Wall clock time and date at job start Fri Apr 10 2020 17:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99698 * 2 1 4 4 H 1.48499 * 109.47202 * 264.98058 * 3 2 1 5 5 H 1.48500 * 109.47787 * 24.98503 * 3 2 1 6 6 H 1.48503 * 109.46953 * 144.98690 * 3 2 1 7 7 C 1.37879 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99500 * 184.56415 * 7 2 1 9 9 C 1.50693 * 120.00057 * 4.57043 * 7 2 1 10 10 O 1.42898 * 110.64549 * 60.49035 * 9 7 2 11 11 C 1.55161 * 110.71783 * 183.63453 * 9 7 2 12 12 C 1.55396 * 101.36422 * 153.94439 * 11 9 7 13 13 N 1.47427 * 104.87266 * 323.01503 * 12 11 9 14 14 C 1.34776 * 125.64746 * 204.16436 * 13 12 11 15 15 O 1.21485 * 119.99981 * 179.97438 * 14 13 12 16 16 C 1.48310 * 119.99737 * 359.96448 * 14 13 12 17 17 N 1.32890 * 120.14390 * 283.69793 * 16 14 13 18 18 C 1.31838 * 119.99569 * 180.02562 * 17 16 14 19 19 C 1.39005 * 120.29456 * 0.02901 * 18 17 16 20 20 N 1.31836 * 120.28559 * 359.97414 * 19 18 17 21 21 C 1.32893 * 119.99910 * 359.71047 * 20 19 18 22 22 C 1.48313 * 120.14521 * 180.29597 * 21 20 19 23 23 N 1.34778 * 119.99961 * 5.63285 * 22 21 20 24 24 O 1.21493 * 119.99929 * 185.62643 * 22 21 20 25 25 C 1.47018 * 108.70294 * 24.13671 * 13 12 11 26 26 H 0.97001 * 119.99950 * 0.02562 * 1 2 3 27 27 H 0.96694 * 114.00332 * 295.19658 * 10 9 7 28 28 H 1.08994 * 111.00752 * 272.11421 * 11 9 7 29 29 H 1.08998 * 111.00424 * 35.96787 * 11 9 7 30 30 H 1.08998 * 110.34145 * 204.16896 * 12 11 9 31 31 H 1.08999 * 110.44277 * 81.92035 * 12 11 9 32 32 H 1.08003 * 119.85115 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.85795 * 179.97438 * 19 18 17 34 34 H 0.96999 * 119.99817 * 359.97438 * 23 22 21 35 35 H 0.96994 * 120.00279 * 180.02562 * 23 22 21 36 36 H 1.09003 * 109.87847 * 239.51919 * 25 13 12 37 37 H 1.09003 * 110.01636 * 118.43009 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6026 1.9852 -1.3947 5 1 1.3976 2.6810 0.5913 6 1 3.4896 1.4731 0.8033 7 6 2.0045 -1.1941 0.0005 8 1 3.0819 -1.1955 0.0750 9 6 1.2546 -2.4971 -0.1029 10 8 0.5147 -2.5570 -1.3239 11 6 2.2274 -3.7007 0.0092 12 6 1.2839 -4.8070 0.5575 13 7 0.3817 -4.1069 1.4900 14 6 -0.2777 -4.6739 2.5196 15 8 -0.9976 -3.9971 3.2264 16 6 -0.1246 -6.1242 2.7896 17 7 -0.7500 -7.0147 2.0268 18 6 -0.6122 -8.3031 2.2698 19 6 0.1852 -8.7369 3.3224 20 7 0.8108 -7.8633 4.0864 21 6 0.6851 -6.5620 3.8480 22 6 1.3927 -5.5767 4.7013 23 7 2.2536 -6.0003 5.6478 24 8 1.1964 -4.3877 4.5469 25 6 0.3211 -2.6877 1.1111 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1910 -1.8992 -1.3889 28 1 2.6270 -3.9724 -0.9678 29 1 3.0319 -3.4885 0.7134 30 1 1.8588 -5.5679 1.0853 31 1 0.7141 -5.2584 -0.2547 32 1 -1.1213 -9.0248 1.6481 33 1 0.2928 -9.7940 3.5154 34 1 2.4101 -6.9496 5.7712 35 1 2.7161 -5.3560 6.2061 36 1 0.6607 -2.0677 1.9409 37 1 -0.6995 -2.4172 0.8400 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469406312.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:32 Heat of formation + Delta-G solvation = -57.544728 kcal Electronic energy + Delta-G solvation = -25729.456203 eV Core-core repulsion = 21893.467948 eV Total energy + Delta-G solvation = -3835.988255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65191 -39.19418 -38.98903 -37.11158 -34.87758 -34.22270 -33.52976 -32.18501 -32.03002 -29.97199 -27.85032 -26.14483 -25.81614 -24.53019 -22.59655 -21.54807 -19.91456 -19.42432 -18.38991 -18.24995 -17.29761 -16.98561 -16.49899 -15.97368 -15.53080 -15.23068 -15.15801 -14.61758 -14.41084 -14.18064 -14.12514 -13.58018 -13.05211 -12.85258 -12.81983 -12.08083 -12.05239 -11.67847 -11.60755 -11.37233 -11.00116 -10.79620 -10.64573 -10.52437 -10.42901 -10.14050 -9.90187 -9.79955 -9.70081 -9.28281 -9.21264 -8.63653 -8.26555 -7.83487 -6.22253 -4.30276 0.02255 0.62102 2.55465 2.93299 3.01172 3.25292 3.30489 3.33618 3.36076 3.46966 3.70629 4.13507 4.20510 4.33747 4.55958 4.81242 4.91810 4.94823 5.05981 5.37761 5.69469 5.77465 5.83874 6.04833 6.17536 6.51939 6.60632 6.70233 6.76879 6.93265 7.01282 7.08525 7.32501 7.33904 7.42406 7.78665 8.06385 8.09131 8.19926 8.65374 8.73516 9.32875 9.41732 10.85695 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.004522 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.564473 B = 6189.975882 C = 6752.669364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.104 3.896 13 N -0.593 5.593 14 C 0.593 3.407 15 O -0.514 6.514 16 C 0.120 3.880 17 N -0.411 5.411 18 C 0.078 3.922 19 C 0.053 3.947 20 N -0.411 5.411 21 C 0.053 3.947 22 C 0.568 3.432 23 N -0.836 5.836 24 O -0.486 6.486 25 C 0.109 3.891 26 H 0.270 0.730 27 H 0.381 0.619 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.184 0.816 33 H 0.183 0.817 34 H 0.408 0.592 35 H 0.408 0.592 36 H 0.072 0.928 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 -18.926 6.477 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.019 4.019 13 N -0.326 5.326 14 C 0.376 3.624 15 O -0.389 6.389 16 C -0.023 4.023 17 N -0.127 5.127 18 C -0.084 4.084 19 C -0.111 4.111 20 N -0.128 5.128 21 C -0.088 4.088 22 C 0.348 3.652 23 N -0.401 5.401 24 O -0.357 6.357 25 C -0.011 4.011 26 H 0.080 0.920 27 H 0.230 0.770 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.200 0.800 33 H 0.200 0.800 34 H 0.237 0.763 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.653 -18.086 6.576 19.426 hybrid contribution 0.222 0.752 0.493 0.927 sum 2.876 -17.334 7.070 18.940 Atomic orbital electron populations 1.69740 1.05976 1.27899 1.49463 1.25058 0.95033 0.99723 0.93351 0.86420 0.79751 0.82414 0.78324 1.20344 1.21073 1.19785 1.21458 0.93886 0.90148 1.52031 0.91562 1.19497 0.86902 0.92069 0.80647 1.86119 1.51761 1.60890 1.40368 1.22821 0.97179 0.94668 1.00639 1.22374 0.91882 0.95430 0.92223 1.48517 1.44424 1.12290 1.27348 1.16822 0.81152 0.83707 0.80734 1.90787 1.39197 1.61531 1.47348 1.22460 0.91641 0.96871 0.91315 1.68703 1.17251 1.02138 1.24563 1.24242 0.95163 0.93088 0.95954 1.24010 0.93878 1.00911 0.92253 1.68336 1.18052 1.00931 1.25527 1.22085 0.98325 0.91829 0.96566 1.17654 0.79838 0.87155 0.80563 1.43503 1.46060 1.12706 1.37829 1.91054 1.61900 1.15137 1.67559 1.23091 1.01759 0.76555 0.99745 0.92024 0.76965 0.90394 0.90450 0.93403 0.91289 0.79951 0.80050 0.76253 0.75992 0.90920 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.37 11.00 55.43 0.61 -23.76 16 2 C 0.07 1.92 5.29 -17.82 -0.09 1.83 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -14.42 8.11 -34.44 -0.28 -14.70 16 8 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 9 C 0.25 6.21 0.84 -89.94 -0.08 6.13 16 10 O -0.58 -14.83 13.07 -35.23 -0.46 -15.29 16 11 C -0.12 -2.40 6.26 -24.32 -0.15 -2.55 16 12 C 0.10 2.01 6.69 -2.26 -0.02 1.99 16 13 N -0.59 -13.38 3.33 -171.15 -0.57 -13.95 16 14 C 0.59 13.32 5.39 -12.12 -0.07 13.26 16 15 O -0.51 -13.40 16.44 -14.91 -0.25 -13.65 16 16 C 0.12 2.12 5.44 -82.50 -0.45 1.67 16 17 N -0.41 -6.15 10.44 -9.31 -0.10 -6.25 16 18 C 0.08 0.73 11.23 -17.26 -0.19 0.54 16 19 C 0.05 0.42 11.23 -17.27 -0.19 0.23 16 20 N -0.41 -4.58 9.73 -9.31 -0.09 -4.67 16 21 C 0.05 0.81 6.78 -82.50 -0.56 0.25 16 22 C 0.57 9.04 8.06 -12.11 -0.10 8.94 16 23 N -0.84 -8.70 8.86 30.64 0.27 -8.43 16 24 O -0.49 -10.21 14.56 -14.91 -0.22 -10.43 16 25 C 0.11 2.80 5.20 -3.07 -0.02 2.78 16 26 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.38 9.84 7.53 45.56 0.34 10.19 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.57 8.04 -51.93 -0.42 1.16 16 30 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.41 3.16 8.20 -40.82 -0.33 2.82 16 35 H 0.41 3.58 8.93 -40.82 -0.36 3.22 16 36 H 0.07 2.06 7.82 -51.93 -0.41 1.66 16 37 H 0.07 1.88 7.84 -51.93 -0.41 1.47 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -35.36 323.35 -6.36 -41.72 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -3.22 Total: 13.50 kcal Atomic # 6 Polarization: 22.57 SS G_CDS: -2.19 Total: 20.38 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.12 Total: -57.06 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -0.92 Total: -39.36 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.36 -6.36 -41.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469406312.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.825 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds