Wall clock time and date at job start Fri Apr 10 2020 17:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99698 * 2 1 4 4 H 1.48499 * 109.47202 * 264.98058 * 3 2 1 5 5 H 1.48500 * 109.47787 * 24.98503 * 3 2 1 6 6 H 1.48503 * 109.46953 * 144.98690 * 3 2 1 7 7 C 1.37879 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99500 * 184.56415 * 7 2 1 9 9 C 1.50693 * 120.00057 * 4.57043 * 7 2 1 10 10 O 1.42898 * 110.64549 * 60.49035 * 9 7 2 11 11 C 1.55161 * 110.71783 * 183.63453 * 9 7 2 12 12 C 1.55396 * 101.36422 * 153.94439 * 11 9 7 13 13 N 1.47427 * 104.87266 * 323.01503 * 12 11 9 14 14 C 1.34776 * 125.64746 * 204.16436 * 13 12 11 15 15 O 1.21485 * 119.99981 * 179.97438 * 14 13 12 16 16 C 1.48310 * 119.99737 * 359.96448 * 14 13 12 17 17 N 1.32890 * 120.14390 * 283.69793 * 16 14 13 18 18 C 1.31838 * 119.99569 * 180.02562 * 17 16 14 19 19 C 1.39005 * 120.29456 * 0.02901 * 18 17 16 20 20 N 1.31836 * 120.28559 * 359.97414 * 19 18 17 21 21 C 1.32893 * 119.99910 * 359.71047 * 20 19 18 22 22 C 1.48313 * 120.14521 * 180.29597 * 21 20 19 23 23 N 1.34778 * 119.99961 * 5.63285 * 22 21 20 24 24 O 1.21493 * 119.99929 * 185.62643 * 22 21 20 25 25 C 1.47018 * 108.70294 * 24.13671 * 13 12 11 26 26 H 0.97001 * 119.99950 * 0.02562 * 1 2 3 27 27 H 0.96694 * 114.00332 * 295.19658 * 10 9 7 28 28 H 1.08994 * 111.00752 * 272.11421 * 11 9 7 29 29 H 1.08998 * 111.00424 * 35.96787 * 11 9 7 30 30 H 1.08998 * 110.34145 * 204.16896 * 12 11 9 31 31 H 1.08999 * 110.44277 * 81.92035 * 12 11 9 32 32 H 1.08003 * 119.85115 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.85795 * 179.97438 * 19 18 17 34 34 H 0.96999 * 119.99817 * 359.97438 * 23 22 21 35 35 H 0.96994 * 120.00279 * 180.02562 * 23 22 21 36 36 H 1.09003 * 109.87847 * 239.51919 * 25 13 12 37 37 H 1.09003 * 110.01636 * 118.43009 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6026 1.9852 -1.3947 5 1 1.3976 2.6810 0.5913 6 1 3.4896 1.4731 0.8033 7 6 2.0045 -1.1941 0.0005 8 1 3.0819 -1.1955 0.0750 9 6 1.2546 -2.4971 -0.1029 10 8 0.5147 -2.5570 -1.3239 11 6 2.2274 -3.7007 0.0092 12 6 1.2839 -4.8070 0.5575 13 7 0.3817 -4.1069 1.4900 14 6 -0.2777 -4.6739 2.5196 15 8 -0.9976 -3.9971 3.2264 16 6 -0.1246 -6.1242 2.7896 17 7 -0.7500 -7.0147 2.0268 18 6 -0.6122 -8.3031 2.2698 19 6 0.1852 -8.7369 3.3224 20 7 0.8108 -7.8633 4.0864 21 6 0.6851 -6.5620 3.8480 22 6 1.3927 -5.5767 4.7013 23 7 2.2536 -6.0003 5.6478 24 8 1.1964 -4.3877 4.5469 25 6 0.3211 -2.6877 1.1111 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1910 -1.8992 -1.3889 28 1 2.6270 -3.9724 -0.9678 29 1 3.0319 -3.4885 0.7134 30 1 1.8588 -5.5679 1.0853 31 1 0.7141 -5.2584 -0.2547 32 1 -1.1213 -9.0248 1.6481 33 1 0.2928 -9.7940 3.5154 34 1 2.4101 -6.9496 5.7712 35 1 2.7161 -5.3560 6.2061 36 1 0.6607 -2.0677 1.9409 37 1 -0.6995 -2.4172 0.8400 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469406312.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:32 Heat of formation + Delta-G solvation = -90.351782 kcal Electronic energy + Delta-G solvation = -25730.878824 eV Core-core repulsion = 21893.467948 eV Total energy + Delta-G solvation = -3837.410876 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.69836 -40.78170 -40.27549 -38.94393 -36.17050 -35.85981 -34.58771 -34.26309 -33.10161 -31.71022 -29.71677 -27.72678 -26.78661 -26.11347 -24.24078 -22.59895 -21.61204 -21.14685 -19.42622 -19.25019 -19.16900 -18.65880 -17.53951 -17.50615 -17.01422 -16.55479 -16.41740 -16.32899 -16.07216 -15.53364 -15.26225 -14.87023 -14.81117 -14.72747 -14.49799 -13.81814 -13.55932 -13.36506 -13.00287 -12.85742 -12.61630 -12.57750 -12.42344 -12.30027 -12.16447 -11.79005 -11.43653 -11.22551 -10.89671 -10.69129 -10.65016 -10.41583 -10.25773 -9.68110 -8.27430 -6.43506 -0.97070 -0.27666 1.37508 1.40712 1.41628 1.51483 1.51702 1.74807 2.03081 2.37128 2.47774 2.84459 2.93407 2.98533 3.21473 3.52861 3.67993 3.88068 3.97006 4.04263 4.10207 4.28619 4.33436 4.44665 4.61537 4.98614 5.01829 5.08231 5.15046 5.28928 5.44692 5.67776 5.70955 5.81790 6.02889 6.15742 6.41655 6.47419 6.62888 6.96420 7.11400 7.23395 7.31405 8.79065 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.004522 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.564473 B = 6189.975882 C = 6752.669364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.560 4.560 8 H 0.067 0.933 9 C 0.238 3.762 10 O -0.582 6.582 11 C -0.108 4.108 12 C 0.113 3.887 13 N -0.601 5.601 14 C 0.589 3.411 15 O -0.570 6.570 16 C 0.086 3.914 17 N -0.442 5.442 18 C 0.096 3.904 19 C 0.088 3.912 20 N -0.406 5.406 21 C 0.043 3.957 22 C 0.559 3.441 23 N -0.804 5.804 24 O -0.553 6.553 25 C 0.129 3.871 26 H 0.270 0.730 27 H 0.375 0.625 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.237 0.763 33 H 0.247 0.753 34 H 0.424 0.576 35 H 0.417 0.583 36 H 0.029 0.971 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -23.231 6.420 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.598 4.598 8 H 0.086 0.914 9 C 0.198 3.802 10 O -0.390 6.390 11 C -0.146 4.146 12 C -0.008 4.008 13 N -0.333 5.333 14 C 0.375 3.625 15 O -0.449 6.449 16 C -0.054 4.054 17 N -0.158 5.158 18 C -0.069 4.069 19 C -0.078 4.078 20 N -0.123 5.123 21 C -0.095 4.095 22 C 0.340 3.660 23 N -0.370 5.370 24 O -0.430 6.430 25 C 0.006 3.994 26 H 0.079 0.921 27 H 0.223 0.777 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.253 0.747 33 H 0.263 0.737 34 H 0.257 0.743 35 H 0.250 0.750 36 H 0.047 0.953 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.130 -22.430 6.552 23.729 hybrid contribution -0.264 1.796 0.554 1.898 sum 3.866 -20.633 7.106 22.162 Atomic orbital electron populations 1.69861 1.07197 1.28510 1.49844 1.25846 0.95819 1.02959 0.92932 0.85451 0.78466 0.78358 0.78665 1.19262 1.21117 1.19358 1.21797 0.94170 0.91424 1.52377 0.91450 1.19643 0.87280 0.93483 0.79825 1.86101 1.51603 1.60605 1.40654 1.22805 0.96608 0.93226 1.01947 1.22429 0.91243 0.95146 0.92030 1.48570 1.45295 1.11109 1.28350 1.17630 0.79476 0.86154 0.79242 1.90715 1.41291 1.63958 1.48894 1.21544 0.95444 0.94218 0.94199 1.68598 1.17806 1.04253 1.25189 1.25252 0.94000 0.91417 0.96225 1.25158 0.90114 1.02938 0.89546 1.68486 1.18731 0.99062 1.26044 1.21756 0.98543 0.93330 0.95900 1.18021 0.80155 0.86603 0.81210 1.43294 1.43880 1.13922 1.35880 1.91031 1.64351 1.17867 1.69727 1.22557 0.99712 0.78532 0.98616 0.92082 0.77670 0.88335 0.90211 0.90383 0.90409 0.74723 0.73666 0.74282 0.74986 0.95251 0.94711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.45 11.00 21.45 0.24 -52.22 16 2 C 0.03 1.41 5.29 84.65 0.45 1.85 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.56 -31.02 8.11 25.60 0.21 -30.81 16 8 H 0.07 3.62 7.78 -2.91 -0.02 3.60 16 9 C 0.24 12.31 0.84 -10.35 -0.01 12.30 16 10 O -0.58 -30.53 13.07 -148.98 -1.95 -32.48 16 11 C -0.11 -4.50 6.26 32.16 0.20 -4.30 16 12 C 0.11 4.35 6.69 87.03 0.58 4.93 16 13 N -0.60 -28.53 3.33 -813.70 -2.71 -31.23 16 14 C 0.59 27.98 5.39 86.92 0.47 28.45 16 15 O -0.57 -32.31 16.44 15.73 0.26 -32.05 16 16 C 0.09 3.02 5.44 42.16 0.23 3.25 16 17 N -0.44 -12.26 10.44 -183.37 -1.91 -14.18 16 18 C 0.10 1.26 11.23 84.88 0.95 2.21 16 19 C 0.09 0.83 11.23 84.88 0.95 1.78 16 20 N -0.41 -7.34 9.73 -183.37 -1.78 -9.13 16 21 C 0.04 1.25 6.78 42.16 0.29 1.54 16 22 C 0.56 18.02 8.06 86.92 0.70 18.72 16 23 N -0.80 -15.86 8.86 -175.28 -1.55 -17.41 16 24 O -0.55 -24.83 14.56 15.70 0.23 -24.60 16 25 C 0.13 7.09 5.20 86.73 0.45 7.54 16 26 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.37 20.37 7.53 -74.06 -0.56 19.81 16 28 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 29 H 0.08 3.25 8.04 -2.39 -0.02 3.23 16 30 H 0.08 2.52 7.69 -2.39 -0.02 2.50 16 31 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.24 0.51 8.06 -2.91 -0.02 0.48 16 33 H 0.25 -0.77 8.06 -2.91 -0.02 -0.80 16 34 H 0.42 5.47 8.20 -92.71 -0.76 4.71 16 35 H 0.42 7.03 8.93 -92.71 -0.83 6.20 16 36 H 0.03 1.82 7.82 -2.39 -0.02 1.80 16 37 H 0.03 2.09 7.84 -2.39 -0.02 2.07 16 Total: -1.00 -87.52 323.35 -2.66 -90.18 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.98 Total: 29.62 kcal Atomic # 6 Polarization: 42.00 SS G_CDS: 5.47 Total: 47.47 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -7.72 Total: -124.16 kcal Atomic # 8 Polarization: -87.66 SS G_CDS: -1.46 Total: -89.12 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -87.52 -2.66 -90.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469406312.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.172 kcal (2) G-P(sol) polarization free energy of solvation -87.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds