Wall clock time and date at job start Fri Apr 10 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40054 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99974 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00021 * 354.99903 * 9 7 2 11 11 N 1.34777 * 119.99973 * 175.00129 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94916 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.37909 * 111.00107 * 172.60460 * 14 13 12 16 16 N 1.32687 * 119.03358 * 124.03175 * 15 14 13 17 17 C 1.31944 * 120.90266 * 179.71878 * 16 15 14 18 18 C 1.40170 * 119.00221 * 0.54312 * 17 16 15 19 19 C 1.47419 * 120.86765 * 179.70979 * 18 17 16 20 20 O 1.21516 * 119.99677 * 180.02562 * 19 18 17 21 21 O 1.34745 * 120.00169 * 0.02562 * 19 18 17 22 22 C 1.40158 * 118.25736 * 359.73432 * 18 17 16 23 23 N 1.31951 * 119.00323 * 359.97438 * 22 18 17 24 24 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 25 25 C 1.47076 * 120.88062 * 185.22697 * 11 9 7 26 26 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 28 28 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 29 29 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 30 30 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 31 31 H 1.08001 * 120.49914 * 180.30143 * 17 16 15 32 32 H 0.96705 * 116.99503 * 180.02562 * 21 19 18 33 33 H 1.07997 * 120.50151 * 180.02562 * 22 18 17 34 34 H 1.08990 * 109.48920 * 303.14777 * 24 14 13 35 35 H 1.08999 * 109.51460 * 183.07675 * 24 14 13 36 36 H 1.08999 * 109.63197 * 350.89564 * 25 11 9 37 37 H 1.09008 * 109.62635 * 111.48013 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0616 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7513 -6.9663 1.5088 16 7 2.9247 -7.6584 2.2824 17 6 3.3771 -8.6094 3.0773 18 6 4.7531 -8.8751 3.1043 19 6 5.3038 -9.9240 3.9816 20 8 6.4994 -10.1408 3.9928 21 8 4.4814 -10.6424 4.7711 22 6 5.5917 -8.1171 2.2757 23 7 5.0594 -7.1875 1.5052 24 6 1.7771 -5.8907 0.8322 25 6 1.2249 -4.9226 -0.2195 26 1 -0.4850 0.8400 0.0004 27 1 3.7736 -3.9711 -1.0920 28 1 3.8007 -2.6840 0.1423 29 1 3.6077 -4.3397 1.9417 30 1 4.9637 -4.8055 0.8864 31 1 2.6979 -9.1720 3.7006 32 1 4.8889 -11.3189 5.3293 33 1 6.6575 -8.2916 2.2674 34 1 1.5328 -5.5231 1.8288 35 1 1.3329 -6.8757 0.6888 36 1 0.1612 -4.7606 -0.0453 37 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608178619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:53 Heat of formation + Delta-G solvation = -42.525270 kcal Electronic energy + Delta-G solvation = -24438.915437 eV Core-core repulsion = 20603.578475 eV Total energy + Delta-G solvation = -3835.336963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67674 -40.25311 -38.82183 -36.75484 -36.46108 -34.19060 -33.86488 -32.58397 -31.46363 -30.84417 -27.53204 -26.19735 -25.09713 -24.42449 -22.95233 -22.15909 -21.03151 -19.18240 -18.78943 -18.09930 -17.48703 -17.33738 -16.55589 -16.12817 -15.68323 -15.34558 -14.89044 -14.53760 -14.47872 -14.25271 -14.14463 -14.03091 -13.77100 -13.42405 -12.60597 -12.10013 -12.01992 -11.93344 -11.60308 -11.41973 -11.25041 -11.18367 -11.01127 -10.93551 -10.85887 -10.76727 -10.44060 -10.27629 -10.12013 -9.48498 -8.92407 -8.62670 -7.68024 -7.35976 -6.26925 -4.72728 0.06622 0.82113 2.13180 2.56377 2.96709 3.09810 3.17243 3.19989 3.46038 3.79408 4.02189 4.16515 4.36585 4.44022 4.46223 4.50507 4.95211 5.13040 5.26381 5.30349 5.49668 5.53172 5.60814 5.70021 5.83269 5.95735 6.02523 6.03631 6.29900 6.38701 6.44263 6.53885 6.63359 6.99314 7.38001 7.45858 7.46849 7.81288 8.02485 8.24878 8.94843 9.32226 10.48939 10.67479 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.030211 B = 0.002889 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.589936 B = 9690.357080 C =10092.290072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.575 6.575 11 N -0.647 5.647 12 C 0.128 3.872 13 C 0.052 3.948 14 N -0.452 5.452 15 C 0.530 3.470 16 N -0.558 5.558 17 C 0.241 3.759 18 C -0.292 4.292 19 C 0.547 3.453 20 O -0.517 6.517 21 O -0.513 6.513 22 C 0.248 3.752 23 N -0.536 5.536 24 C 0.056 3.944 25 C 0.121 3.879 26 H 0.269 0.731 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.182 0.818 32 H 0.417 0.583 33 H 0.183 0.817 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.777 -16.835 6.799 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.458 6.458 11 N -0.386 5.386 12 C 0.002 3.998 13 C -0.074 4.074 14 N -0.169 5.169 15 C 0.177 3.823 16 N -0.278 5.278 17 C 0.071 3.929 18 C -0.301 4.301 19 C 0.390 3.610 20 O -0.406 6.406 21 O -0.325 6.325 22 C 0.078 3.922 23 N -0.254 5.254 24 C -0.071 4.071 25 C -0.004 4.004 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.199 0.801 32 H 0.276 0.724 33 H 0.200 0.800 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.691 -15.704 5.408 18.745 hybrid contribution 1.047 -0.423 1.535 1.905 sum 9.738 -16.127 6.943 20.077 Atomic orbital electron populations 1.70006 1.07101 1.27455 1.34935 1.25732 0.94630 1.00361 0.92525 0.86375 0.80209 0.81364 0.78882 1.19718 1.18782 1.20410 1.20952 0.93560 0.89174 1.54414 0.90884 1.18271 0.86938 0.82073 0.76132 1.90599 1.14327 1.85915 1.54923 1.48358 1.04573 1.05964 1.79753 1.21654 0.82927 0.98589 0.96581 1.22925 0.99575 0.84841 1.00084 1.58110 1.08609 1.06205 1.43936 1.21547 0.85659 0.91284 0.83796 1.68614 1.39583 1.10779 1.08775 1.23538 0.92216 0.87820 0.89329 1.20573 0.97245 1.04638 1.07617 1.20199 0.83846 0.79531 0.77394 1.90915 1.16485 1.67211 1.65996 1.84536 1.44152 1.49937 1.53852 1.23355 1.00740 0.84150 0.84005 1.68255 1.12525 1.20667 1.23916 1.22643 0.82394 1.01454 1.00599 1.21329 0.98623 0.84163 0.96236 0.91982 0.92439 0.87680 0.92806 0.88391 0.80130 0.72398 0.80006 0.92190 0.89075 0.88526 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.41 11.84 55.55 0.66 -21.75 16 2 C 0.09 2.37 5.50 -17.36 -0.10 2.27 16 3 Si 0.91 19.47 29.56 -169.99 -5.02 14.45 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.54 -14.68 8.86 -35.63 -0.32 -14.99 16 8 H 0.07 1.77 5.74 -52.49 -0.30 1.47 16 9 C 0.56 15.37 7.63 -12.99 -0.10 15.27 16 10 O -0.58 -18.07 14.49 5.20 0.08 -18.00 16 11 N -0.65 -14.17 3.00 -173.84 -0.52 -14.69 16 12 C 0.13 2.26 6.50 -3.36 -0.02 2.24 16 13 C 0.05 0.80 5.50 -3.46 -0.02 0.78 16 14 N -0.45 -7.01 4.67 -174.87 -0.82 -7.83 16 15 C 0.53 7.62 7.16 -323.04 -2.31 5.31 16 16 N -0.56 -7.35 8.61 -13.64 -0.12 -7.47 16 17 C 0.24 2.44 10.89 -16.78 -0.18 2.26 16 18 C -0.29 -2.90 5.90 -104.71 -0.62 -3.52 16 19 C 0.55 4.92 8.28 34.47 0.29 5.20 16 20 O -0.52 -5.92 17.22 -19.28 -0.33 -6.25 16 21 O -0.51 -3.01 12.77 -40.61 -0.52 -3.53 16 22 C 0.25 2.66 10.87 -16.78 -0.18 2.48 16 23 N -0.54 -7.10 9.59 -13.65 -0.13 -7.23 16 24 C 0.06 0.91 4.78 -3.70 -0.02 0.89 16 25 C 0.12 2.29 6.61 -3.60 -0.02 2.27 16 26 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 27 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.11 1.90 5.46 -51.93 -0.28 1.62 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.35 7.49 -51.93 -0.39 0.96 16 31 H 0.18 1.29 7.70 -52.49 -0.40 0.89 16 32 H 0.42 0.62 9.11 45.56 0.42 1.03 16 33 H 0.18 1.56 7.74 -52.49 -0.41 1.16 16 34 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 35 H 0.09 1.33 7.61 -51.93 -0.40 0.93 16 36 H 0.10 2.01 7.04 -51.93 -0.37 1.65 16 37 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -35.77 320.29 -8.46 -44.24 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -2.95 Total: 2.77 kcal Atomic # 6 Polarization: 24.06 SS G_CDS: -3.60 Total: 20.46 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.93 Total: -58.97 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.78 Total: -27.78 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.77 -8.46 -44.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.710 kcal (2) G-P(sol) polarization free energy of solvation -35.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds