Wall clock time and date at job start Fri Apr 10 2020 17:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00465 * 2 1 4 4 H 1.48500 * 109.47206 * 239.99474 * 3 2 1 5 5 H 1.48500 * 109.47080 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47121 * 119.99566 * 3 2 1 7 7 C 1.38818 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99814 * 197.44996 * 7 2 1 9 9 N 1.36933 * 120.00272 * 17.45699 * 7 2 1 10 10 C 1.46970 * 120.59490 * 28.23129 * 9 7 2 11 11 C 1.53366 * 108.63533 * 124.74961 * 10 9 7 12 12 N 1.46970 * 108.63399 * 49.43054 * 11 10 9 13 13 C 1.34770 * 120.59703 * 124.74846 * 12 11 10 14 14 O 1.21489 * 120.00031 * 7.02706 * 13 12 11 15 15 C 1.48324 * 120.00061 * 187.02414 * 13 12 11 16 16 C 1.39683 * 120.00112 * 200.46750 * 15 13 12 17 17 N 1.31787 * 120.00246 * 179.70904 * 16 15 13 18 18 C 1.32970 * 119.99919 * 0.56852 * 17 16 15 19 19 C 1.48222 * 120.00561 * 179.68346 * 18 17 16 20 20 O 1.21401 * 120.00202 * 180.02562 * 19 18 17 21 21 O 1.34663 * 119.99616 * 0.02654 * 19 18 17 22 22 C 1.39658 * 119.99540 * 359.70912 * 18 17 16 23 23 N 1.31834 * 119.99745 * 359.97438 * 22 18 17 24 24 C 1.46970 * 118.80727 * 304.76972 * 12 11 10 25 25 C 1.46958 * 120.59737 * 208.21466 * 9 7 2 26 26 H 0.97002 * 119.99147 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.60614 * 5.01335 * 10 9 7 28 28 H 1.08994 * 109.75188 * 244.58248 * 10 9 7 29 29 H 1.08996 * 109.61008 * 169.16880 * 11 10 9 30 30 H 1.08993 * 109.61397 * 289.68767 * 11 10 9 31 31 H 1.08006 * 119.99379 * 359.97438 * 16 15 13 32 32 H 0.96702 * 116.99877 * 179.97438 * 21 19 18 33 33 H 1.08000 * 120.00078 * 180.02562 * 22 18 17 34 34 H 1.09000 * 109.61463 * 295.48068 * 24 12 11 35 35 H 1.09001 * 109.74456 * 175.05231 * 24 12 11 36 36 H 1.09002 * 109.60915 * 354.98917 * 25 9 7 37 37 H 1.08995 * 109.61398 * 115.49922 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1042 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0529 -1.2237 0.2810 9 7 1.3728 -2.3610 -0.3547 10 6 0.2370 -2.3343 -1.2871 11 6 0.5400 -3.2802 -2.4557 12 7 0.9796 -4.5728 -1.9118 13 6 0.3522 -5.7132 -2.2614 14 8 -0.4999 -5.6969 -3.1271 15 6 0.7021 -6.9882 -1.5891 16 6 0.3995 -8.2066 -2.2015 17 7 0.7155 -9.3395 -1.6069 18 6 1.3123 -9.3228 -0.4187 19 6 1.6614 -10.5969 0.2533 20 8 2.2058 -10.5816 1.3383 21 8 1.3748 -11.7715 -0.3397 22 6 1.6095 -8.1046 0.1962 23 7 1.2990 -6.9714 -0.4016 24 6 2.1153 -4.5995 -0.9793 25 6 1.8122 -3.6535 0.1893 26 1 -0.4849 0.8401 -0.0004 27 1 0.0966 -1.3211 -1.6636 28 1 -0.6674 -2.6631 -0.7754 29 1 -0.3598 -3.4222 -3.0542 30 1 1.3307 -2.8558 -3.0743 31 1 -0.0896 -8.2202 -3.1644 32 1 1.6219 -12.5757 0.1370 33 1 2.0946 -8.0910 1.1611 34 1 3.0182 -4.2690 -1.4929 35 1 2.2587 -5.6122 -0.6025 36 1 2.7121 -3.5116 0.7878 37 1 1.0216 -4.0779 0.8080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:11 Heat of formation + Delta-G solvation = -15.987995 kcal Electronic energy + Delta-G solvation = -24793.766523 eV Core-core repulsion = 20959.580303 eV Total energy + Delta-G solvation = -3834.186220 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.93893 -40.38860 -39.32862 -36.97277 -36.61591 -35.15235 -33.84230 -32.36693 -31.23156 -30.30261 -27.61475 -26.42863 -25.15294 -23.85352 -23.01815 -22.58096 -21.11340 -19.37931 -19.08901 -18.02269 -17.82272 -17.31845 -16.52545 -16.42901 -15.85346 -15.36115 -15.18548 -14.88929 -14.78760 -14.45586 -13.79121 -13.69869 -13.55518 -13.36923 -13.16968 -12.55929 -12.42488 -12.06536 -11.85165 -11.45057 -11.35591 -11.19232 -10.78822 -10.74494 -10.53879 -10.32375 -10.26853 -9.98381 -9.96545 -9.93859 -9.17074 -8.62532 -8.36606 -6.74144 -5.87508 -3.31643 -0.46688 0.53125 1.73666 2.24116 2.66115 2.98805 3.33139 3.34493 3.40353 3.40959 3.54962 3.69216 3.89700 4.40697 4.44886 4.56110 4.77089 5.08092 5.28739 5.36759 5.64169 5.79057 5.81477 5.88063 6.00045 6.15271 6.22170 6.35199 6.47263 6.55553 6.70044 6.85070 7.02384 7.16088 7.38100 7.47558 7.65719 7.71069 8.17743 8.33870 9.09522 9.72470 10.29087 11.20143 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.027577 B = 0.003288 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.086249 B = 8514.016443 C = 9280.358281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.159 3.841 11 C 0.084 3.916 12 N -0.565 5.565 13 C 0.558 3.442 14 O -0.537 6.537 15 C 0.081 3.919 16 C 0.101 3.899 17 N -0.387 5.387 18 C 0.047 3.953 19 C 0.550 3.450 20 O -0.496 6.496 21 O -0.491 6.491 22 C 0.113 3.887 23 N -0.395 5.395 24 C 0.059 3.941 25 C 0.138 3.862 26 H 0.256 0.744 27 H 0.102 0.898 28 H 0.024 0.976 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.193 0.807 32 H 0.417 0.583 33 H 0.194 0.806 34 H 0.059 0.941 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -19.266 -2.220 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.032 3.968 11 C -0.039 4.039 12 N -0.294 5.294 13 C 0.342 3.658 14 O -0.415 6.415 15 C -0.061 4.061 16 C -0.062 4.062 17 N -0.104 5.104 18 C -0.093 4.093 19 C 0.391 3.609 20 O -0.383 6.383 21 O -0.301 6.301 22 C -0.047 4.047 23 N -0.112 5.112 24 C -0.066 4.066 25 C 0.011 3.989 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.210 0.790 32 H 0.276 0.724 33 H 0.210 0.790 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.858 -18.710 -2.546 19.098 hybrid contribution 0.616 0.402 0.438 0.856 sum 3.474 -18.308 -2.108 18.754 Atomic orbital electron populations 1.70007 1.05324 1.25909 1.53250 1.25081 0.95296 0.98581 1.00538 0.86334 0.78914 0.83115 0.78185 1.20943 1.21582 1.20810 1.19159 0.92815 0.84714 1.42042 0.91466 1.44048 1.36402 1.01727 1.49270 1.21201 0.89253 0.98554 0.87806 1.22731 1.00091 0.82101 0.98938 1.48018 1.31510 1.06162 1.43720 1.17625 0.82854 0.82418 0.82872 1.90783 1.33716 1.85234 1.31763 1.22939 0.94242 0.96856 0.92107 1.23915 0.95167 0.86046 1.01040 1.68581 1.05507 1.29770 1.06538 1.21232 1.01410 0.92693 0.94002 1.20159 0.74862 0.83610 0.82298 1.90947 1.39163 1.87767 1.20394 1.84665 1.76616 1.16277 1.52518 1.24105 0.94018 0.86286 1.00267 1.68895 1.07386 1.27309 1.07656 1.23339 0.86973 1.04140 0.92100 1.21188 0.98474 0.86670 0.92552 0.93358 0.87983 0.95745 0.89860 0.91540 0.78973 0.72419 0.78959 0.92254 0.86256 0.91595 0.95514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.39 11.20 55.49 0.62 -24.77 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 3 Si 0.91 21.00 29.59 -169.99 -5.03 15.97 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.24 2.97 -172.04 -0.51 -14.75 16 10 C 0.16 3.67 5.51 -3.60 -0.02 3.65 16 11 C 0.08 1.63 6.58 -3.60 -0.02 1.60 16 12 N -0.56 -10.03 2.95 -173.42 -0.51 -10.54 16 13 C 0.56 9.30 7.61 -12.11 -0.09 9.20 16 14 O -0.54 -9.91 15.96 5.38 0.09 -9.83 16 15 C 0.08 1.10 6.43 -82.71 -0.53 0.56 16 16 C 0.10 1.17 10.76 -17.03 -0.18 0.99 16 17 N -0.39 -4.41 10.27 -9.31 -0.10 -4.50 16 18 C 0.05 0.50 6.76 -82.74 -0.56 -0.06 16 19 C 0.55 5.19 8.33 34.83 0.29 5.48 16 20 O -0.50 -5.43 17.13 -19.19 -0.33 -5.76 16 21 O -0.49 -3.52 13.26 -40.39 -0.54 -4.06 16 22 C 0.11 1.18 10.77 -17.02 -0.18 1.00 16 23 N -0.40 -5.05 6.64 -9.28 -0.06 -5.11 16 24 C 0.06 0.97 6.26 -3.59 -0.02 0.95 16 25 C 0.14 2.74 6.67 -3.60 -0.02 2.72 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.10 2.61 5.99 -51.93 -0.31 2.30 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.56 7.03 -51.93 -0.37 1.20 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.19 1.91 7.78 -52.48 -0.41 1.50 16 32 H 0.42 0.82 9.11 45.56 0.42 1.24 16 33 H 0.19 1.58 7.64 -52.49 -0.40 1.18 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.12 1.74 3.92 -76.33 -0.30 1.44 16 36 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -32.39 319.63 -6.15 -38.54 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -3.02 Total: 0.79 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: -1.58 Total: 19.21 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.56 Total: -59.68 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.78 Total: -19.65 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.39 -6.15 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.555 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds