Wall clock time and date at job start Fri Apr 10 2020 17:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34394 * 119.55311 * 2 1 4 4 O 1.21558 * 119.17681 * 359.97438 * 3 2 1 5 5 N 1.34438 * 121.65099 * 180.02562 * 3 2 1 6 6 H 0.96996 * 119.67324 * 180.02562 * 5 3 2 7 7 C 1.36860 * 120.64852 * 359.97438 * 5 3 2 8 8 N 1.36380 * 120.47223 * 179.97438 * 7 5 3 9 9 C 1.47445 * 111.00081 * 312.76375 * 8 7 5 10 10 C 1.54314 * 107.23333 * 123.26282 * 9 8 7 11 11 C 1.55140 * 103.02422 * 22.28390 * 10 9 8 12 12 O 1.42893 * 110.99189 * 82.43789 * 11 10 9 13 13 C 1.50700 * 110.99312 * 206.22086 * 11 10 9 14 14 H 1.07998 * 119.99783 * 24.60120 * 13 11 10 15 15 C 1.37875 * 119.99996 * 204.59686 * 13 11 10 16 16 N 1.31510 * 120.00225 * 170.08164 * 15 13 11 17 17 Si 1.86804 * 120.00008 * 350.08995 * 15 13 11 18 18 H 1.48495 * 109.47223 * 89.19066 * 17 15 13 19 19 H 1.48502 * 109.46847 * 209.19424 * 17 15 13 20 20 H 1.48500 * 109.46777 * 329.19154 * 17 15 13 21 21 C 1.47850 * 111.00547 * 73.60879 * 8 7 5 22 22 C 1.39873 * 119.04996 * 359.97438 * 7 5 3 23 23 C 1.43196 * 120.75534 * 179.72661 * 22 7 5 24 24 N 4.79104 * 135.37143 * 180.15382 * 2 1 3 25 25 C 1.34773 * 119.55767 * 179.97438 * 2 1 3 26 26 O 1.21772 * 120.35615 * 0.04102 * 25 2 1 27 27 H 1.08994 * 109.47004 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47277 * 119.99902 * 1 2 3 29 29 H 1.09003 * 109.46679 * 239.99595 * 1 2 3 30 30 H 1.09004 * 109.88581 * 242.66491 * 9 8 7 31 31 H 1.08995 * 109.88644 * 3.69022 * 9 8 7 32 32 H 1.08997 * 110.71026 * 140.66746 * 10 9 8 33 33 H 1.09001 * 110.70484 * 263.72371 * 10 9 8 34 34 H 0.96697 * 114.00252 * 64.71003 * 12 11 10 35 35 H 0.96992 * 120.00526 * 180.02562 * 16 15 13 36 36 H 1.08997 * 110.36865 * 332.46421 * 21 8 7 37 37 H 1.09000 * 110.37064 * 94.80091 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1279 1.1691 0.0000 4 8 1.4969 2.2081 -0.0005 5 7 3.4713 1.2183 -0.0005 6 1 3.9204 2.0781 -0.0001 7 6 4.2116 0.0672 -0.0005 8 7 5.5744 0.1213 -0.0016 9 6 6.0645 1.0757 -1.0130 10 6 6.9433 2.1096 -0.2780 11 6 7.3634 1.3572 1.0121 12 8 8.4802 0.5008 0.7645 13 6 7.6655 2.3248 2.1273 14 1 7.2201 3.3087 2.1239 15 6 8.5103 1.9539 3.1518 16 7 8.9291 2.8520 4.0164 17 14 9.0602 0.1759 3.3117 18 1 10.3014 -0.0312 2.5232 19 1 9.3234 -0.1343 4.7399 20 1 7.9928 -0.7203 2.7990 21 6 6.0895 0.5322 1.3220 22 6 3.5506 -1.1654 0.0005 23 6 4.2890 -2.3923 -0.0053 24 7 4.8747 -3.3657 -0.0090 25 6 2.1298 -1.1723 0.0005 26 8 1.5194 -2.2260 0.0002 27 1 -0.3633 1.0276 0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 -0.3633 -0.5139 0.8900 30 1 6.6576 0.5505 -1.7617 31 1 5.2217 1.5748 -1.4910 32 1 7.8175 2.3670 -0.8760 33 1 6.3671 3.0027 -0.0362 34 1 9.2895 0.9705 0.5206 35 1 9.5238 2.5912 4.7369 36 1 5.3550 1.1485 1.8403 37 1 6.3407 -0.3438 1.9200 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363727677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:49 Heat of formation + Delta-G solvation = -49.550681 kcal Electronic energy + Delta-G solvation = -25837.117108 eV Core-core repulsion = 22001.475501 eV Total energy + Delta-G solvation = -3835.641607 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.79679 -41.36265 -40.29014 -38.60421 -37.41578 -36.52541 -35.97225 -34.45799 -33.08351 -31.53513 -30.30711 -28.57226 -26.87241 -25.44506 -24.89665 -22.66421 -21.77499 -21.63998 -20.61886 -19.46317 -18.94174 -18.28004 -17.92368 -17.48261 -17.20658 -16.81038 -16.25514 -16.19139 -15.87701 -15.73382 -15.49619 -14.87235 -14.57493 -14.29234 -14.18271 -13.99919 -13.92808 -13.70725 -13.61985 -13.43438 -13.32695 -12.95530 -12.51487 -12.38689 -12.32344 -12.12058 -12.01238 -11.62927 -11.31000 -11.00693 -10.71861 -10.36123 -10.23023 -9.85541 -8.38751 -6.50036 -0.84209 0.54541 0.68727 1.30240 1.45151 1.53265 1.69762 1.72204 2.05415 2.14270 2.38177 2.47118 2.69876 2.93951 3.37176 3.48072 3.60641 3.78485 4.01363 4.09861 4.17279 4.35334 4.35653 4.48542 4.55445 4.61268 4.80332 4.83039 4.83769 4.98209 5.11167 5.24871 5.31288 5.49919 5.61541 5.86339 6.02979 6.18559 6.52065 6.59978 6.62688 7.00463 7.29703 8.73310 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.005046 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.794195 B = 5547.235861 C = 6165.859140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.547 5.547 3 C 0.710 3.290 4 O -0.540 6.540 5 N -0.633 5.633 6 H 0.450 0.550 7 C 0.482 3.518 8 N -0.504 5.504 9 C 0.039 3.961 10 C -0.149 4.149 11 C 0.220 3.780 12 O -0.563 6.563 13 C -0.545 4.545 14 H 0.061 0.939 15 C 0.037 3.963 16 N -0.926 5.926 17 Si 0.984 3.016 18 H -0.281 1.281 19 H -0.340 1.340 20 H -0.266 1.266 21 C 0.055 3.945 22 C -0.218 4.218 23 C 0.316 3.684 24 N -0.458 5.458 25 C 0.584 3.416 26 O -0.529 6.529 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.385 0.615 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 0.377 -11.509 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.291 5.291 3 C 0.411 3.589 4 O -0.413 6.413 5 N -0.280 5.280 6 H 0.296 0.704 7 C 0.271 3.729 8 N -0.227 5.227 9 C -0.085 4.085 10 C -0.188 4.188 11 C 0.179 3.821 12 O -0.372 6.372 13 C -0.583 4.583 14 H 0.079 0.921 15 C -0.164 4.164 16 N -0.563 5.563 17 Si 0.818 3.182 18 H -0.207 1.207 19 H -0.273 1.273 20 H -0.192 1.192 21 C -0.068 4.068 22 C -0.233 4.233 23 C 0.001 3.999 24 N -0.136 5.136 25 C 0.378 3.622 26 O -0.406 6.406 27 H 0.131 0.869 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.235 0.765 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.200 -2.009 -11.363 16.793 hybrid contribution 0.857 1.089 0.786 1.593 sum -11.344 -0.920 -10.577 15.537 Atomic orbital electron populations 1.22251 0.72726 1.06329 1.05292 1.46089 1.11738 1.04862 1.66432 1.15601 0.81261 0.84333 0.77707 1.91080 1.64930 1.31241 1.54033 1.44031 1.06166 1.11306 1.66543 0.70449 1.19950 0.87837 0.85271 0.79796 1.60901 1.00856 1.51848 1.09135 1.23218 1.00104 0.91870 0.93261 1.23356 1.01268 0.97751 0.96412 1.20049 0.83346 0.86010 0.92729 1.86141 1.22504 1.39042 1.89485 1.21439 1.29134 1.00515 1.07181 0.92117 1.25678 0.95234 1.00612 0.94910 1.70049 1.33505 1.35795 1.16915 0.85141 0.79536 0.80982 0.72517 1.20730 1.27264 1.19223 1.23729 0.97115 0.99872 0.86050 1.15854 0.90593 0.86183 1.30691 1.24106 0.92049 0.91491 0.92274 1.81171 1.09053 1.11568 1.11773 1.16258 0.86392 0.83366 0.76149 1.90911 1.69974 1.30208 1.49465 0.86946 0.88722 0.89184 0.87478 0.88860 0.88544 0.89438 0.76538 0.92418 0.89820 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 9.99 127.77 1.28 2.36 16 2 N -0.55 -11.13 2.95 -806.46 -2.38 -13.51 16 3 C 0.71 14.29 8.35 179.28 1.50 15.78 16 4 O -0.54 -12.60 16.34 -3.90 -0.06 -12.66 16 5 N -0.63 -11.45 4.54 -321.40 -1.46 -12.91 16 6 H 0.45 6.61 7.78 -92.71 -0.72 5.89 16 7 C 0.48 10.89 5.19 132.73 0.69 11.58 16 8 N -0.50 -12.95 4.51 -689.43 -3.11 -16.06 16 9 C 0.04 0.77 6.36 86.64 0.55 1.32 16 10 C -0.15 -3.58 6.13 31.77 0.19 -3.38 16 11 C 0.22 7.58 0.70 -10.15 -0.01 7.57 16 12 O -0.56 -20.21 8.93 -148.98 -1.33 -21.54 16 13 C -0.54 -24.59 8.84 25.60 0.23 -24.37 16 14 H 0.06 2.99 8.00 -2.91 -0.02 2.97 16 15 C 0.04 1.88 5.45 84.65 0.46 2.35 16 16 N -0.93 -51.45 13.96 21.45 0.30 -51.15 16 17 Si 0.98 44.66 24.84 68.60 1.70 46.37 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.34 -16.45 7.11 99.48 0.71 -15.74 16 20 H -0.27 -11.99 5.26 99.48 0.52 -11.47 16 21 C 0.06 1.79 5.57 86.77 0.48 2.27 16 22 C -0.22 -5.79 5.82 -20.69 -0.12 -5.91 16 23 C 0.32 10.44 14.48 88.33 1.28 11.72 16 24 N -0.46 -17.21 18.54 19.00 0.35 -16.86 16 25 C 0.58 14.90 7.44 85.19 0.63 15.53 16 26 O -0.53 -16.39 16.58 -4.58 -0.08 -16.47 16 27 H 0.11 1.47 6.81 -2.39 -0.02 1.46 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 31 H 0.09 1.22 6.56 -2.39 -0.02 1.20 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 1.95 7.99 -2.39 -0.02 1.93 16 34 H 0.38 11.99 8.84 -74.06 -0.65 11.33 16 35 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.08 2.51 7.56 -2.39 -0.02 2.49 16 37 H 0.07 2.84 6.32 -2.39 -0.02 2.82 16 Total: -1.00 -67.38 315.73 0.70 -66.68 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -0.40 Total: 11.28 kcal Atomic # 6 Polarization: 29.66 SS G_CDS: 7.17 Total: 36.83 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -6.30 Total: -110.48 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -1.47 Total: -50.67 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.70 Total: 46.37 kcal Total: -67.38 0.70 -66.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363727677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.125 kcal (2) G-P(sol) polarization free energy of solvation -67.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds