Wall clock time and date at job start Fri Apr 10 2020 17:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99726 * 2 1 4 4 H 1.48501 * 109.47471 * 270.00250 * 3 2 1 5 5 H 1.48504 * 109.47108 * 30.00315 * 3 2 1 6 6 H 1.48498 * 109.47155 * 149.99812 * 3 2 1 7 7 C 1.37871 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99530 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00571 * 359.72701 * 7 2 1 10 10 C 1.52991 * 109.47626 * 180.27423 * 9 7 2 11 11 C 1.52997 * 109.47403 * 179.97438 * 10 9 7 12 12 S 1.81406 * 109.47322 * 179.97438 * 11 10 9 13 13 O 1.42097 * 110.54084 * 291.62783 * 12 11 10 14 14 O 1.42094 * 110.53915 * 68.37820 * 12 11 10 15 15 N 1.65595 * 104.44825 * 180.02562 * 12 11 10 16 16 C 1.46499 * 120.00275 * 66.60865 * 15 12 11 17 17 C 1.50691 * 110.45974 * 58.38121 * 16 15 12 18 18 N 1.34781 * 119.99920 * 37.66076 * 17 16 15 19 19 O 1.21281 * 120.00359 * 217.67381 * 17 16 15 20 20 C 1.54510 * 110.51385 * 180.98790 * 16 15 12 21 21 C 1.54482 * 104.06551 * 118.64086 * 20 16 15 22 22 O 1.44432 * 104.80205 * 23.98229 * 21 20 16 23 23 C 1.44425 * 105.27050 * 319.48348 * 22 21 20 24 24 H 0.97001 * 120.00201 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46470 * 300.27382 * 9 7 2 26 26 H 1.09003 * 109.47099 * 60.26688 * 9 7 2 27 27 H 1.08998 * 109.47281 * 299.99796 * 10 9 7 28 28 H 1.09010 * 109.47297 * 59.99793 * 10 9 7 29 29 H 1.08998 * 109.47553 * 300.00064 * 11 10 9 30 30 H 1.09004 * 109.46942 * 60.00518 * 11 10 9 31 31 H 0.96999 * 119.99932 * 246.60718 * 15 12 11 32 32 H 0.96993 * 120.00240 * 355.00053 * 18 17 16 33 33 H 0.97003 * 119.99843 * 174.98804 * 18 17 16 34 34 H 1.09001 * 110.51166 * 237.28577 * 20 16 15 35 35 H 1.09000 * 110.51144 * 359.86160 * 20 16 15 36 36 H 1.09002 * 110.36837 * 142.80880 * 21 20 16 37 37 H 1.08992 * 110.37325 * 265.03924 * 21 20 16 38 38 H 1.08999 * 110.37571 * 281.68060 * 23 22 21 39 39 H 1.09005 * 110.36821 * 159.34404 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 0.0051 10 6 2.2454 -3.6620 0.0102 11 6 1.4805 -4.9870 0.0165 12 16 2.6594 -6.3658 0.0217 13 8 3.3553 -6.4315 -1.2154 14 8 3.3569 -6.4206 1.2585 15 7 1.7091 -7.7219 0.0277 16 6 0.8757 -8.0375 -1.1352 17 6 1.7270 -8.1784 -2.3706 18 7 2.9414 -8.7574 -2.2898 19 8 1.3195 -7.7705 -3.4376 20 6 0.0654 -9.3293 -0.8860 21 6 -1.4074 -8.8703 -0.9684 22 8 -1.3760 -7.6725 -1.7748 23 6 -0.2034 -6.9510 -1.3387 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5530 0.8954 26 1 0.6245 -2.5608 -0.8846 27 1 2.8721 -3.6081 -0.8801 28 1 2.8721 -3.6004 0.8999 29 1 0.8541 -5.0407 0.9069 30 1 0.8536 -5.0489 -0.8731 31 1 1.7042 -8.3073 0.8011 32 1 3.2981 -9.0176 -1.4262 33 1 3.4587 -8.9139 -3.0953 34 1 0.2787 -10.0688 -1.6578 35 1 0.2866 -9.7344 0.1015 36 1 -2.0169 -9.6355 -1.4492 37 1 -1.7923 -8.6496 0.0271 38 1 -0.4031 -6.4340 -0.4001 39 1 0.1120 -6.2416 -2.1039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349841028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:33 Heat of formation + Delta-G solvation = -186.586649 kcal Electronic energy + Delta-G solvation = -24521.911744 eV Core-core repulsion = 20783.479012 eV Total energy + Delta-G solvation = -3738.432733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.81398 -39.30349 -38.26812 -37.19453 -36.53682 -36.35345 -34.36811 -34.16483 -31.70807 -30.09207 -29.32053 -25.91470 -24.92946 -23.61921 -22.39747 -21.35098 -20.50439 -19.20372 -18.62870 -18.49568 -18.34535 -17.58108 -17.20358 -16.72378 -16.64526 -16.46630 -16.27502 -15.82383 -15.71969 -15.07768 -14.58359 -14.48713 -14.09380 -13.82922 -13.57798 -13.38874 -13.24854 -13.17293 -13.03548 -12.86870 -12.77653 -12.71774 -12.51868 -12.19319 -12.09023 -11.81575 -11.76213 -11.38114 -11.09074 -10.85814 -10.63234 -10.58261 -10.51519 -8.23143 -6.34440 -0.90843 1.30551 1.39705 1.40707 1.51800 1.60692 2.29839 2.39243 2.59665 2.79499 3.10468 3.11589 3.17704 3.45073 3.60662 3.76835 3.79750 3.99970 4.09695 4.17991 4.33384 4.48577 4.52145 4.61532 4.75555 4.83865 4.88818 4.93511 5.03890 5.43948 5.60982 5.66755 5.78313 5.86554 5.94917 6.18271 6.36029 6.81257 7.24650 7.35091 8.88404 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.019756 B = 0.003999 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.922331 B = 6999.269600 C = 7551.317990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.553 4.553 8 H 0.061 0.939 9 C 0.030 3.970 10 C -0.103 4.103 11 C -0.630 4.630 12 S 2.620 3.380 13 O -0.968 6.968 14 O -0.972 6.972 15 N -1.085 6.085 16 C 0.128 3.872 17 C 0.516 3.484 18 N -0.815 5.815 19 O -0.574 6.574 20 C -0.132 4.132 21 C 0.031 3.969 22 O -0.382 6.382 23 C 0.022 3.978 24 H 0.265 0.735 25 H 0.006 0.994 26 H -0.002 1.002 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.135 0.865 31 H 0.442 0.558 32 H 0.410 0.590 33 H 0.409 0.591 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 -24.874 2.550 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.591 4.591 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.142 4.142 11 C -0.760 4.760 12 S 2.714 3.286 13 O -0.958 6.958 14 O -0.962 6.962 15 N -0.850 5.850 16 C 0.035 3.965 17 C 0.298 3.702 18 N -0.377 5.377 19 O -0.452 6.452 20 C -0.171 4.171 21 C -0.045 4.045 22 O -0.300 6.300 23 C -0.057 4.057 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.017 0.983 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.174 0.826 30 H 0.153 0.847 31 H 0.282 0.718 32 H 0.241 0.759 33 H 0.240 0.760 34 H 0.115 0.885 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.138 -24.316 1.656 24.399 hybrid contribution 0.089 1.058 0.275 1.097 sum 1.227 -23.258 1.931 23.370 Atomic orbital electron populations 1.70077 1.07670 1.27902 1.51315 1.25936 0.95793 1.03255 0.94543 0.85479 0.78786 0.78518 0.78493 1.19937 1.20473 1.18686 1.21730 0.93746 0.92473 1.51124 0.92084 1.18964 0.94042 0.91921 0.95891 1.21276 0.98583 0.92193 1.02119 1.30943 1.17177 1.14739 1.13115 1.04663 0.75184 0.75220 0.73522 1.93616 1.70560 1.85613 1.46002 1.93584 1.70803 1.86084 1.45741 1.55500 1.61825 1.42488 1.25160 1.21768 0.90957 1.00431 0.83373 1.20557 0.82918 0.76834 0.89918 1.43444 1.18081 1.62219 1.14002 1.90779 1.73446 1.49602 1.31415 1.23286 0.93619 0.93276 1.06916 1.23842 0.96243 0.87140 0.97307 1.89240 1.43913 1.35737 1.61135 1.24352 0.84789 0.94454 1.02140 0.92640 0.97520 0.98342 0.91840 0.91016 0.82622 0.84671 0.71751 0.75905 0.75963 0.88456 0.84140 0.86734 0.89144 0.87938 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 2 C 0.00 0.17 5.46 84.65 0.46 0.64 16 3 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.56 4.97 29.84 0.15 1.71 16 10 C -0.10 -4.12 5.16 30.59 0.16 -3.96 16 11 C -0.63 -18.49 4.54 71.98 0.33 -18.17 16 12 S 2.62 64.83 5.42 -56.49 -0.31 64.53 16 13 O -0.97 -29.39 14.63 -127.65 -1.87 -31.25 16 14 O -0.97 -28.12 18.08 -127.65 -2.31 -30.42 16 15 N -1.08 -15.70 4.82 -151.15 -0.73 -16.43 16 16 C 0.13 2.34 1.07 3.87 0.00 2.34 16 17 C 0.52 12.83 5.11 87.65 0.45 13.28 16 18 N -0.82 -14.96 7.40 -173.53 -1.28 -16.24 16 19 O -0.57 -20.03 16.66 -3.03 -0.05 -20.08 16 20 C -0.13 -1.29 6.51 31.61 0.21 -1.09 16 21 C 0.03 0.39 7.63 72.49 0.55 0.95 16 22 O -0.38 -9.34 11.65 -148.98 -1.74 -11.07 16 23 C 0.02 0.51 4.54 72.49 0.33 0.84 16 24 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 26 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 29 H 0.16 3.75 8.11 -2.39 -0.02 3.73 16 30 H 0.14 3.92 5.10 -2.39 -0.01 3.90 16 31 H 0.44 2.83 8.23 -96.75 -0.80 2.03 16 32 H 0.41 5.23 8.17 -92.71 -0.76 4.47 16 33 H 0.41 6.95 8.93 -92.71 -0.83 6.13 16 34 H 0.10 0.91 7.73 -2.39 -0.02 0.89 16 35 H 0.14 0.20 7.53 -2.39 -0.02 0.19 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 38 H 0.10 1.99 6.47 -2.39 -0.02 1.97 16 39 H 0.09 2.54 6.37 -2.38 -0.02 2.53 16 Total: -1.00 -84.53 328.43 -4.37 -88.90 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -1.27 Total: 16.40 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 2.87 Total: -34.83 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -1.73 Total: -88.66 kcal Atomic # 8 Polarization: -86.87 SS G_CDS: -5.96 Total: -92.83 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 64.83 SS G_CDS: -0.31 Total: 64.53 kcal Total: -84.53 -4.37 -88.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349841028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.683 kcal (2) G-P(sol) polarization free energy of solvation -84.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds