Wall clock time and date at job start Fri Apr 10 2020 17:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00311 * 2 1 4 4 H 1.48497 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47435 * 299.99756 * 3 2 1 6 6 H 1.48503 * 109.47036 * 59.99834 * 3 2 1 7 7 C 1.37877 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99787 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.64145 * 300.69592 * 9 7 2 11 11 C 1.55163 * 110.72079 * 177.55778 * 9 7 2 12 12 C 1.54905 * 101.58454 * 205.95545 * 11 9 7 13 13 N 1.47427 * 104.83253 * 37.00853 * 12 11 9 14 14 C 1.34774 * 125.65300 * 155.91452 * 13 12 11 15 15 O 1.21490 * 120.00315 * 179.97438 * 14 13 12 16 16 C 1.48310 * 119.99463 * 359.97438 * 14 13 12 17 17 N 1.32892 * 120.14307 * 75.96009 * 16 14 13 18 18 C 1.31841 * 119.99659 * 179.73998 * 17 16 14 19 19 C 1.39006 * 120.28959 * 0.51182 * 18 17 16 20 20 N 1.31842 * 120.28840 * 359.76344 * 19 18 17 21 21 C 1.32887 * 119.99748 * 359.97438 * 20 19 18 22 22 C 1.48314 * 120.14530 * 179.97438 * 21 20 19 23 23 N 1.34773 * 119.99410 * 5.39200 * 22 21 20 24 24 O 1.21487 * 120.00040 * 185.39057 * 22 21 20 25 25 C 1.47027 * 108.70081 * 335.87444 * 13 12 11 26 26 H 0.97004 * 119.99299 * 359.97438 * 1 2 3 27 27 H 0.96703 * 113.99879 * 56.86082 * 10 9 7 28 28 H 1.09000 * 111.00195 * 324.03273 * 11 9 7 29 29 H 1.08999 * 111.00274 * 87.84062 * 11 9 7 30 30 H 1.08997 * 110.36795 * 155.84932 * 12 11 9 31 31 H 1.09000 * 110.36509 * 278.06218 * 12 11 9 32 32 H 1.08001 * 119.85669 * 180.23148 * 18 17 16 33 33 H 1.08002 * 119.85548 * 179.74513 * 19 18 17 34 34 H 0.96997 * 120.00600 * 0.02562 * 23 22 21 35 35 H 0.97007 * 120.00006 * 180.02562 * 23 22 21 36 36 H 1.09001 * 109.88206 * 241.64026 * 25 13 12 37 37 H 1.08999 * 109.88565 * 120.48069 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.4074 -2.5937 1.1502 11 6 2.2320 -3.6996 -0.0607 12 6 1.3486 -4.7902 -0.7161 13 7 0.5282 -4.0674 -1.7050 14 6 -0.0373 -4.6082 -2.8024 15 8 -0.6965 -3.9144 -3.5507 16 6 0.1454 -6.0503 -3.0963 17 7 -0.5344 -6.9627 -2.4097 18 6 -0.3737 -8.2436 -2.6769 19 6 0.5131 -8.6471 -3.6683 20 7 1.1974 -7.7519 -4.3529 21 6 1.0404 -6.4575 -4.0966 22 6 1.8090 -5.4476 -4.8642 23 7 2.5859 -5.8335 -5.8957 24 8 1.7381 -4.2728 -4.5633 25 6 0.4281 -2.6589 -1.2952 26 1 -0.4849 0.8401 0.0004 27 1 -0.2248 -1.8669 1.2350 28 1 3.0946 -3.4678 -0.6855 29 1 2.5459 -3.9990 0.9393 30 1 1.9710 -5.5354 -1.2116 31 1 0.7136 -5.2644 0.0322 32 1 -0.9301 -8.9830 -2.1200 33 1 0.6424 -9.6986 -3.8786 34 1 2.6422 -6.7715 -6.1362 35 1 3.0889 -5.1731 -6.3976 36 1 -0.6140 -2.4009 -1.1067 37 1 0.8360 -2.0160 -2.0751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469406313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:34 Heat of formation + Delta-G solvation = -91.161146 kcal Electronic energy + Delta-G solvation = -25728.230359 eV Core-core repulsion = 21890.784387 eV Total energy + Delta-G solvation = -3837.445972 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.70435 -40.79149 -40.27996 -38.95559 -36.20186 -35.86678 -34.59310 -34.22435 -33.11071 -31.72520 -29.76068 -27.73118 -26.78986 -26.12271 -24.23331 -22.60538 -21.60743 -21.15143 -19.42870 -19.26263 -19.21153 -18.67222 -17.57792 -17.48432 -17.00839 -16.58705 -16.43127 -16.33162 -16.02065 -15.54204 -15.27178 -14.86598 -14.82781 -14.71464 -14.51944 -13.82591 -13.55317 -13.39364 -13.00685 -12.90509 -12.63164 -12.58626 -12.38843 -12.27599 -12.17032 -11.79734 -11.47555 -11.23543 -10.89886 -10.68773 -10.64899 -10.43199 -10.27048 -9.68786 -8.29207 -6.45497 -0.97420 -0.28199 1.37193 1.38771 1.41548 1.50300 1.53032 1.74812 2.02674 2.36258 2.47475 2.84507 2.92178 2.97258 3.20908 3.52407 3.68752 3.87604 3.98476 4.03879 4.10735 4.27923 4.32916 4.44693 4.61173 4.96148 5.02348 5.07826 5.14498 5.29754 5.43765 5.67233 5.71183 5.81326 5.99207 6.15145 6.41179 6.46946 6.61748 6.94462 7.10409 7.25212 7.32944 8.77751 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.004532 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.870352 B = 6176.791125 C = 6771.867050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.238 3.762 10 O -0.585 6.585 11 C -0.109 4.109 12 C 0.115 3.885 13 N -0.598 5.598 14 C 0.591 3.409 15 O -0.576 6.576 16 C 0.085 3.915 17 N -0.442 5.442 18 C 0.096 3.904 19 C 0.088 3.912 20 N -0.406 5.406 21 C 0.044 3.956 22 C 0.560 3.440 23 N -0.804 5.804 24 O -0.554 6.554 25 C 0.126 3.874 26 H 0.271 0.729 27 H 0.378 0.622 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.237 0.763 33 H 0.248 0.752 34 H 0.424 0.576 35 H 0.417 0.583 36 H 0.033 0.967 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 -22.842 -7.472 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.086 0.914 9 C 0.198 3.802 10 O -0.394 6.394 11 C -0.147 4.147 12 C -0.007 4.007 13 N -0.329 5.329 14 C 0.377 3.623 15 O -0.455 6.455 16 C -0.055 4.055 17 N -0.159 5.159 18 C -0.069 4.069 19 C -0.077 4.077 20 N -0.123 5.123 21 C -0.095 4.095 22 C 0.341 3.659 23 N -0.370 5.370 24 O -0.430 6.430 25 C 0.004 3.996 26 H 0.081 0.919 27 H 0.228 0.772 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.253 0.747 33 H 0.264 0.736 34 H 0.257 0.743 35 H 0.250 0.750 36 H 0.051 0.949 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.366 -22.100 -7.536 23.754 hybrid contribution -0.223 1.839 -0.571 1.938 sum 4.143 -20.261 -8.107 22.212 Atomic orbital electron populations 1.69762 1.07192 1.28564 1.50144 1.25859 0.95855 1.02987 0.92903 0.85370 0.79110 0.78706 0.77651 1.18806 1.21092 1.19779 1.21848 0.93991 0.91249 1.52553 0.91366 1.19630 0.86490 0.93534 0.80566 1.86064 1.53559 1.52421 1.47320 1.22728 0.96876 0.93526 1.01549 1.22330 0.92937 0.94918 0.90551 1.48513 1.50094 1.11533 1.22760 1.17616 0.78714 0.86177 0.79758 1.90709 1.43037 1.62698 1.49066 1.21533 0.95069 0.94168 0.94685 1.68601 1.19968 1.03572 1.23717 1.25255 0.94840 0.91791 0.95005 1.25164 0.89795 1.02665 0.90095 1.68490 1.21084 0.98672 1.24061 1.21757 0.97608 0.93489 0.96637 1.17999 0.79853 0.86480 0.81545 1.43286 1.46896 1.14747 1.32052 1.91008 1.64491 1.19016 1.68494 1.22562 0.99420 0.79101 0.98562 0.91917 0.77168 0.90250 0.88399 0.90460 0.90466 0.74716 0.73643 0.74288 0.74966 0.94885 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.36 10.97 21.45 0.24 -52.12 16 2 C 0.02 1.36 5.26 84.65 0.45 1.80 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.56 -31.03 8.12 25.60 0.21 -30.82 16 8 H 0.07 3.69 7.77 -2.91 -0.02 3.66 16 9 C 0.24 12.44 0.86 -10.35 -0.01 12.43 16 10 O -0.59 -31.17 13.09 -148.98 -1.95 -33.12 16 11 C -0.11 -4.61 6.22 31.99 0.20 -4.41 16 12 C 0.11 4.47 6.67 86.85 0.58 5.05 16 13 N -0.60 -28.61 3.33 -814.68 -2.71 -31.32 16 14 C 0.59 28.14 5.23 86.92 0.46 28.59 16 15 O -0.58 -32.46 16.73 13.92 0.23 -32.23 16 16 C 0.09 3.00 5.44 42.16 0.23 3.23 16 17 N -0.44 -12.31 10.44 -183.37 -1.91 -14.22 16 18 C 0.10 1.27 11.23 84.88 0.95 2.22 16 19 C 0.09 0.83 11.23 84.88 0.95 1.79 16 20 N -0.41 -7.33 9.73 -183.37 -1.78 -9.11 16 21 C 0.04 1.26 6.78 42.16 0.29 1.55 16 22 C 0.56 18.01 8.06 86.93 0.70 18.71 16 23 N -0.80 -15.85 8.86 -175.29 -1.55 -17.41 16 24 O -0.55 -24.61 14.74 13.94 0.21 -24.40 16 25 C 0.13 7.02 5.39 86.73 0.47 7.49 16 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.38 21.00 7.17 -74.06 -0.53 20.47 16 28 H 0.08 3.29 8.04 -2.39 -0.02 3.27 16 29 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.08 2.57 7.69 -2.39 -0.02 2.55 16 31 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.24 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.25 -0.78 8.06 -2.91 -0.02 -0.81 16 34 H 0.42 5.49 8.20 -92.71 -0.76 4.73 16 35 H 0.42 7.00 8.93 -92.70 -0.83 6.17 16 36 H 0.03 2.00 8.01 -2.39 -0.02 1.98 16 37 H 0.03 1.88 7.82 -2.39 -0.02 1.87 16 Total: -1.00 -87.15 323.58 -2.70 -89.84 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.95 Total: 30.45 kcal Atomic # 6 Polarization: 42.16 SS G_CDS: 5.47 Total: 47.62 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -7.73 Total: -124.18 kcal Atomic # 8 Polarization: -88.24 SS G_CDS: -1.51 Total: -89.75 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -87.15 -2.70 -89.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469406313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.316 kcal (2) G-P(sol) polarization free energy of solvation -87.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds