Wall clock time and date at job start Fri Apr 10 2020 17:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00465 * 2 1 4 4 H 1.48500 * 109.47206 * 239.99474 * 3 2 1 5 5 H 1.48500 * 109.47080 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47121 * 119.99566 * 3 2 1 7 7 C 1.38818 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99814 * 197.44996 * 7 2 1 9 9 N 1.36933 * 120.00272 * 17.45699 * 7 2 1 10 10 C 1.46970 * 120.59490 * 28.23129 * 9 7 2 11 11 C 1.53366 * 108.63533 * 124.74961 * 10 9 7 12 12 N 1.46970 * 108.63399 * 49.43054 * 11 10 9 13 13 C 1.34770 * 120.59703 * 124.74846 * 12 11 10 14 14 O 1.21489 * 120.00031 * 7.02706 * 13 12 11 15 15 C 1.48324 * 120.00061 * 187.02414 * 13 12 11 16 16 C 1.39683 * 120.00112 * 200.46750 * 15 13 12 17 17 N 1.31787 * 120.00246 * 179.70904 * 16 15 13 18 18 C 1.32970 * 119.99919 * 0.56852 * 17 16 15 19 19 C 1.48222 * 120.00561 * 179.68346 * 18 17 16 20 20 O 1.21401 * 120.00202 * 180.02562 * 19 18 17 21 21 O 1.34663 * 119.99616 * 0.02654 * 19 18 17 22 22 C 1.39658 * 119.99540 * 359.70912 * 18 17 16 23 23 N 1.31834 * 119.99745 * 359.97438 * 22 18 17 24 24 C 1.46970 * 118.80727 * 304.76972 * 12 11 10 25 25 C 1.46958 * 120.59737 * 208.21466 * 9 7 2 26 26 H 0.97002 * 119.99147 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.60614 * 5.01335 * 10 9 7 28 28 H 1.08994 * 109.75188 * 244.58248 * 10 9 7 29 29 H 1.08996 * 109.61008 * 169.16880 * 11 10 9 30 30 H 1.08993 * 109.61397 * 289.68767 * 11 10 9 31 31 H 1.08006 * 119.99379 * 359.97438 * 16 15 13 32 32 H 0.96702 * 116.99877 * 179.97438 * 21 19 18 33 33 H 1.08000 * 120.00078 * 180.02562 * 22 18 17 34 34 H 1.09000 * 109.61463 * 295.48068 * 24 12 11 35 35 H 1.09001 * 109.74456 * 175.05231 * 24 12 11 36 36 H 1.09002 * 109.60915 * 354.98917 * 25 9 7 37 37 H 1.08995 * 109.61398 * 115.49922 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1042 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0529 -1.2237 0.2810 9 7 1.3728 -2.3610 -0.3547 10 6 0.2370 -2.3343 -1.2871 11 6 0.5400 -3.2802 -2.4557 12 7 0.9796 -4.5728 -1.9118 13 6 0.3522 -5.7132 -2.2614 14 8 -0.4999 -5.6969 -3.1271 15 6 0.7021 -6.9882 -1.5891 16 6 0.3995 -8.2066 -2.2015 17 7 0.7155 -9.3395 -1.6069 18 6 1.3123 -9.3228 -0.4187 19 6 1.6614 -10.5969 0.2533 20 8 2.2058 -10.5816 1.3383 21 8 1.3748 -11.7715 -0.3397 22 6 1.6095 -8.1046 0.1962 23 7 1.2990 -6.9714 -0.4016 24 6 2.1153 -4.5995 -0.9793 25 6 1.8122 -3.6535 0.1893 26 1 -0.4849 0.8401 -0.0004 27 1 0.0966 -1.3211 -1.6636 28 1 -0.6674 -2.6631 -0.7754 29 1 -0.3598 -3.4222 -3.0542 30 1 1.3307 -2.8558 -3.0743 31 1 -0.0896 -8.2202 -3.1644 32 1 1.6219 -12.5757 0.1370 33 1 2.0946 -8.0910 1.1611 34 1 3.0182 -4.2690 -1.4929 35 1 2.2587 -5.6122 -0.6025 36 1 2.7121 -3.5116 0.7878 37 1 1.0216 -4.0779 0.8080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:10 Heat of formation + Delta-G solvation = -39.802108 kcal Electronic energy + Delta-G solvation = -24794.799181 eV Core-core repulsion = 20959.580303 eV Total energy + Delta-G solvation = -3835.218877 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.88905 -41.27846 -40.52810 -38.55121 -37.28913 -36.26498 -35.40421 -33.36605 -33.04976 -31.89197 -29.06298 -27.73330 -26.07058 -25.51188 -24.51338 -23.62575 -22.50579 -20.84614 -20.00720 -19.08967 -18.75636 -18.40648 -18.12585 -17.39842 -17.05551 -16.70795 -16.39129 -16.21627 -15.98608 -15.60249 -15.48054 -15.20381 -15.03051 -14.76531 -14.17952 -14.04541 -13.79778 -13.20445 -12.92797 -12.80485 -12.65286 -12.52023 -12.47778 -12.22054 -12.12139 -12.01477 -11.77864 -11.68538 -11.50912 -10.88154 -10.60089 -10.32585 -9.87856 -8.66438 -7.88209 -5.36216 -1.39800 -0.35896 0.87130 1.48770 1.49453 1.51870 1.57037 1.58425 1.76571 2.35614 2.50595 2.62432 2.71717 3.01329 3.26704 3.32620 3.62433 3.66873 4.07652 4.24561 4.27464 4.32244 4.42987 4.62634 4.64270 4.74728 4.77537 5.04485 5.13817 5.26510 5.30056 5.43636 5.57024 5.64223 5.66075 6.09930 6.31802 6.36035 6.82524 6.82985 7.10304 7.79645 8.32988 9.17172 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.027577 B = 0.003288 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.086249 B = 8514.016443 C = 9280.358281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.610 5.610 10 C 0.169 3.831 11 C 0.100 3.900 12 N -0.576 5.576 13 C 0.563 3.437 14 O -0.557 6.557 15 C 0.066 3.934 16 C 0.112 3.888 17 N -0.390 5.390 18 C 0.056 3.944 19 C 0.559 3.441 20 O -0.511 6.511 21 O -0.488 6.488 22 C 0.120 3.880 23 N -0.410 5.410 24 C 0.072 3.928 25 C 0.137 3.863 26 H 0.251 0.749 27 H 0.074 0.926 28 H -0.006 1.006 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.207 0.793 32 H 0.440 0.560 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.147 0.853 36 H 0.075 0.925 37 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.835 -21.501 -2.144 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.091 0.909 9 N -0.334 5.334 10 C 0.042 3.958 11 C -0.024 4.024 12 N -0.306 5.306 13 C 0.348 3.652 14 O -0.436 6.436 15 C -0.075 4.075 16 C -0.049 4.049 17 N -0.107 5.107 18 C -0.086 4.086 19 C 0.400 3.600 20 O -0.399 6.399 21 O -0.301 6.301 22 C -0.040 4.040 23 N -0.127 5.127 24 C -0.051 4.051 25 C 0.011 3.989 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.013 0.987 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.224 0.776 32 H 0.303 0.697 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.163 0.837 36 H 0.094 0.906 37 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 4.350 -21.010 -2.482 21.599 hybrid contribution 0.138 0.857 0.483 0.994 sum 4.488 -20.153 -1.999 20.743 Atomic orbital electron populations 1.70169 1.06796 1.26110 1.55079 1.25832 0.95970 1.01647 1.00990 0.85315 0.77508 0.79033 0.78407 1.20263 1.22335 1.20057 1.19522 0.93223 0.85710 1.40990 0.90867 1.44303 1.36383 1.02722 1.49971 1.20908 0.88237 0.97912 0.88722 1.22323 1.00500 0.82472 0.97076 1.48024 1.32214 1.05936 1.44383 1.17968 0.81820 0.83027 0.82361 1.90764 1.34310 1.85844 1.32716 1.22438 0.96507 0.95742 0.92843 1.24049 0.94341 0.85274 1.01278 1.68667 1.05741 1.29357 1.06947 1.21535 0.99918 0.93599 0.93504 1.19854 0.74510 0.83840 0.81814 1.90957 1.39916 1.88017 1.20990 1.84614 1.76093 1.16682 1.52693 1.24407 0.93366 0.85461 1.00771 1.68629 1.07826 1.28791 1.07494 1.23273 0.86589 1.04722 0.90555 1.21322 0.98263 0.85459 0.93895 0.93990 0.90813 0.98741 0.89609 0.90953 0.77616 0.69667 0.76647 0.91737 0.83688 0.90650 0.96625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.50 11.20 21.65 0.24 -54.26 16 2 C -0.05 -2.66 4.91 84.86 0.42 -2.24 16 3 Si 0.97 43.67 29.59 68.60 2.03 45.70 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.26 -14.01 9.58 84.04 0.80 -13.21 16 8 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 9 N -0.61 -29.81 2.97 -698.22 -2.07 -31.88 16 10 C 0.17 8.13 5.51 86.41 0.48 8.60 16 11 C 0.10 3.91 6.58 86.41 0.57 4.47 16 12 N -0.58 -20.16 2.95 -820.88 -2.42 -22.58 16 13 C 0.56 18.26 7.61 86.93 0.66 18.92 16 14 O -0.56 -20.27 15.96 -3.68 -0.06 -20.33 16 15 C 0.07 1.68 6.43 42.02 0.27 1.95 16 16 C 0.11 2.36 10.76 85.05 0.92 3.28 16 17 N -0.39 -7.83 10.27 -183.36 -1.88 -9.72 16 18 C 0.06 1.02 6.76 41.97 0.28 1.30 16 19 C 0.56 8.82 8.33 70.48 0.59 9.41 16 20 O -0.51 -9.68 17.13 20.16 0.35 -9.34 16 21 O -0.49 -5.37 13.26 -55.72 -0.74 -6.11 16 22 C 0.12 2.18 10.77 85.04 0.92 3.10 16 23 N -0.41 -9.63 6.64 -183.28 -1.22 -10.85 16 24 C 0.07 2.30 6.26 86.42 0.54 2.84 16 25 C 0.14 5.37 6.67 86.42 0.58 5.95 16 26 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.07 3.95 5.99 -2.39 -0.01 3.94 16 28 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.09 3.28 7.03 -2.39 -0.02 3.27 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.21 3.67 7.78 -2.91 -0.02 3.65 16 32 H 0.44 0.21 9.11 -74.06 -0.67 -0.46 16 33 H 0.22 2.84 7.64 -2.91 -0.02 2.82 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.15 3.93 3.92 -50.57 -0.20 3.73 16 36 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -70.12 319.63 1.53 -68.59 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 0.28 Total: 6.38 kcal Atomic # 6 Polarization: 37.36 SS G_CDS: 7.02 Total: 44.37 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -7.35 Total: -129.27 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.45 Total: -35.77 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -70.12 1.53 -68.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.791 kcal (2) G-P(sol) polarization free energy of solvation -70.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds