Wall clock time and date at job start Fri Apr 10 2020 17:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47212 * 2 1 4 4 C 1.46505 * 120.00309 * 275.00186 * 3 2 1 5 5 C 1.50700 * 109.46944 * 275.00062 * 4 3 2 6 6 H 1.08002 * 120.00260 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99860 * 179.97438 * 5 4 3 8 8 N 1.31504 * 120.00067 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99877 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47026 * 59.99687 * 9 7 5 11 11 H 1.48494 * 109.46935 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46713 * 299.99982 * 9 7 5 13 13 S 1.65605 * 120.00164 * 95.00220 * 3 2 1 14 14 O 1.42096 * 106.40590 * 156.45914 * 13 3 2 15 15 O 1.42108 * 106.39755 * 23.53827 * 13 3 2 16 16 N 1.65597 * 107.21939 * 270.00117 * 13 3 2 17 17 C 1.46499 * 119.99926 * 64.71969 * 16 13 3 18 18 H 1.09005 * 112.85019 * 14.08047 * 17 16 13 19 19 C 1.53786 * 113.61715 * 242.77603 * 17 16 13 20 20 C 1.53780 * 87.08036 * 270.88604 * 19 17 16 21 21 C 1.53784 * 87.08188 * 334.56404 * 20 19 17 22 22 H 1.08997 * 113.61340 * 270.88763 * 21 20 19 23 23 C 1.50697 * 113.69318 * 139.99132 * 21 20 19 24 24 O 1.20823 * 120.00240 * 262.47219 * 23 21 20 25 25 O 1.34230 * 119.99681 * 82.46605 * 23 21 20 26 26 H 1.09004 * 109.47069 * 299.99913 * 1 2 3 27 27 H 1.09000 * 109.46955 * 59.99674 * 1 2 3 28 28 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47069 * 240.00087 * 2 1 3 30 30 H 1.09000 * 109.47475 * 120.00404 * 2 1 3 31 31 H 1.08994 * 109.46767 * 34.99899 * 4 3 2 32 32 H 1.08999 * 109.47434 * 155.00116 * 4 3 2 33 33 H 0.97000 * 120.00486 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00224 * 245.00182 * 16 13 3 35 35 H 1.09000 * 113.61349 * 25.42775 * 19 17 16 36 36 H 1.08999 * 113.61575 * 156.33697 * 19 17 16 37 37 H 1.08998 * 113.61448 * 220.01675 * 20 19 17 38 38 H 1.08999 * 113.69320 * 89.12084 * 20 19 17 39 39 H 0.96702 * 116.99818 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8823 6 1 4.1724 1.1116 -1.3836 7 6 3.8525 2.3606 -3.0849 8 7 3.0272 3.1848 -3.6924 9 14 5.5089 1.9635 -3.8518 10 1 5.5985 0.5035 -4.1080 11 1 5.6508 2.7011 -5.1328 12 1 6.5944 2.3708 -2.9239 13 16 2.4123 2.1202 1.4287 14 8 3.3284 3.1570 1.1050 15 8 2.7096 1.0798 2.3499 16 7 1.0433 2.8642 1.9895 17 6 -0.1200 2.0622 2.3766 18 1 0.1131 1.0028 2.4844 19 6 -1.3690 2.3362 1.5222 20 6 -1.7241 3.4372 2.5354 21 6 -0.9020 2.6450 3.5656 22 1 -1.4845 1.9026 4.1112 23 6 -0.0662 3.5133 4.4703 24 8 1.1031 3.6923 4.2246 25 8 -0.6210 4.0880 5.5491 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.3617 1.8098 -1.9452 32 1 2.0922 3.1803 -1.0756 33 1 3.2790 3.5874 -4.5382 34 1 1.0101 3.8312 2.0579 35 1 -1.1420 2.7162 0.5262 36 1 -2.0791 1.5093 1.5092 37 1 -2.7872 3.4877 2.7707 38 1 -1.2978 4.4104 2.2919 39 1 -0.0452 4.6365 6.0992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605438807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:44 Heat of formation + Delta-G solvation = -133.654080 kcal Electronic energy + Delta-G solvation = -25028.134019 eV Core-core repulsion = 21291.996614 eV Total energy + Delta-G solvation = -3736.137404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.95101 -38.64950 -36.48305 -36.12768 -35.94455 -35.02496 -32.65992 -32.40873 -30.02236 -27.59678 -26.55470 -25.15397 -23.13418 -22.30882 -21.59366 -19.71764 -18.99038 -18.12293 -17.45357 -16.91978 -16.60361 -16.33156 -15.78186 -15.31916 -15.14823 -14.88938 -14.27688 -14.17159 -13.64398 -13.22940 -13.06384 -12.88472 -12.81206 -12.06009 -11.95659 -11.77588 -11.66846 -11.61997 -11.45615 -11.31736 -11.25549 -10.98855 -10.92089 -10.85237 -10.59170 -10.46905 -10.37906 -10.32578 -9.94602 -9.73486 -9.15880 -8.40226 -8.03047 -6.02695 -4.06012 1.33363 2.09440 2.90047 3.36442 3.39829 3.44927 3.57910 4.05432 4.21425 4.28608 4.48514 4.56787 4.68789 5.02705 5.16170 5.23851 5.33107 5.37217 5.44283 5.53896 5.66935 5.70465 5.75994 5.77054 5.89436 6.02815 6.25771 6.34166 6.38241 6.61528 6.68838 7.20718 7.33415 7.49951 7.69816 7.81364 7.95432 8.25710 8.96069 9.58879 11.05889 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.004729 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.681668 B = 5919.630139 C = 6213.776649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.115 3.885 3 N -0.992 5.992 4 C 0.260 3.740 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.785 3.215 14 O -0.964 6.964 15 O -0.999 6.999 16 N -1.099 6.099 17 C 0.155 3.845 18 H 0.112 0.888 19 C -0.157 4.157 20 C -0.119 4.119 21 C -0.120 4.120 22 H 0.133 0.867 23 C 0.483 3.517 24 O -0.494 6.494 25 O -0.521 6.521 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.414 0.586 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.225 -1.787 13.584 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.011 4.011 3 N -0.834 5.834 4 C 0.138 3.862 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.793 3.207 14 O -0.947 6.947 15 O -0.982 6.982 16 N -0.856 5.856 17 C 0.044 3.956 18 H 0.129 0.871 19 C -0.196 4.196 20 C -0.157 4.157 21 C -0.141 4.141 22 H 0.151 0.849 23 C 0.324 3.676 24 O -0.380 6.380 25 O -0.334 6.334 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.249 0.751 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -13.260 -2.053 13.500 19.034 hybrid contribution 0.867 0.694 -0.234 1.135 sum -12.393 -1.358 13.266 18.205 Atomic orbital electron populations 1.22618 0.97466 1.01666 1.02778 1.21141 0.93071 0.83438 1.03495 1.57770 1.81074 1.21290 1.23231 1.18991 0.97232 0.91090 0.78918 1.21475 1.02164 1.27630 1.05455 0.92279 1.24913 0.97301 0.94849 0.96892 1.69901 1.36125 1.30348 1.17241 0.86594 0.84340 0.78379 0.78356 1.20199 1.21219 1.20029 1.01851 0.73008 0.73175 0.72658 1.93631 1.59286 1.57782 1.84035 1.93504 1.83256 1.58343 1.63088 1.55946 1.30560 1.18048 1.81028 1.21610 0.86409 0.95695 0.91843 0.87063 1.23548 0.97276 0.98973 0.99844 1.22851 1.00110 0.98580 0.94155 1.23065 0.98578 0.98698 0.93751 0.84932 1.23310 0.86817 0.78217 0.79211 1.90759 1.17674 1.58438 1.71163 1.84547 1.48240 1.62357 1.38228 0.92195 0.91799 0.92295 0.89804 0.90721 0.94690 0.94599 0.92716 0.75074 0.88932 0.88315 0.89859 0.89477 0.73429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 10.12 37.16 0.38 -2.01 16 2 C 0.12 1.95 6.40 -4.05 -0.03 1.92 16 3 N -0.99 -20.39 2.82 -115.67 -0.33 -20.72 16 4 C 0.26 6.45 5.10 -5.19 -0.03 6.43 16 5 C -0.53 -14.93 9.38 -34.44 -0.32 -15.25 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.24 13.28 55.43 0.74 -25.50 16 9 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 13 S 2.79 58.03 6.07 -107.50 -0.65 57.38 16 14 O -0.96 -24.54 17.11 -57.17 -0.98 -25.52 16 15 O -1.00 -21.89 16.22 -57.17 -0.93 -22.82 16 16 N -1.10 -17.36 4.00 -4.19 -0.02 -17.37 16 17 C 0.15 1.82 3.26 -67.11 -0.22 1.61 16 18 H 0.11 1.29 6.49 -51.93 -0.34 0.95 16 19 C -0.16 -1.41 6.08 -25.92 -0.16 -1.57 16 20 C -0.12 -0.96 7.45 -25.92 -0.19 -1.15 16 21 C -0.12 -1.12 4.23 -90.96 -0.38 -1.50 16 22 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 23 C 0.48 5.55 7.70 36.00 0.28 5.83 16 24 O -0.49 -7.66 14.57 -18.75 -0.27 -7.93 16 25 O -0.52 -4.50 13.42 -39.26 -0.53 -5.03 16 26 H 0.06 0.66 2.39 -51.93 -0.12 0.54 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 30 H 0.07 1.22 6.91 -51.93 -0.36 0.86 16 31 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.41 6.35 7.53 -34.47 -0.26 6.09 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 0.65 7.92 -51.93 -0.41 0.24 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 39 H 0.41 2.04 9.10 45.56 0.41 2.46 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -36.97 332.61 -8.14 -45.11 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.39 Total: 4.34 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.77 Total: -4.01 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: 0.39 Total: -63.60 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -2.71 Total: -61.30 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 58.03 SS G_CDS: -0.65 Total: 57.38 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.97 -8.14 -45.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.548 kcal (2) G-P(sol) polarization free energy of solvation -36.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds