Wall clock time and date at job start Fri Apr 10 2020 17:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.46505 * 120.00155 * 59.99832 * 12 2 1 14 14 C 1.34773 * 120.00007 * 240.00425 * 12 2 1 15 15 O 1.21282 * 120.00259 * 359.97438 * 14 12 2 16 16 C 1.50702 * 120.00126 * 180.02562 * 14 12 2 17 17 N 1.46496 * 109.47189 * 179.97438 * 16 14 12 18 18 C 1.35085 * 119.71820 * 89.99933 * 17 16 14 19 19 C 1.38275 * 119.01380 * 180.02562 * 18 17 16 20 20 C 1.43200 * 120.74004 * 179.97438 * 19 18 17 21 21 N 8.48152 * 101.77211 * 66.78055 * 2 1 3 22 22 C 1.42095 * 118.52728 * 359.97438 * 19 18 17 23 23 O 1.35043 * 120.32281 * 180.02562 * 22 19 18 24 24 N 1.32223 * 119.35282 * 359.97438 * 22 19 18 25 25 C 1.33301 * 120.93916 * 359.72202 * 24 22 19 26 26 O 1.21931 * 119.20150 * 180.29479 * 25 24 22 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 32 32 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 33 33 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 34 34 H 1.09002 * 109.46657 * 299.99705 * 16 14 12 35 35 H 1.08996 * 109.47578 * 59.99114 * 16 14 12 36 36 H 1.08010 * 120.49595 * 0.02562 * 18 17 16 37 37 H 0.96706 * 113.99350 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1254 1.8913 16 6 3.2959 -0.7462 3.3136 17 7 4.1101 0.1745 4.1108 18 6 3.5246 0.9340 5.0622 19 6 4.3068 1.7984 5.8058 20 6 3.7246 2.6210 6.8232 21 7 3.2605 3.2735 7.6306 22 6 5.7013 1.8525 5.5380 23 8 6.4992 2.6834 6.2427 24 7 6.2101 1.0806 4.5927 25 6 5.4349 0.2512 3.8940 26 8 5.9384 -0.4503 3.0332 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7083 1.1609 -3.4845 31 1 2.4157 -2.7377 0.9717 32 1 1.6237 -2.2852 2.5002 33 1 0.6904 -2.3002 0.9847 34 1 2.4483 -1.0891 3.9069 35 1 3.9016 -1.6023 3.0167 36 1 2.4613 0.8671 5.2395 37 1 7.4306 2.6466 5.9850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361935868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:42 Heat of formation + Delta-G solvation = -50.264295 kcal Electronic energy + Delta-G solvation = -24810.201769 eV Core-core repulsion = 20974.529217 eV Total energy + Delta-G solvation = -3835.672552 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.19307 -40.79737 -39.83443 -38.30018 -37.47302 -37.13808 -35.78196 -34.82316 -32.82112 -31.69554 -29.18943 -27.57908 -27.25745 -26.31377 -25.21876 -23.21843 -21.03667 -20.97950 -19.94598 -19.46078 -18.65696 -18.33891 -17.70979 -17.24698 -16.95040 -16.73163 -16.23981 -15.92149 -15.56061 -15.38998 -15.03907 -14.77845 -14.59763 -14.33559 -14.25865 -14.15241 -13.83910 -13.46308 -13.28845 -13.10319 -12.98810 -12.90163 -12.68993 -12.58600 -12.19789 -12.15905 -12.13506 -11.48663 -11.20461 -11.16839 -10.79459 -10.51104 -9.82908 -9.36924 -8.15621 -6.31409 -0.56393 0.00350 0.93049 1.40223 1.43230 1.49444 1.56180 1.64565 1.98052 2.07941 2.27023 2.44149 2.65058 2.68499 3.00713 3.12909 3.39112 3.54123 3.82582 4.01540 4.07330 4.18892 4.50572 4.73945 4.74840 4.84492 4.93483 4.96544 5.07249 5.14804 5.47676 5.61408 5.66621 6.04131 6.05357 6.17099 6.42609 6.48272 6.75182 6.76720 6.87127 7.24836 7.42650 8.87815 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.003528 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.886653 B = 7934.127158 C = 8318.089597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.262 3.738 3 H 0.007 0.993 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.958 3.042 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.591 5.591 13 C 0.072 3.928 14 C 0.480 3.520 15 O -0.598 6.598 16 C 0.080 3.920 17 N -0.494 5.494 18 C 0.303 3.697 19 C -0.202 4.202 20 C 0.306 3.694 21 N -0.446 5.446 22 C 0.498 3.502 23 O -0.435 6.435 24 N -0.630 5.630 25 C 0.655 3.345 26 O -0.563 6.563 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.199 0.801 35 H 0.141 0.859 36 H 0.249 0.751 37 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 -5.831 19.175 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.160 3.840 3 H 0.025 0.975 4 C -0.580 4.580 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.783 3.217 9 H -0.184 1.184 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.321 5.321 13 C -0.070 4.070 14 C 0.267 3.733 15 O -0.480 6.480 16 C -0.045 4.045 17 N -0.204 5.204 18 C 0.159 3.841 19 C -0.215 4.215 20 C -0.009 4.009 21 N -0.123 5.123 22 C 0.296 3.704 23 O -0.232 6.232 24 N -0.389 5.389 25 C 0.357 3.643 26 O -0.439 6.439 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.216 0.784 35 H 0.159 0.841 36 H 0.265 0.735 37 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 1.708 -4.561 19.542 20.140 hybrid contribution 0.646 -0.168 -1.862 1.978 sum 2.353 -4.729 17.680 18.452 Atomic orbital electron populations 1.21853 0.96431 1.00436 1.00239 1.18529 0.91984 0.92006 0.81451 0.97506 1.21583 1.31841 1.13106 0.91421 0.92381 1.25661 0.95112 0.95629 1.01862 1.69997 1.37239 1.23757 1.24416 0.85614 0.78195 0.79289 0.78567 1.18415 1.20927 1.20878 1.48188 1.48348 1.13700 1.21902 1.22021 1.01927 0.79592 1.03414 1.21292 0.78854 0.87068 0.86065 1.90707 1.59533 1.19683 1.78068 1.22386 0.98734 0.91912 0.91461 1.45868 1.10080 1.34970 1.29482 1.23454 1.01428 0.80171 0.79015 1.15126 0.90346 1.09622 1.06437 1.24298 0.92949 0.92137 0.91553 1.81375 1.08369 1.10602 1.11969 1.20185 0.87510 0.81016 0.81657 1.84991 1.26912 1.55461 1.55864 1.69627 1.35802 1.17317 1.16122 1.17522 0.79531 0.83287 0.83915 1.91007 1.72642 1.45784 1.34497 0.91856 0.92962 0.95211 0.92692 0.92955 0.86691 0.90618 0.78413 0.84100 0.73502 0.69915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.95 71.98 0.64 -5.09 16 2 C 0.26 12.74 2.64 44.25 0.12 12.86 16 3 H 0.01 0.41 6.90 -2.39 -0.02 0.40 16 4 C -0.54 -28.66 8.37 25.60 0.21 -28.44 16 5 H 0.06 3.01 7.65 -2.91 -0.02 2.99 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.92 -51.88 11.32 21.45 0.24 -51.64 16 8 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 N -0.59 -21.36 2.75 -826.77 -2.28 -23.64 16 13 C 0.07 1.72 9.48 127.77 1.21 2.93 16 14 C 0.48 16.39 7.74 87.66 0.68 17.07 16 15 O -0.60 -27.19 15.76 -3.04 -0.05 -27.24 16 16 C 0.08 1.49 4.36 85.63 0.37 1.87 16 17 N -0.49 -10.46 2.05 -660.40 -1.35 -11.81 16 18 C 0.30 3.90 10.13 84.20 0.85 4.75 16 19 C -0.20 -3.26 5.77 -21.07 -0.12 -3.38 16 20 C 0.31 5.56 14.99 88.32 1.32 6.89 16 21 N -0.45 -10.24 18.55 19.02 0.35 -9.88 16 22 C 0.50 9.62 7.92 85.59 0.68 10.30 16 23 O -0.44 -6.17 13.06 -83.16 -1.09 -7.25 16 24 N -0.63 -16.90 10.38 -438.15 -4.55 -21.45 16 25 C 0.66 20.08 8.32 179.61 1.49 21.57 16 26 O -0.56 -22.55 16.67 -5.09 -0.08 -22.64 16 27 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 28 H 0.05 2.02 6.66 -2.39 -0.02 2.01 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.11 1.27 6.44 -2.39 -0.02 1.25 16 33 H 0.08 1.88 6.43 -2.39 -0.02 1.86 16 34 H 0.20 0.78 7.28 -2.39 -0.02 0.76 16 35 H 0.14 2.71 7.31 -2.39 -0.02 2.69 16 36 H 0.25 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.44 2.78 8.98 -74.05 -0.67 2.12 16 Total: -1.00 -90.16 331.73 1.63 -88.53 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: 0.49 Total: -0.63 kcal Atomic # 6 Polarization: 34.80 SS G_CDS: 7.92 Total: 42.71 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -7.58 Total: -118.42 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -1.22 Total: -57.14 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -90.16 1.63 -88.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361935868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.268 kcal (2) G-P(sol) polarization free energy of solvation -90.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds