Wall clock time and date at job start Fri Apr 10 2020 17:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00311 * 2 1 4 4 H 1.48497 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47435 * 299.99756 * 3 2 1 6 6 H 1.48503 * 109.47036 * 59.99834 * 3 2 1 7 7 C 1.37877 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99787 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.64145 * 300.69592 * 9 7 2 11 11 C 1.55163 * 110.72079 * 177.55778 * 9 7 2 12 12 C 1.54905 * 101.58454 * 205.95545 * 11 9 7 13 13 N 1.47427 * 104.83253 * 37.00853 * 12 11 9 14 14 C 1.34774 * 125.65300 * 155.91452 * 13 12 11 15 15 O 1.21490 * 120.00315 * 179.97438 * 14 13 12 16 16 C 1.48310 * 119.99463 * 359.97438 * 14 13 12 17 17 N 1.32892 * 120.14307 * 75.96009 * 16 14 13 18 18 C 1.31841 * 119.99659 * 179.73998 * 17 16 14 19 19 C 1.39006 * 120.28959 * 0.51182 * 18 17 16 20 20 N 1.31842 * 120.28840 * 359.76344 * 19 18 17 21 21 C 1.32887 * 119.99748 * 359.97438 * 20 19 18 22 22 C 1.48314 * 120.14530 * 179.97438 * 21 20 19 23 23 N 1.34773 * 119.99410 * 5.39200 * 22 21 20 24 24 O 1.21487 * 120.00040 * 185.39057 * 22 21 20 25 25 C 1.47027 * 108.70081 * 335.87444 * 13 12 11 26 26 H 0.97004 * 119.99299 * 359.97438 * 1 2 3 27 27 H 0.96703 * 113.99879 * 56.86082 * 10 9 7 28 28 H 1.09000 * 111.00195 * 324.03273 * 11 9 7 29 29 H 1.08999 * 111.00274 * 87.84062 * 11 9 7 30 30 H 1.08997 * 110.36795 * 155.84932 * 12 11 9 31 31 H 1.09000 * 110.36509 * 278.06218 * 12 11 9 32 32 H 1.08001 * 119.85669 * 180.23148 * 18 17 16 33 33 H 1.08002 * 119.85548 * 179.74513 * 19 18 17 34 34 H 0.96997 * 120.00600 * 0.02562 * 23 22 21 35 35 H 0.97007 * 120.00006 * 180.02562 * 23 22 21 36 36 H 1.09001 * 109.88206 * 241.64026 * 25 13 12 37 37 H 1.08999 * 109.88565 * 120.48069 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.4074 -2.5937 1.1502 11 6 2.2320 -3.6996 -0.0607 12 6 1.3486 -4.7902 -0.7161 13 7 0.5282 -4.0674 -1.7050 14 6 -0.0373 -4.6082 -2.8024 15 8 -0.6965 -3.9144 -3.5507 16 6 0.1454 -6.0503 -3.0963 17 7 -0.5344 -6.9627 -2.4097 18 6 -0.3737 -8.2436 -2.6769 19 6 0.5131 -8.6471 -3.6683 20 7 1.1974 -7.7519 -4.3529 21 6 1.0404 -6.4575 -4.0966 22 6 1.8090 -5.4476 -4.8642 23 7 2.5859 -5.8335 -5.8957 24 8 1.7381 -4.2728 -4.5633 25 6 0.4281 -2.6589 -1.2952 26 1 -0.4849 0.8401 0.0004 27 1 -0.2248 -1.8669 1.2350 28 1 3.0946 -3.4678 -0.6855 29 1 2.5459 -3.9990 0.9393 30 1 1.9710 -5.5354 -1.2116 31 1 0.7136 -5.2644 0.0322 32 1 -0.9301 -8.9830 -2.1200 33 1 0.6424 -9.6986 -3.8786 34 1 2.6422 -6.7715 -6.1362 35 1 3.0889 -5.1731 -6.3976 36 1 -0.6140 -2.4009 -1.1067 37 1 0.8360 -2.0160 -2.0751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469406313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:35 Heat of formation + Delta-G solvation = -58.403240 kcal Electronic energy + Delta-G solvation = -25726.809870 eV Core-core repulsion = 21890.784387 eV Total energy + Delta-G solvation = -3836.025483 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.65673 -39.20058 -38.99368 -37.11268 -34.88639 -34.23510 -33.53952 -32.13977 -32.03676 -29.97496 -27.87988 -26.14682 -25.81923 -24.53527 -22.57705 -21.55606 -19.90544 -19.41079 -18.39567 -18.25728 -17.30992 -17.00797 -16.52578 -15.93101 -15.56334 -15.23616 -15.15365 -14.65335 -14.39568 -14.15074 -14.11854 -13.58857 -13.03177 -12.90182 -12.76444 -12.08249 -12.05160 -11.66688 -11.60036 -11.39391 -11.03218 -10.77604 -10.61266 -10.53698 -10.43816 -10.12843 -9.93446 -9.80523 -9.69548 -9.29143 -9.21453 -8.62959 -8.26677 -7.83307 -6.23921 -4.32172 0.01888 0.61659 2.55800 2.91553 3.00693 3.23846 3.30386 3.33370 3.37040 3.46543 3.70265 4.13088 4.20649 4.32834 4.55643 4.80782 4.91678 4.94452 5.05073 5.40470 5.72128 5.77843 5.86619 6.07035 6.18433 6.53757 6.59859 6.69866 6.78623 6.93858 7.02129 7.07909 7.32045 7.35762 7.42198 7.78517 8.03834 8.08240 8.20023 8.64207 8.72403 9.35658 9.45394 10.84046 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.004532 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.870352 B = 6176.791125 C = 6771.867050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.585 6.585 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.589 5.589 14 C 0.595 3.405 15 O -0.521 6.521 16 C 0.120 3.880 17 N -0.410 5.410 18 C 0.079 3.921 19 C 0.053 3.947 20 N -0.411 5.411 21 C 0.054 3.946 22 C 0.569 3.431 23 N -0.835 5.835 24 O -0.487 6.487 25 C 0.108 3.892 26 H 0.270 0.730 27 H 0.385 0.615 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.184 0.816 33 H 0.183 0.817 34 H 0.408 0.592 35 H 0.408 0.592 36 H 0.067 0.933 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -18.601 -7.358 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.395 6.395 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.321 5.321 14 C 0.378 3.622 15 O -0.397 6.397 16 C -0.023 4.023 17 N -0.126 5.126 18 C -0.084 4.084 19 C -0.110 4.110 20 N -0.128 5.128 21 C -0.088 4.088 22 C 0.349 3.651 23 N -0.401 5.401 24 O -0.358 6.358 25 C -0.013 4.013 26 H 0.080 0.920 27 H 0.236 0.764 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.201 0.799 33 H 0.200 0.800 34 H 0.238 0.762 35 H 0.240 0.760 36 H 0.085 0.915 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.999 -17.822 -7.386 19.524 hybrid contribution 0.240 0.813 -0.544 1.007 sum 3.238 -17.010 -7.930 19.045 Atomic orbital electron populations 1.69654 1.05991 1.27839 1.49893 1.25075 0.95056 0.99781 0.93366 0.86338 0.80057 0.82732 0.77722 1.19597 1.20732 1.20768 1.21537 0.93747 0.90018 1.52103 0.91420 1.19475 0.86099 0.92063 0.81450 1.86082 1.53595 1.52775 1.47025 1.22747 0.97583 0.94914 1.00148 1.22284 0.93236 0.95255 0.91028 1.48459 1.49318 1.12694 1.21633 1.16805 0.80458 0.83747 0.81162 1.90782 1.40999 1.60256 1.47631 1.22450 0.91466 0.96749 0.91634 1.68708 1.19501 1.01550 1.22876 1.24245 0.95516 0.93402 0.95265 1.24014 0.93233 1.00707 0.93083 1.68337 1.20434 1.00453 1.23620 1.22081 0.97660 0.91991 0.97064 1.17632 0.79604 0.87004 0.80818 1.43493 1.48979 1.13538 1.34057 1.91033 1.62044 1.16366 1.66372 1.23079 1.01827 0.77181 0.99193 0.91995 0.76383 0.90457 0.90431 0.93372 0.91298 0.79936 0.80037 0.76239 0.75985 0.91455 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 10.97 55.43 0.61 -23.79 16 2 C 0.07 1.88 5.26 -17.82 -0.09 1.78 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.41 8.12 -34.44 -0.28 -14.69 16 8 H 0.07 1.79 7.77 -52.49 -0.41 1.38 16 9 C 0.25 6.27 0.86 -89.94 -0.08 6.20 16 10 O -0.59 -15.09 13.09 -35.23 -0.46 -15.55 16 11 C -0.12 -2.45 6.22 -24.58 -0.15 -2.60 16 12 C 0.11 2.06 6.67 -2.53 -0.02 2.04 16 13 N -0.59 -13.40 3.33 -171.46 -0.57 -13.97 16 14 C 0.59 13.41 5.23 -12.12 -0.06 13.34 16 15 O -0.52 -13.54 16.73 -13.04 -0.22 -13.76 16 16 C 0.12 2.12 5.44 -82.50 -0.45 1.67 16 17 N -0.41 -6.16 10.44 -9.31 -0.10 -6.26 16 18 C 0.08 0.73 11.23 -17.26 -0.19 0.54 16 19 C 0.05 0.42 11.23 -17.26 -0.19 0.23 16 20 N -0.41 -4.57 9.73 -9.31 -0.09 -4.66 16 21 C 0.05 0.81 6.78 -82.50 -0.56 0.25 16 22 C 0.57 9.05 8.06 -12.12 -0.10 8.95 16 23 N -0.84 -8.69 8.86 30.64 0.27 -8.41 16 24 O -0.49 -10.17 14.74 -13.04 -0.19 -10.37 16 25 C 0.11 2.79 5.39 -3.06 -0.02 2.77 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.38 10.18 7.17 45.56 0.33 10.51 16 28 H 0.08 1.59 8.04 -51.93 -0.42 1.18 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.05 0.83 7.69 -51.93 -0.40 0.43 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.41 3.16 8.20 -40.82 -0.33 2.82 16 35 H 0.41 3.57 8.93 -40.82 -0.36 3.20 16 36 H 0.07 1.87 8.01 -51.93 -0.42 1.45 16 37 H 0.07 2.03 7.82 -51.93 -0.41 1.62 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -35.29 323.58 -6.33 -41.62 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -3.25 Total: 13.85 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: -2.19 Total: 20.49 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.12 Total: -57.10 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.87 Total: -39.68 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.29 -6.33 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469406313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.779 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds