Wall clock time and date at job start Fri Apr 10 2020 17:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47212 * 2 1 4 4 C 1.46505 * 120.00309 * 275.00186 * 3 2 1 5 5 C 1.50700 * 109.46944 * 275.00062 * 4 3 2 6 6 H 1.08002 * 120.00260 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99860 * 179.97438 * 5 4 3 8 8 N 1.31504 * 120.00067 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99877 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47026 * 59.99687 * 9 7 5 11 11 H 1.48494 * 109.46935 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46713 * 299.99982 * 9 7 5 13 13 S 1.65605 * 120.00164 * 95.00220 * 3 2 1 14 14 O 1.42096 * 106.40590 * 156.45914 * 13 3 2 15 15 O 1.42108 * 106.39755 * 23.53827 * 13 3 2 16 16 N 1.65597 * 107.21939 * 270.00117 * 13 3 2 17 17 C 1.46499 * 119.99926 * 64.71969 * 16 13 3 18 18 H 1.09005 * 112.85019 * 14.08047 * 17 16 13 19 19 C 1.53786 * 113.61715 * 242.77603 * 17 16 13 20 20 C 1.53780 * 87.08036 * 270.88604 * 19 17 16 21 21 C 1.53784 * 87.08188 * 334.56404 * 20 19 17 22 22 H 1.08997 * 113.61340 * 270.88763 * 21 20 19 23 23 C 1.50697 * 113.69318 * 139.99132 * 21 20 19 24 24 O 1.20823 * 120.00240 * 262.47219 * 23 21 20 25 25 O 1.34230 * 119.99681 * 82.46605 * 23 21 20 26 26 H 1.09004 * 109.47069 * 299.99913 * 1 2 3 27 27 H 1.09000 * 109.46955 * 59.99674 * 1 2 3 28 28 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47069 * 240.00087 * 2 1 3 30 30 H 1.09000 * 109.47475 * 120.00404 * 2 1 3 31 31 H 1.08994 * 109.46767 * 34.99899 * 4 3 2 32 32 H 1.08999 * 109.47434 * 155.00116 * 4 3 2 33 33 H 0.97000 * 120.00486 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00224 * 245.00182 * 16 13 3 35 35 H 1.09000 * 113.61349 * 25.42775 * 19 17 16 36 36 H 1.08999 * 113.61575 * 156.33697 * 19 17 16 37 37 H 1.08998 * 113.61448 * 220.01675 * 20 19 17 38 38 H 1.08999 * 113.69320 * 89.12084 * 20 19 17 39 39 H 0.96702 * 116.99818 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8823 6 1 4.1724 1.1116 -1.3836 7 6 3.8525 2.3606 -3.0849 8 7 3.0272 3.1848 -3.6924 9 14 5.5089 1.9635 -3.8518 10 1 5.5985 0.5035 -4.1080 11 1 5.6508 2.7011 -5.1328 12 1 6.5944 2.3708 -2.9239 13 16 2.4123 2.1202 1.4287 14 8 3.3284 3.1570 1.1050 15 8 2.7096 1.0798 2.3499 16 7 1.0433 2.8642 1.9895 17 6 -0.1200 2.0622 2.3766 18 1 0.1131 1.0028 2.4844 19 6 -1.3690 2.3362 1.5222 20 6 -1.7241 3.4372 2.5354 21 6 -0.9020 2.6450 3.5656 22 1 -1.4845 1.9026 4.1112 23 6 -0.0662 3.5133 4.4703 24 8 1.1031 3.6923 4.2246 25 8 -0.6210 4.0880 5.5491 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.3617 1.8098 -1.9452 32 1 2.0922 3.1803 -1.0756 33 1 3.2790 3.5874 -4.5382 34 1 1.0101 3.8312 2.0579 35 1 -1.1420 2.7162 0.5262 36 1 -2.0791 1.5093 1.5092 37 1 -2.7872 3.4877 2.7707 38 1 -1.2978 4.4104 2.2919 39 1 -0.0452 4.6365 6.0992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605438807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:44 Heat of formation + Delta-G solvation = -163.641611 kcal Electronic energy + Delta-G solvation = -25029.434376 eV Core-core repulsion = 21291.996614 eV Total energy + Delta-G solvation = -3737.437761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80744 -39.49590 -38.23141 -37.62768 -36.96373 -36.81423 -34.70897 -33.59742 -31.53453 -28.58010 -28.26192 -26.00267 -24.91635 -23.46016 -22.80530 -20.70831 -20.24392 -19.23780 -18.88712 -18.35512 -18.22492 -17.86400 -16.98491 -16.78291 -16.33904 -16.09033 -15.83275 -15.38642 -14.80461 -14.67382 -14.47745 -14.07767 -13.77829 -13.60892 -13.46901 -13.29525 -13.13975 -13.10291 -13.02206 -12.75793 -12.68343 -12.53348 -12.37584 -12.17221 -12.07558 -11.77454 -11.70676 -11.49869 -11.44320 -11.29872 -10.58840 -10.29305 -9.76781 -8.19664 -6.30860 -0.28867 1.23570 1.37958 1.41996 1.48881 2.06209 2.23160 2.40771 2.68539 3.11150 3.22555 3.50398 3.54859 3.80895 4.01941 4.02353 4.20416 4.48713 4.52808 4.56078 4.75061 4.76186 4.79649 4.93141 5.04524 5.11012 5.18054 5.20938 5.22228 5.46896 5.49141 5.58662 5.65474 5.73820 5.93757 6.11556 6.19564 6.76888 7.05158 7.37478 8.87545 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.004729 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.681668 B = 5919.630139 C = 6213.776649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 N -0.993 5.993 4 C 0.278 3.722 5 C -0.551 4.551 6 H 0.048 0.952 7 C 0.014 3.986 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.262 1.262 11 H -0.275 1.275 12 H -0.281 1.281 13 S 2.799 3.201 14 O -1.020 7.020 15 O -1.013 7.013 16 N -1.088 6.088 17 C 0.123 3.877 18 H 0.115 0.885 19 C -0.148 4.148 20 C -0.111 4.111 21 C -0.111 4.111 22 H 0.172 0.828 23 C 0.483 3.517 24 O -0.545 6.545 25 O -0.511 6.511 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.011 0.989 33 H 0.267 0.733 34 H 0.416 0.584 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.525 -2.878 14.327 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.021 4.021 3 N -0.835 5.835 4 C 0.154 3.846 5 C -0.591 4.591 6 H 0.066 0.934 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.778 3.222 10 H -0.187 1.187 11 H -0.199 1.199 12 H -0.207 1.207 13 S 2.807 3.193 14 O -1.004 7.004 15 O -0.996 6.996 16 N -0.849 5.849 17 C 0.015 3.985 18 H 0.133 0.867 19 C -0.187 4.187 20 C -0.148 4.148 21 C -0.132 4.132 22 H 0.189 0.811 23 C 0.327 3.673 24 O -0.435 6.435 25 O -0.324 6.324 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.252 0.748 35 H 0.093 0.907 36 H 0.152 0.848 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -15.594 -3.166 14.271 21.375 hybrid contribution 1.512 1.038 -0.333 1.864 sum -14.083 -2.128 13.938 19.928 Atomic orbital electron populations 1.22551 0.93830 1.03869 1.03322 1.21435 0.96191 0.81271 1.03206 1.57594 1.81674 1.22673 1.21551 1.18519 0.95719 0.90075 0.80272 1.21835 1.03525 1.27682 1.06009 0.93354 1.25699 1.00729 0.94718 0.97408 1.69985 1.37671 1.30936 1.17634 0.85688 0.79824 0.79024 0.77652 1.18709 1.19942 1.20690 1.01118 0.73371 0.72308 0.72520 1.93543 1.62498 1.59511 1.84861 1.93471 1.84036 1.58874 1.63267 1.55427 1.30718 1.18189 1.80561 1.22143 0.86034 0.95508 0.94823 0.86746 1.23583 0.96033 1.00457 0.98633 1.22842 1.01639 0.97460 0.92850 1.23220 0.97794 0.99188 0.92990 0.81087 1.23793 0.86292 0.77756 0.79485 1.90757 1.19919 1.60355 1.72482 1.84508 1.48227 1.62154 1.37546 0.90315 0.92609 0.89194 0.91012 0.90100 0.94814 0.97101 0.92391 0.74778 0.90676 0.84787 0.86679 0.90869 0.71633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.15 10.12 71.98 0.73 -3.42 16 2 C 0.10 3.49 6.40 86.38 0.55 4.04 16 3 N -0.99 -41.77 2.82 -519.86 -1.47 -43.23 16 4 C 0.28 14.27 5.10 85.63 0.44 14.71 16 5 C -0.55 -32.02 9.38 25.60 0.24 -31.78 16 6 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.81 5.46 84.66 0.46 1.27 16 8 N -0.92 -54.71 13.28 21.45 0.28 -54.42 16 9 Si 0.95 45.61 29.54 68.60 2.03 47.64 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 13 S 2.80 120.18 6.07 -56.49 -0.34 119.83 16 14 O -1.02 -54.69 17.11 -128.00 -2.19 -56.88 16 15 O -1.01 -45.08 16.22 -128.00 -2.08 -47.15 16 16 N -1.09 -34.63 4.00 -167.18 -0.67 -35.30 16 17 C 0.12 2.67 3.26 45.52 0.15 2.82 16 18 H 0.11 2.38 6.49 -2.38 -0.02 2.36 16 19 C -0.15 -2.20 6.08 31.12 0.19 -2.01 16 20 C -0.11 -1.41 7.45 31.12 0.23 -1.18 16 21 C -0.11 -1.72 4.23 -11.01 -0.05 -1.76 16 22 H 0.17 1.36 8.14 -2.39 -0.02 1.34 16 23 C 0.48 10.29 7.70 71.24 0.55 10.84 16 24 O -0.55 -16.92 14.57 21.97 0.32 -16.60 16 25 O -0.51 -7.62 13.42 -51.42 -0.69 -8.31 16 26 H 0.08 1.52 2.39 -2.39 -0.01 1.52 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.07 2.55 8.11 -2.39 -0.02 2.53 16 30 H 0.08 2.59 6.91 -2.39 -0.02 2.57 16 31 H 0.03 1.72 8.11 -2.39 -0.02 1.71 16 32 H 0.01 0.61 7.61 -2.39 -0.02 0.60 16 33 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.42 13.17 7.53 -96.74 -0.73 12.44 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.13 1.08 7.92 -2.39 -0.02 1.07 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 1.16 8.06 -2.39 -0.02 1.14 16 39 H 0.42 3.49 9.10 -74.06 -0.67 2.82 16 Total: -1.00 -83.00 332.61 -1.62 -84.61 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.31 Total: 16.27 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 3.49 Total: -6.46 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -1.85 Total: -132.96 kcal Atomic # 8 Polarization: -124.30 SS G_CDS: -4.64 Total: -128.94 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 120.18 SS G_CDS: -0.34 Total: 119.83 kcal Total: -83.00 -1.62 -84.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.028 kcal (2) G-P(sol) polarization free energy of solvation -82.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds