Wall clock time and date at job start Fri Apr 10 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40054 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99974 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00021 * 354.99903 * 9 7 2 11 11 N 1.34777 * 119.99973 * 175.00129 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94916 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.37909 * 111.00107 * 172.60460 * 14 13 12 16 16 N 1.32687 * 119.03358 * 124.03175 * 15 14 13 17 17 C 1.31944 * 120.90266 * 179.71878 * 16 15 14 18 18 C 1.40170 * 119.00221 * 0.54312 * 17 16 15 19 19 C 1.47419 * 120.86765 * 179.70979 * 18 17 16 20 20 O 1.21516 * 119.99677 * 180.02562 * 19 18 17 21 21 O 1.34745 * 120.00169 * 0.02562 * 19 18 17 22 22 C 1.40158 * 118.25736 * 359.73432 * 18 17 16 23 23 N 1.31951 * 119.00323 * 359.97438 * 22 18 17 24 24 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 25 25 C 1.47076 * 120.88062 * 185.22697 * 11 9 7 26 26 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 28 28 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 29 29 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 30 30 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 31 31 H 1.08001 * 120.49914 * 180.30143 * 17 16 15 32 32 H 0.96705 * 116.99503 * 180.02562 * 21 19 18 33 33 H 1.07997 * 120.50151 * 180.02562 * 22 18 17 34 34 H 1.08990 * 109.48920 * 303.14777 * 24 14 13 35 35 H 1.08999 * 109.51460 * 183.07675 * 24 14 13 36 36 H 1.08999 * 109.63197 * 350.89564 * 25 11 9 37 37 H 1.09008 * 109.62635 * 111.48013 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0616 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7513 -6.9663 1.5088 16 7 2.9247 -7.6584 2.2824 17 6 3.3771 -8.6094 3.0773 18 6 4.7531 -8.8751 3.1043 19 6 5.3038 -9.9240 3.9816 20 8 6.4994 -10.1408 3.9928 21 8 4.4814 -10.6424 4.7711 22 6 5.5917 -8.1171 2.2757 23 7 5.0594 -7.1875 1.5052 24 6 1.7771 -5.8907 0.8322 25 6 1.2249 -4.9226 -0.2195 26 1 -0.4850 0.8400 0.0004 27 1 3.7736 -3.9711 -1.0920 28 1 3.8007 -2.6840 0.1423 29 1 3.6077 -4.3397 1.9417 30 1 4.9637 -4.8055 0.8864 31 1 2.6979 -9.1720 3.7006 32 1 4.8889 -11.3189 5.3293 33 1 6.6575 -8.2916 2.2674 34 1 1.5328 -5.5231 1.8288 35 1 1.3329 -6.8757 0.6888 36 1 0.1612 -4.7606 -0.0453 37 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608178619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:53 Heat of formation + Delta-G solvation = -68.978831 kcal Electronic energy + Delta-G solvation = -24440.062550 eV Core-core repulsion = 20603.578475 eV Total energy + Delta-G solvation = -3836.484075 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.62612 -41.06143 -40.23599 -38.43853 -37.12022 -35.47386 -35.12177 -34.62637 -32.57191 -32.25093 -29.14873 -27.85443 -26.15255 -25.47778 -24.28112 -23.16584 -22.46092 -20.80157 -19.56994 -19.28346 -18.42508 -18.22853 -18.15753 -17.52184 -16.95019 -16.38933 -16.31119 -15.99944 -15.85237 -15.66192 -15.55323 -14.93072 -14.77238 -14.53237 -14.43318 -13.54563 -13.40568 -13.14377 -12.97294 -12.77080 -12.72733 -12.61156 -12.37746 -12.29757 -12.14350 -12.03782 -11.95472 -11.70298 -11.44579 -10.92616 -10.43028 -9.80764 -9.75081 -9.15578 -8.29151 -6.84112 -0.82295 -0.03329 1.34736 1.42147 1.42812 1.58250 1.81153 2.02298 2.24634 2.45812 2.55483 2.77792 2.90002 3.30557 3.43370 3.57052 3.65457 3.87879 3.92830 4.10271 4.25566 4.29943 4.31800 4.53581 4.60265 4.70832 4.74742 4.87331 4.96689 5.07180 5.32885 5.40473 5.43537 5.53562 5.71147 5.96384 6.10586 6.34679 6.83886 6.88297 6.94085 7.38051 8.45043 8.66808 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.030211 B = 0.002889 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.589936 B = 9690.357080 C =10092.290072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.245 1.245 6 H -0.276 1.276 7 C -0.567 4.567 8 H 0.097 0.903 9 C 0.543 3.457 10 O -0.630 6.630 11 N -0.650 5.650 12 C 0.127 3.873 13 C 0.065 3.935 14 N -0.459 5.459 15 C 0.516 3.484 16 N -0.575 5.575 17 C 0.243 3.757 18 C -0.282 4.282 19 C 0.558 3.442 20 O -0.541 6.541 21 O -0.501 6.501 22 C 0.244 3.756 23 N -0.548 5.548 24 C 0.077 3.923 25 C 0.121 3.879 26 H 0.274 0.726 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.040 0.960 30 H 0.120 0.880 31 H 0.212 0.788 32 H 0.438 0.562 33 H 0.203 0.797 34 H 0.042 0.958 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.254 -17.971 7.655 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.168 1.168 6 H -0.201 1.201 7 C -0.603 4.603 8 H 0.115 0.885 9 C 0.349 3.651 10 O -0.517 6.517 11 N -0.387 5.387 12 C 0.003 3.997 13 C -0.061 4.061 14 N -0.177 5.177 15 C 0.162 3.838 16 N -0.295 5.295 17 C 0.075 3.925 18 C -0.290 4.290 19 C 0.402 3.598 20 O -0.433 6.433 21 O -0.315 6.315 22 C 0.075 3.925 23 N -0.266 5.266 24 C -0.051 4.051 25 C -0.003 4.003 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.058 0.942 30 H 0.138 0.862 31 H 0.229 0.771 32 H 0.302 0.698 33 H 0.220 0.780 34 H 0.060 0.940 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.231 -16.946 6.301 21.284 hybrid contribution 0.313 -0.306 1.373 1.441 sum 11.544 -17.251 7.674 22.131 Atomic orbital electron populations 1.70186 1.09585 1.28939 1.36505 1.26986 0.95468 1.04954 0.91198 0.85057 0.78986 0.75197 0.79350 1.18792 1.16785 1.20084 1.21499 0.94911 0.89578 1.54334 0.88516 1.18663 0.86575 0.83988 0.75851 1.90547 1.16576 1.87231 1.57313 1.48203 1.06472 1.05569 1.78499 1.21798 0.80211 0.99401 0.98280 1.22734 1.00595 0.84523 0.98262 1.58069 1.07691 1.06399 1.45509 1.21430 0.86346 0.91422 0.84625 1.68596 1.39898 1.11665 1.09359 1.24026 0.92896 0.87005 0.88610 1.20704 0.97096 1.04244 1.06927 1.19910 0.83416 0.79243 0.77240 1.90922 1.17576 1.67953 1.66847 1.84485 1.43497 1.50126 1.53438 1.23724 1.01756 0.83548 0.83485 1.68230 1.11957 1.21681 1.24729 1.22314 0.83436 1.01053 0.98261 1.21386 0.97132 0.83692 0.98067 0.91620 0.90922 0.88104 0.94160 0.86235 0.77135 0.69845 0.78049 0.93967 0.87361 0.91243 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.81 11.84 21.84 0.26 -49.55 16 2 C 0.03 1.59 5.50 85.31 0.47 2.06 16 3 Si 0.99 39.91 29.56 68.60 2.03 41.93 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.24 -8.98 7.11 99.48 0.71 -8.28 16 6 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.57 -31.06 8.86 24.83 0.22 -30.84 16 8 H 0.10 4.65 5.74 -2.91 -0.02 4.63 16 9 C 0.54 30.99 7.63 86.36 0.66 31.65 16 10 O -0.63 -41.77 14.49 -4.31 -0.06 -41.84 16 11 N -0.65 -29.16 3.00 -822.12 -2.47 -31.63 16 12 C 0.13 4.44 6.50 86.50 0.56 5.00 16 13 C 0.06 1.95 5.50 86.54 0.48 2.42 16 14 N -0.46 -13.84 4.67 -707.16 -3.31 -17.14 16 15 C 0.52 14.09 7.16 261.57 1.87 15.96 16 16 N -0.58 -14.22 8.61 -197.08 -1.70 -15.91 16 17 C 0.24 4.29 10.89 85.15 0.93 5.22 16 18 C -0.28 -4.84 5.90 -19.92 -0.12 -4.95 16 19 C 0.56 8.32 8.28 70.24 0.58 8.91 16 20 O -0.54 -10.99 17.22 19.78 0.34 -10.64 16 21 O -0.50 -4.05 12.77 -56.55 -0.72 -4.77 16 22 C 0.24 4.67 10.87 85.14 0.93 5.60 16 23 N -0.55 -13.49 9.59 -197.09 -1.89 -15.38 16 24 C 0.08 2.49 4.78 86.38 0.41 2.90 16 25 C 0.12 4.73 6.61 86.35 0.57 5.30 16 26 H 0.27 15.05 8.29 -92.71 -0.77 14.28 16 27 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.10 3.59 5.46 -2.39 -0.01 3.58 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.12 3.08 7.49 -2.39 -0.02 3.06 16 31 H 0.21 2.28 7.70 -2.91 -0.02 2.26 16 32 H 0.44 -0.34 9.11 -74.05 -0.67 -1.02 16 33 H 0.20 2.96 7.74 -2.91 -0.02 2.94 16 34 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 35 H 0.11 3.10 7.61 -2.39 -0.02 3.09 16 36 H 0.07 3.08 7.04 -2.39 -0.02 3.06 16 37 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -80.68 320.29 0.51 -80.17 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.47 Total: 15.54 kcal Atomic # 6 Polarization: 41.67 SS G_CDS: 7.56 Total: 49.23 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -9.10 Total: -129.62 kcal Atomic # 8 Polarization: -56.81 SS G_CDS: -0.44 Total: -57.25 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.93 kcal Total: -80.68 0.51 -80.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.188 kcal (2) G-P(sol) polarization free energy of solvation -80.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds