Wall clock time and date at job start Fri Apr 10 2020 17:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00196 * 2 1 4 4 C 1.50698 * 109.46726 * 274.99621 * 3 2 1 5 5 H 1.08006 * 120.00332 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99989 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99520 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00103 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47204 * 60.00291 * 8 6 4 10 10 H 1.48496 * 109.47045 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47507 * 300.00223 * 8 6 4 12 12 S 1.65604 * 119.99551 * 179.97438 * 2 1 3 13 13 O 1.42106 * 106.39678 * 156.46100 * 12 2 1 14 14 O 1.42091 * 106.40299 * 23.54266 * 12 2 1 15 15 N 1.65598 * 107.21749 * 270.00133 * 12 2 1 16 16 C 1.46497 * 119.99981 * 65.00421 * 15 12 2 17 17 C 1.53783 * 113.61369 * 214.99825 * 16 15 12 18 18 C 1.53781 * 87.08084 * 219.93718 * 17 16 15 19 19 C 1.52996 * 113.61502 * 139.98224 * 18 17 16 20 20 C 1.50706 * 109.47215 * 176.52782 * 19 18 17 21 21 O 1.20825 * 119.99859 * 359.97438 * 20 19 18 22 22 O 1.34224 * 120.00295 * 180.02562 * 20 19 18 23 23 C 1.53776 * 87.17326 * 25.39111 * 18 17 16 24 24 H 1.09002 * 109.47390 * 270.00559 * 1 2 3 25 25 H 1.09010 * 109.46781 * 30.00202 * 1 2 3 26 26 H 1.08998 * 109.47421 * 150.00215 * 1 2 3 27 27 H 1.08999 * 109.46938 * 34.99523 * 3 2 1 28 28 H 1.08999 * 109.47178 * 155.00314 * 3 2 1 29 29 H 0.97003 * 119.99861 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99845 * 245.00185 * 15 12 2 31 31 H 1.08993 * 112.84964 * 346.19284 * 16 15 12 32 32 H 1.08993 * 113.61633 * 105.38438 * 17 16 15 33 33 H 1.09004 * 113.61285 * 334.48092 * 17 16 15 34 34 H 1.09007 * 113.61014 * 270.79905 * 18 17 16 35 35 H 1.08997 * 109.47192 * 56.52868 * 19 18 17 36 36 H 1.09000 * 109.47459 * 296.52948 * 19 18 17 37 37 H 0.96700 * 117.00196 * 179.97438 * 22 20 19 38 38 H 1.08998 * 113.62069 * 89.16241 * 23 18 17 39 39 H 1.09002 * 113.61359 * 220.06279 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1936 -2.2332 6 6 2.9999 2.9507 -1.6665 7 7 3.5026 3.6473 -0.6707 8 14 3.1790 3.5662 -3.4210 9 1 1.8329 3.7712 -4.0135 10 1 3.9214 4.8522 -3.4210 11 1 3.9256 2.5642 -4.2233 12 16 2.2929 -1.4342 0.0006 13 8 3.5759 -1.1571 -0.5439 14 8 1.4113 -2.4067 -0.5434 15 7 2.5379 -1.8581 1.5826 16 6 1.3945 -2.1768 2.4411 17 6 1.5770 -1.7302 3.9013 18 6 0.9088 -3.0545 4.3073 19 6 1.5536 -3.7178 5.5260 20 6 0.7778 -4.9567 5.8927 21 8 -0.1916 -5.2760 5.2460 22 8 1.1631 -5.7049 6.9384 23 6 1.3974 -3.6244 2.9652 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8901 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6502 2.0043 0.5894 28 1 3.1858 1.1176 0.4343 29 1 3.9661 4.4809 -0.8473 30 1 3.4387 -1.8953 1.9408 31 1 0.4419 -1.8728 2.0073 32 1 0.9934 -0.8481 4.1642 33 1 2.6203 -1.6557 4.2079 34 1 -0.1765 -2.9900 4.3852 35 1 1.5453 -3.0223 6.3651 36 1 2.5823 -3.9899 5.2898 37 1 0.6340 -6.4900 7.1352 38 1 2.3915 -4.0687 3.0153 39 1 0.6689 -4.2692 2.4736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606105875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:46 Heat of formation + Delta-G solvation = -153.381763 kcal Electronic energy + Delta-G solvation = -23601.454343 eV Core-core repulsion = 19864.461482 eV Total energy + Delta-G solvation = -3736.992861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71175 -39.16470 -36.56009 -36.39528 -35.48033 -35.13203 -33.44911 -32.42713 -30.15975 -27.77619 -25.82107 -25.06245 -23.95800 -22.28335 -21.35745 -19.99274 -18.83396 -18.29358 -17.27669 -16.97811 -16.64424 -16.36138 -16.30341 -15.99023 -15.16270 -15.05751 -14.31847 -13.74406 -13.57369 -13.42454 -13.28083 -12.72877 -12.57846 -12.50494 -12.22375 -12.15647 -11.94369 -11.80978 -11.58988 -11.40660 -11.16347 -11.07970 -11.04751 -10.91765 -10.71353 -10.62414 -10.52098 -10.42279 -10.02683 -9.77010 -9.23545 -8.43740 -8.06087 -6.06100 -4.09939 1.25693 1.91997 2.72626 3.34294 3.37671 3.42359 3.53282 4.12712 4.27835 4.32655 4.45408 4.54438 4.72390 4.82274 4.99388 5.04511 5.18906 5.22069 5.29298 5.38005 5.58870 5.65288 5.68652 5.87978 5.93046 5.96473 5.98594 6.19120 6.26887 6.44313 6.56468 7.11050 7.26897 7.43114 7.58366 7.62182 7.91556 8.21173 8.92235 9.55190 11.02495 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.033806 B = 0.003123 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.053489 B = 8963.477547 C = 9186.172586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.996 5.996 3 C 0.259 3.741 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.779 3.221 13 O -0.966 6.966 14 O -0.997 6.997 15 N -1.121 6.121 16 C 0.136 3.864 17 C -0.138 4.138 18 C -0.104 4.104 19 C -0.102 4.102 20 C 0.476 3.524 21 O -0.511 6.511 22 O -0.522 6.522 23 C -0.147 4.147 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.264 0.736 30 H 0.412 0.588 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.409 0.591 38 H 0.086 0.914 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 -13.591 15.869 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.839 5.839 3 C 0.137 3.863 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.786 3.214 13 O -0.949 6.949 14 O -0.980 6.980 15 N -0.877 5.877 16 C 0.028 3.972 17 C -0.178 4.178 18 C -0.123 4.123 19 C -0.140 4.140 20 C 0.319 3.681 21 O -0.399 6.399 22 O -0.334 6.334 23 C -0.186 4.186 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.245 0.755 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.267 0.733 38 H 0.105 0.895 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.659 -13.618 14.766 20.621 hybrid contribution 0.064 0.131 -0.243 0.283 sum -4.596 -13.488 14.523 20.346 Atomic orbital electron populations 1.21388 0.80304 1.03602 1.00087 1.57597 1.14203 1.23332 1.88751 1.19028 0.90981 0.78737 0.97588 1.21473 1.36154 1.06304 0.92986 0.92240 1.24929 0.95106 0.96494 0.97485 1.69907 1.37323 1.15350 1.30987 0.86572 0.78304 0.77980 0.84692 1.20178 1.21176 1.19994 1.02030 0.73408 0.72940 0.72988 1.93643 1.40709 1.84859 1.75717 1.93533 1.67571 1.60058 1.76864 1.56247 1.14016 1.85269 1.32151 1.22078 0.89518 0.95425 0.90218 1.23450 1.01922 0.96893 0.95506 1.22328 1.01076 0.96352 0.92548 1.21405 1.00215 0.92011 1.00324 1.23645 0.83106 0.84704 0.76667 1.90741 1.27345 1.70626 1.51166 1.84548 1.59415 1.40708 1.48746 1.23600 1.02174 0.97448 0.95391 0.94368 0.90334 0.91538 0.94743 0.94459 0.92647 0.75483 0.87153 0.90180 0.89014 0.87666 0.87331 0.87408 0.73266 0.89543 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.26 59.85 0.61 2.17 16 2 N -1.00 -20.29 3.23 -123.05 -0.40 -20.69 16 3 C 0.26 6.41 5.08 -5.19 -0.03 6.38 16 4 C -0.53 -14.88 9.38 -34.44 -0.32 -15.20 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.07 13.29 55.43 0.74 -25.33 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 S 2.78 54.21 6.04 -107.50 -0.65 53.56 16 13 O -0.97 -22.95 17.11 -57.17 -0.98 -23.93 16 14 O -1.00 -20.69 16.50 -57.17 -0.94 -21.63 16 15 N -1.12 -15.77 5.85 -4.12 -0.02 -15.79 16 16 C 0.14 1.59 4.37 -67.03 -0.29 1.29 16 17 C -0.14 -1.21 7.43 -25.92 -0.19 -1.40 16 18 C -0.10 -0.87 3.11 -89.81 -0.28 -1.15 16 19 C -0.10 -0.66 5.64 -27.88 -0.16 -0.82 16 20 C 0.48 3.97 8.33 36.01 0.30 4.27 16 21 O -0.51 -6.01 16.55 -18.75 -0.31 -6.32 16 22 O -0.52 -3.27 13.42 -39.24 -0.53 -3.80 16 23 C -0.15 -1.51 7.45 -25.83 -0.19 -1.71 16 24 H 0.04 0.52 7.71 -51.93 -0.40 0.12 16 25 H 0.08 1.36 8.07 -51.92 -0.42 0.94 16 26 H 0.07 1.07 7.02 -51.93 -0.36 0.70 16 27 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 28 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.41 4.97 8.94 -34.47 -0.31 4.67 16 31 H 0.11 1.30 7.17 -51.93 -0.37 0.93 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.11 0.94 7.73 -51.93 -0.40 0.54 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.11 0.57 7.88 -51.93 -0.41 0.16 16 37 H 0.41 1.01 9.10 45.56 0.41 1.42 16 38 H 0.09 0.81 7.92 -51.93 -0.41 0.40 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -36.80 345.25 -8.28 -45.08 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.72 Total: 1.28 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.65 Total: -4.49 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.32 Total: -61.81 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -2.76 Total: -55.68 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 54.21 SS G_CDS: -0.65 Total: 53.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.80 -8.28 -45.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606105875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.303 kcal (2) G-P(sol) polarization free energy of solvation -36.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds