Wall clock time and date at job start Fri Apr 10 2020 17:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86806 * 119.99882 * 2 1 4 4 H 1.48495 * 109.47334 * 269.99670 * 3 2 1 5 5 H 1.48501 * 109.46905 * 30.00278 * 3 2 1 6 6 H 1.48501 * 109.47229 * 149.99646 * 3 2 1 7 7 C 1.40049 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99836 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99798 * 354.99506 * 9 7 2 11 11 N 1.34773 * 120.00024 * 174.99960 * 9 7 2 12 12 C 1.47077 * 120.88616 * 185.24646 * 11 9 7 13 13 C 1.53236 * 108.52543 * 231.16390 * 12 11 9 14 14 N 1.46905 * 109.33781 * 306.16605 * 13 12 11 15 15 C 1.37840 * 110.99830 * 187.25320 * 14 13 12 16 16 N 1.32982 * 120.64369 * 304.92837 * 15 14 13 17 17 C 1.31670 * 120.84974 * 180.02562 * 16 15 14 18 18 N 1.31977 * 122.24273 * 359.97438 * 17 16 15 19 19 C 1.32190 * 121.20055 * 0.02562 * 18 17 16 20 20 C 1.39828 * 118.99262 * 0.02562 * 19 18 17 21 21 C 1.47294 * 120.99791 * 179.97438 * 20 19 18 22 22 O 1.21521 * 119.99967 * 174.95394 * 21 20 19 23 23 O 1.34756 * 120.00298 * 354.95493 * 21 20 19 24 24 C 1.46900 * 111.26538 * 63.10536 * 14 13 12 25 25 C 1.47085 * 120.88121 * 5.22469 * 11 9 7 26 26 H 0.97003 * 120.00088 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.63257 * 111.44547 * 12 11 9 28 28 H 1.09006 * 109.62261 * 350.86918 * 12 11 9 29 29 H 1.09003 * 109.49434 * 186.20454 * 13 12 11 30 30 H 1.09004 * 109.49230 * 66.12073 * 13 12 11 31 31 H 1.07998 * 118.88025 * 180.02562 * 17 16 15 32 32 H 1.08001 * 120.50156 * 179.97438 * 19 18 17 33 33 H 0.96704 * 116.99933 * 180.02562 * 23 21 20 34 34 H 1.09001 * 109.49609 * 56.85893 * 24 14 13 35 35 H 1.09001 * 109.48751 * 176.93814 * 24 14 13 36 36 H 1.09001 * 109.62343 * 248.55000 * 25 11 9 37 37 H 1.08997 * 109.62756 * 9.12115 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4381 2.6527 0.7001 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0617 -2.4825 0.0920 11 7 1.9452 -3.6455 -0.1007 12 6 1.2254 -4.9227 -0.2179 13 6 1.7769 -5.8907 0.8343 14 7 3.2360 -5.9846 0.6916 15 6 3.7504 -6.9656 1.5120 16 7 3.5080 -6.9516 2.8195 17 6 3.9978 -7.8863 3.6070 18 7 4.7442 -8.8734 3.1484 19 6 5.0381 -8.9697 1.8632 20 6 4.5452 -8.0033 0.9810 21 6 4.8458 -8.0674 -0.4595 22 8 4.3342 -7.2723 -1.2230 23 8 5.6882 -9.0077 -0.9309 24 6 3.8811 -4.6904 0.9500 25 6 3.4158 -3.6733 -0.0974 26 1 -0.4850 0.8401 0.0004 27 1 1.3776 -5.3388 -1.2137 28 1 0.1615 -4.7607 -0.0443 29 1 1.3332 -6.8758 0.6904 30 1 1.5319 -5.5229 1.8308 31 1 3.7806 -7.8443 4.6640 32 1 5.6504 -9.7820 1.5002 33 1 5.8550 -9.0099 -1.8835 34 1 3.6068 -4.3394 1.9449 35 1 4.9634 -4.8051 0.8900 36 1 3.7785 -3.9692 -1.0817 37 1 3.8001 -2.6851 0.1556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:27 Heat of formation + Delta-G solvation = -38.902550 kcal Electronic energy + Delta-G solvation = -25288.116487 eV Core-core repulsion = 21452.936618 eV Total energy + Delta-G solvation = -3835.179870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67043 -39.78080 -38.90782 -36.85338 -36.03851 -34.20644 -33.20615 -32.52537 -31.61527 -30.72822 -27.31705 -25.97581 -25.76407 -23.60012 -23.15840 -22.07937 -20.94941 -19.10608 -18.55784 -17.90975 -17.43120 -17.15196 -16.39199 -15.96959 -15.69269 -15.11178 -14.92109 -14.42776 -14.36481 -14.23049 -14.14458 -13.96980 -13.72152 -13.14995 -12.53887 -11.98282 -11.88393 -11.66269 -11.48891 -11.43884 -11.09457 -10.94175 -10.91143 -10.76679 -10.68546 -10.60720 -10.25642 -10.08878 -9.84766 -9.66439 -8.87069 -8.60609 -7.60175 -7.23123 -6.20829 -4.65896 0.05292 0.65585 2.41225 2.72100 3.13320 3.20147 3.23012 3.30882 3.42455 3.75717 3.88232 4.07854 4.49611 4.50100 4.53165 4.57950 5.05725 5.20129 5.37130 5.39264 5.56463 5.64179 5.75289 5.80209 5.88339 5.97906 6.11697 6.32069 6.39730 6.51618 6.55059 6.70544 6.92830 7.08823 7.43926 7.56901 7.66356 7.80285 8.11087 8.34189 9.00970 9.42080 10.56206 10.74721 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.003694 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.842072 B = 7577.203757 C = 7807.875039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.561 3.439 10 O -0.577 6.577 11 N -0.643 5.643 12 C 0.129 3.871 13 C 0.054 3.946 14 N -0.477 5.477 15 C 0.416 3.584 16 N -0.549 5.549 17 C 0.336 3.664 18 N -0.536 5.536 19 C 0.208 3.792 20 C -0.214 4.214 21 C 0.525 3.475 22 O -0.456 6.456 23 O -0.522 6.522 24 C 0.053 3.947 25 C 0.132 3.868 26 H 0.268 0.732 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.202 0.798 32 H 0.184 0.816 33 H 0.416 0.584 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.617 -17.068 2.528 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.367 3.633 10 O -0.460 6.460 11 N -0.382 5.382 12 C 0.004 3.996 13 C -0.073 4.073 14 N -0.200 5.200 15 C 0.178 3.822 16 N -0.267 5.267 17 C 0.048 3.952 18 N -0.251 5.251 19 C 0.041 3.959 20 C -0.222 4.222 21 C 0.364 3.636 22 O -0.340 6.340 23 O -0.336 6.336 24 C -0.073 4.073 25 C 0.008 3.992 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.201 0.799 33 H 0.275 0.725 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.380 -16.730 3.261 20.495 hybrid contribution 0.716 0.791 -0.633 1.240 sum 12.096 -15.939 2.629 20.181 Atomic orbital electron populations 1.70011 1.07077 1.27319 1.35200 1.25721 0.94605 1.00284 0.92560 0.86391 0.80162 0.81472 0.78861 1.19701 1.20456 1.18888 1.20957 0.93540 0.89225 1.54346 0.90960 1.18249 0.86908 0.82115 0.76061 1.90589 1.14360 1.86016 1.55021 1.48245 1.04568 1.05827 1.79568 1.21193 0.97959 0.84124 0.96325 1.22581 0.83806 1.00299 1.00623 1.59977 1.07028 1.05919 1.47122 1.20425 0.85311 0.89831 0.86608 1.68947 1.24650 1.27855 1.05211 1.25168 0.85800 0.83431 1.00792 1.68528 1.16001 1.24905 1.15631 1.23693 0.90180 0.94465 0.87580 1.20684 1.07484 1.00757 0.93272 1.20016 0.76792 0.78526 0.88218 1.91048 1.47360 1.38055 1.57549 1.84501 1.62041 1.54397 1.32647 1.22641 0.97781 0.86680 1.00240 1.21467 0.82906 0.98109 0.96767 0.92071 0.92772 0.89060 0.91104 0.92615 0.78174 0.79946 0.72498 0.92786 0.90978 0.92569 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.94 11.84 55.55 0.66 -22.28 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 19.97 29.56 -169.99 -5.02 14.95 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -15.18 8.85 -35.63 -0.32 -15.50 16 8 H 0.07 1.83 5.74 -52.49 -0.30 1.53 16 9 C 0.56 16.02 7.62 -12.99 -0.10 15.92 16 10 O -0.58 -18.71 14.49 5.20 0.08 -18.64 16 11 N -0.64 -14.95 3.01 -174.13 -0.52 -15.47 16 12 C 0.13 2.63 6.61 -3.61 -0.02 2.61 16 13 C 0.05 0.94 5.33 -3.70 -0.02 0.92 16 14 N -0.48 -7.74 2.72 -172.46 -0.47 -8.21 16 15 C 0.42 5.89 5.30 -154.90 -0.82 5.07 16 16 N -0.55 -7.40 9.89 -13.59 -0.13 -7.54 16 17 C 0.34 3.53 12.26 -92.10 -1.13 2.40 16 18 N -0.54 -5.50 10.41 -14.29 -0.15 -5.65 16 19 C 0.21 1.97 10.89 -16.80 -0.18 1.78 16 20 C -0.21 -2.53 5.92 -104.54 -0.62 -3.15 16 21 C 0.53 6.08 8.26 34.41 0.28 6.36 16 22 O -0.46 -6.92 16.00 -19.28 -0.31 -7.22 16 23 O -0.52 -3.90 12.79 -40.65 -0.52 -4.42 16 24 C 0.05 0.88 5.50 -3.70 -0.02 0.86 16 25 C 0.13 2.55 6.47 -3.60 -0.02 2.53 16 26 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 2.03 7.04 -51.93 -0.37 1.66 16 29 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 30 H 0.06 1.04 7.99 -51.93 -0.41 0.63 16 31 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.18 1.16 7.71 -52.49 -0.40 0.76 16 33 H 0.42 1.43 9.11 45.56 0.42 1.84 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.10 1.94 5.47 -51.93 -0.28 1.66 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -37.02 320.58 -7.65 -44.67 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -3.02 Total: 2.83 kcal Atomic # 6 Polarization: 25.21 SS G_CDS: -3.07 Total: 22.15 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.62 Total: -59.15 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.75 Total: -30.28 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.02 -7.65 -44.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.766 kcal (2) G-P(sol) polarization free energy of solvation -37.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds