H 0.17 2.28 7.64 -2.91 -0.02 2.25 16 33 H 0.42 13.54 6.76 -92.71 -0.63 12.91 16 34 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.39 14.49 5.76 -92.71 -0.53 13.96 16 37 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -76.07 334.67 -0.73 -76.80 By element: Atomic # 1 Polarization: 43.41 SS G_CDS: -0.81 Total: 42.59 kcal Atomic # 6 Polarization: 34.49 SS G_CDS: 6.49 Total: 40.98 kcal Atomic # 7 Polarization: -127.33 SS G_CDS: -8.14 Total: -135.47 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: -0.17 Total: -64.01 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 1.90 Total: 39.11 kcal Total: -76.07 -0.73 -76.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323525175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.248 kcal (2) G-P(sol) polarization free energy of solvation -76.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds