Wall clock time and date at job start Fri Apr 10 2020 17:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99726 * 2 1 4 4 H 1.48501 * 109.47471 * 270.00250 * 3 2 1 5 5 H 1.48504 * 109.47108 * 30.00315 * 3 2 1 6 6 H 1.48498 * 109.47155 * 149.99812 * 3 2 1 7 7 C 1.37871 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99530 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00571 * 359.72701 * 7 2 1 10 10 C 1.52991 * 109.47626 * 180.27423 * 9 7 2 11 11 C 1.52997 * 109.47403 * 179.97438 * 10 9 7 12 12 S 1.81406 * 109.47322 * 179.97438 * 11 10 9 13 13 O 1.42097 * 110.54084 * 291.62783 * 12 11 10 14 14 O 1.42094 * 110.53915 * 68.37820 * 12 11 10 15 15 N 1.65595 * 104.44825 * 180.02562 * 12 11 10 16 16 C 1.46499 * 120.00275 * 66.60865 * 15 12 11 17 17 C 1.50691 * 110.45974 * 58.38121 * 16 15 12 18 18 N 1.34781 * 119.99920 * 37.66076 * 17 16 15 19 19 O 1.21281 * 120.00359 * 217.67381 * 17 16 15 20 20 C 1.54510 * 110.51385 * 180.98790 * 16 15 12 21 21 C 1.54482 * 104.06551 * 118.64086 * 20 16 15 22 22 O 1.44432 * 104.80205 * 23.98229 * 21 20 16 23 23 C 1.44425 * 105.27050 * 319.48348 * 22 21 20 24 24 H 0.97001 * 120.00201 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46470 * 300.27382 * 9 7 2 26 26 H 1.09003 * 109.47099 * 60.26688 * 9 7 2 27 27 H 1.08998 * 109.47281 * 299.99796 * 10 9 7 28 28 H 1.09010 * 109.47297 * 59.99793 * 10 9 7 29 29 H 1.08998 * 109.47553 * 300.00064 * 11 10 9 30 30 H 1.09004 * 109.46942 * 60.00518 * 11 10 9 31 31 H 0.96999 * 119.99932 * 246.60718 * 15 12 11 32 32 H 0.96993 * 120.00240 * 355.00053 * 18 17 16 33 33 H 0.97003 * 119.99843 * 174.98804 * 18 17 16 34 34 H 1.09001 * 110.51166 * 237.28577 * 20 16 15 35 35 H 1.09000 * 110.51144 * 359.86160 * 20 16 15 36 36 H 1.09002 * 110.36837 * 142.80880 * 21 20 16 37 37 H 1.08992 * 110.37325 * 265.03924 * 21 20 16 38 38 H 1.08999 * 110.37571 * 281.68060 * 23 22 21 39 39 H 1.09005 * 110.36821 * 159.34404 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 0.0051 10 6 2.2454 -3.6620 0.0102 11 6 1.4805 -4.9870 0.0165 12 16 2.6594 -6.3658 0.0217 13 8 3.3553 -6.4315 -1.2154 14 8 3.3569 -6.4206 1.2585 15 7 1.7091 -7.7219 0.0277 16 6 0.8757 -8.0375 -1.1352 17 6 1.7270 -8.1784 -2.3706 18 7 2.9414 -8.7574 -2.2898 19 8 1.3195 -7.7705 -3.4376 20 6 0.0654 -9.3293 -0.8860 21 6 -1.4074 -8.8703 -0.9684 22 8 -1.3760 -7.6725 -1.7748 23 6 -0.2034 -6.9510 -1.3387 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5530 0.8954 26 1 0.6245 -2.5608 -0.8846 27 1 2.8721 -3.6081 -0.8801 28 1 2.8721 -3.6004 0.8999 29 1 0.8541 -5.0407 0.9069 30 1 0.8536 -5.0489 -0.8731 31 1 1.7042 -8.3073 0.8011 32 1 3.2981 -9.0176 -1.4262 33 1 3.4587 -8.9139 -3.0953 34 1 0.2787 -10.0688 -1.6578 35 1 0.2866 -9.7344 0.1015 36 1 -2.0169 -9.6355 -1.4492 37 1 -1.7923 -8.6496 0.0271 38 1 -0.4031 -6.4340 -0.4001 39 1 0.1120 -6.2416 -2.1039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349841028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:34 Heat of formation + Delta-G solvation = -152.420582 kcal Electronic energy + Delta-G solvation = -24520.430193 eV Core-core repulsion = 20783.479012 eV Total energy + Delta-G solvation = -3736.951181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94777 -38.38068 -37.07705 -36.00621 -35.43551 -34.78361 -33.38779 -32.25538 -31.02550 -28.95447 -27.80705 -24.51716 -23.55516 -22.89472 -20.86785 -20.26680 -19.49076 -18.18829 -17.66824 -17.42057 -16.71055 -16.57443 -15.92692 -15.80524 -15.59914 -15.33089 -14.88701 -14.49015 -14.40279 -14.07060 -13.73334 -13.03170 -12.67648 -12.46144 -12.34640 -12.13089 -12.10554 -11.96646 -11.94612 -11.74641 -11.42111 -11.33462 -10.93129 -10.92071 -10.84114 -10.41838 -10.09432 -9.98401 -9.73547 -9.64365 -9.39233 -9.13706 -8.40979 -6.05819 -4.09202 0.21371 2.26417 2.58234 3.17079 3.30843 3.36971 3.40479 3.56344 3.69928 3.90212 4.16768 4.25573 4.42023 4.52929 4.60707 4.67364 4.80095 5.02033 5.10227 5.15826 5.30094 5.30648 5.39926 5.44830 5.48358 5.78752 6.19262 6.33419 6.37693 6.56312 6.70276 6.82436 7.19437 7.55289 7.64787 7.91543 8.12249 8.31428 8.96719 9.55668 11.05348 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.019756 B = 0.003999 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.922331 B = 6999.269600 C = 7551.317990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.030 3.970 10 C -0.104 4.104 11 C -0.617 4.617 12 S 2.584 3.416 13 O -0.945 6.945 14 O -0.955 6.955 15 N -1.113 6.113 16 C 0.124 3.876 17 C 0.525 3.475 18 N -0.828 5.828 19 O -0.522 6.522 20 C -0.141 4.141 21 C 0.042 3.958 22 O -0.349 6.349 23 C 0.031 3.969 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.022 0.978 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.421 0.579 32 H 0.397 0.603 33 H 0.405 0.595 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 -23.137 1.098 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.143 4.143 11 C -0.749 4.749 12 S 2.681 3.319 13 O -0.935 6.935 14 O -0.945 6.945 15 N -0.872 5.872 16 C 0.031 3.969 17 C 0.306 3.694 18 N -0.391 5.391 19 O -0.397 6.397 20 C -0.181 4.181 21 C -0.036 4.036 22 O -0.267 6.267 23 C -0.048 4.048 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.256 0.744 32 H 0.225 0.775 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.446 -22.559 0.152 22.564 hybrid contribution 0.331 0.613 0.743 1.018 sum 0.777 -21.947 0.895 21.979 Atomic orbital electron populations 1.69958 1.06077 1.26822 1.50434 1.25011 0.94882 0.99358 0.95050 0.86556 0.79842 0.83184 0.78224 1.20535 1.21162 1.19770 1.21224 0.93221 0.90850 1.51265 0.92393 1.19069 0.93497 0.90358 0.97865 1.21511 0.99404 0.91379 1.02028 1.30872 1.16406 1.16000 1.11670 1.05897 0.75936 0.75405 0.74667 1.93640 1.69816 1.85214 1.44794 1.93607 1.70234 1.85709 1.44971 1.56067 1.62654 1.43960 1.24543 1.21850 0.91659 0.98992 0.84431 1.20057 0.82261 0.77404 0.89678 1.43479 1.18940 1.63676 1.12964 1.90801 1.72229 1.47276 1.29350 1.23184 0.95341 0.95240 1.04289 1.23486 0.95123 0.88366 0.96591 1.89276 1.43896 1.33876 1.59617 1.24345 0.83903 0.94027 1.02513 0.92858 0.96042 0.95959 0.91422 0.91549 0.84891 0.84968 0.74371 0.77451 0.76428 0.89077 0.88338 0.88244 0.91262 0.89505 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.76 4.97 -27.89 -0.14 0.63 16 10 C -0.10 -2.06 5.16 -26.74 -0.14 -2.19 16 11 C -0.62 -9.18 4.54 37.16 0.17 -9.01 16 12 S 2.58 34.11 5.42 -107.50 -0.58 33.53 16 13 O -0.95 -14.80 14.63 -57.54 -0.84 -15.64 16 14 O -0.95 -14.92 18.08 -57.54 -1.04 -15.96 16 15 N -1.11 -9.69 4.82 0.87 0.00 -9.68 16 16 C 0.12 1.25 1.07 -131.40 -0.14 1.11 16 17 C 0.53 6.74 5.11 -10.99 -0.06 6.69 16 18 N -0.83 -8.24 7.40 31.22 0.23 -8.01 16 19 O -0.52 -8.89 16.66 5.56 0.09 -8.80 16 20 C -0.14 -0.94 6.51 -25.16 -0.16 -1.11 16 21 C 0.04 0.32 7.63 37.94 0.29 0.61 16 22 O -0.35 -4.36 11.65 -35.23 -0.41 -4.77 16 23 C 0.03 0.37 4.54 37.94 0.17 0.54 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 29 H 0.13 1.68 8.11 -51.93 -0.42 1.26 16 30 H 0.13 1.87 5.10 -51.92 -0.26 1.60 16 31 H 0.42 2.29 8.23 -34.46 -0.28 2.01 16 32 H 0.40 3.05 8.17 -40.82 -0.33 2.71 16 33 H 0.40 3.65 8.93 -40.82 -0.36 3.29 16 34 H 0.09 0.58 7.73 -51.93 -0.40 0.18 16 35 H 0.10 0.35 7.53 -51.93 -0.39 -0.04 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.89 6.47 -51.93 -0.34 0.55 16 39 H 0.12 1.63 6.37 -51.93 -0.33 1.30 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -37.85 328.43 -7.50 -45.36 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.20 Total: 4.53 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.42 Total: -16.27 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.97 Total: -43.49 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -2.20 Total: -45.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 34.11 SS G_CDS: -0.58 Total: 33.53 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -37.85 -7.50 -45.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349841028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.065 kcal (2) G-P(sol) polarization free energy of solvation -37.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds