Wall clock time and date at job start Fri Apr 10 2020 17:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42105 * 108.57663 * 2 1 4 4 O 1.42104 * 108.57783 * 228.97503 * 2 1 3 5 5 C 1.81393 * 101.92280 * 114.48650 * 2 1 3 6 6 C 1.53002 * 109.47095 * 180.02562 * 5 2 1 7 7 N 1.46494 * 109.47141 * 180.02562 * 6 5 2 8 8 C 1.34778 * 120.00085 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00153 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00234 * 179.97438 * 8 7 6 11 11 C 1.47020 * 125.64631 * 359.69659 * 10 8 7 12 12 C 1.54333 * 107.26560 * 178.84312 * 11 10 8 13 13 C 1.55155 * 103.02328 * 338.14323 * 12 11 10 14 14 O 1.42900 * 111.00372 * 277.23364 * 13 12 11 15 15 C 1.50691 * 111.04101 * 153.39271 * 13 12 11 16 16 H 1.08006 * 120.00250 * 272.60670 * 15 13 12 17 17 C 1.37875 * 120.00310 * 92.61191 * 15 13 12 18 18 N 1.31510 * 120.00513 * 173.52245 * 17 15 13 19 19 Si 1.86802 * 119.99732 * 353.51459 * 17 15 13 20 20 H 1.48500 * 109.46714 * 87.32636 * 19 17 15 21 21 H 1.48497 * 109.47211 * 207.32256 * 19 17 15 22 22 H 1.48501 * 109.47213 * 327.33034 * 19 17 15 23 23 C 1.47419 * 125.64756 * 179.97438 * 10 8 7 24 24 H 1.08998 * 109.47293 * 305.50961 * 1 2 3 25 25 H 1.08997 * 109.47238 * 65.51128 * 1 2 3 26 26 H 1.09001 * 109.46791 * 185.51106 * 1 2 3 27 27 H 1.09001 * 109.47393 * 60.00185 * 5 2 1 28 28 H 1.08995 * 109.47315 * 299.99873 * 5 2 1 29 29 H 1.09001 * 109.46949 * 59.99791 * 6 5 2 30 30 H 1.09005 * 109.46812 * 300.00081 * 6 5 2 31 31 H 0.96998 * 120.00118 * 359.97438 * 7 6 5 32 32 H 1.09000 * 109.88227 * 298.39420 * 11 10 8 33 33 H 1.09006 * 109.88114 * 59.55800 * 11 10 8 34 34 H 1.08999 * 110.85261 * 219.67316 * 12 11 10 35 35 H 1.08999 * 110.51231 * 96.45317 * 12 11 10 36 36 H 0.96696 * 114.00153 * 168.40146 * 14 13 12 37 37 H 0.96999 * 120.00681 * 179.97438 * 18 17 15 38 38 H 1.08999 * 110.36942 * 322.93175 * 23 10 8 39 39 H 1.09005 * 110.36927 * 85.15093 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7356 1.6152 6 6 3.7055 -0.8183 1.7983 7 7 4.0082 -1.4130 3.1025 8 6 5.2894 -1.5864 3.4831 9 8 6.1942 -1.2489 2.7441 10 7 5.5679 -2.1331 4.6832 11 6 4.5760 -2.5770 5.6734 12 6 5.3544 -3.1587 6.8724 13 6 6.7306 -3.5203 6.2536 14 8 6.6822 -4.7929 5.6055 15 6 7.8176 -3.4895 7.2967 16 1 8.3320 -2.5649 7.5137 17 6 8.1559 -4.6417 7.9742 18 7 9.1869 -4.6460 8.7906 19 14 7.1495 -6.1968 7.7326 20 1 7.6792 -6.9534 6.5698 21 1 7.2383 -7.0384 8.9528 22 1 5.7311 -5.8347 7.4830 23 6 6.9176 -2.3795 5.2226 24 1 -0.3634 0.5969 0.8365 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0987 27 1 1.7611 -1.7369 1.6665 28 1 1.7611 -0.1171 2.4042 29 1 4.1328 0.1831 1.7472 30 1 4.1336 -1.4367 1.0093 31 1 3.2865 -1.6819 3.6922 32 1 3.9709 -1.7303 5.9973 33 1 3.9379 -3.3469 5.2394 34 1 4.8602 -4.0493 7.2606 35 1 5.4685 -2.4079 7.6542 36 1 7.4548 -4.9842 5.0564 37 1 9.4246 -5.4565 9.2675 38 1 7.5926 -2.6943 4.4268 39 1 7.3002 -1.4834 5.7115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649841016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:06 Heat of formation + Delta-G solvation = -134.522848 kcal Electronic energy + Delta-G solvation = -23435.934202 eV Core-core repulsion = 19699.759125 eV Total energy + Delta-G solvation = -3736.175077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01519 -37.95367 -37.41273 -36.46695 -35.42963 -34.77043 -32.40087 -31.46807 -30.23688 -29.81504 -28.33492 -25.42067 -23.61178 -22.49663 -20.13314 -19.84605 -19.22210 -18.04708 -17.44538 -17.18436 -16.74825 -16.30517 -15.81910 -15.77554 -15.07980 -15.03719 -14.76813 -14.33550 -13.79877 -13.74396 -13.63483 -13.57230 -12.80401 -12.70418 -12.50396 -12.41905 -12.40117 -12.24160 -11.96170 -11.65758 -11.59341 -11.57024 -11.20744 -11.07475 -10.53336 -10.42109 -10.24427 -9.91617 -9.26676 -9.17812 -8.70657 -8.55815 -8.07200 -6.21632 -4.33965 -0.55764 2.23443 2.74192 3.21554 3.41331 3.43448 3.49706 3.51128 3.66034 4.00987 4.15509 4.17457 4.27014 4.47047 4.50954 4.85301 4.98343 5.09708 5.11090 5.27004 5.30301 5.40819 5.50436 5.72084 5.80515 6.04794 6.37027 6.44571 6.48891 6.59324 6.67487 7.01000 7.22311 7.44316 8.09891 8.17619 8.59167 8.78252 8.79256 9.39566 10.87194 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.038400 B = 0.002795 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.985838 B =10016.562553 C =10216.655740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.433 3.567 3 O -0.932 6.932 4 O -0.932 6.932 5 C -0.634 4.634 6 C 0.153 3.847 7 N -0.745 5.745 8 C 0.718 3.282 9 O -0.593 6.593 10 N -0.627 5.627 11 C 0.100 3.900 12 C -0.120 4.120 13 C 0.220 3.780 14 O -0.559 6.559 15 C -0.552 4.552 16 H 0.082 0.918 17 C 0.074 3.926 18 N -0.887 5.887 19 Si 0.953 3.047 20 H -0.293 1.293 21 H -0.327 1.327 22 H -0.270 1.270 23 C 0.107 3.893 24 H 0.129 0.871 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.397 0.603 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.372 0.628 37 H 0.267 0.733 38 H 0.071 0.929 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.853 6.832 -12.522 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.613 3.387 3 O -0.930 6.930 4 O -0.929 6.929 5 C -0.762 4.762 6 C 0.027 3.973 7 N -0.403 5.403 8 C 0.420 3.580 9 O -0.472 6.472 10 N -0.364 5.364 11 C -0.023 4.023 12 C -0.158 4.158 13 C 0.179 3.821 14 O -0.367 6.367 15 C -0.590 4.590 16 H 0.100 0.900 17 C -0.131 4.131 18 N -0.522 5.522 19 Si 0.788 3.212 20 H -0.221 1.221 21 H -0.258 1.258 22 H -0.197 1.197 23 C -0.015 4.015 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.232 0.768 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.220 0.780 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.052 7.315 -13.360 25.181 hybrid contribution -1.026 -1.191 0.700 1.721 sum -21.078 6.123 -12.660 25.339 Atomic orbital electron populations 1.30269 1.26434 1.11719 1.11998 1.07575 0.78368 0.75772 0.77019 1.93631 1.78962 1.34236 1.86125 1.93633 1.78946 1.67056 1.53278 1.30710 1.05729 1.14882 1.24876 1.20672 0.89227 1.00513 0.86847 1.44957 1.06625 1.69023 1.19745 1.15443 0.82679 0.78779 0.81103 1.90918 1.45027 1.57632 1.53609 1.47707 1.09642 1.63705 1.15314 1.22072 0.91891 0.97675 0.90648 1.22952 0.96306 1.00937 0.95599 1.20247 0.93645 0.79065 0.89143 1.86099 1.47815 1.37430 1.65395 1.21096 1.19038 0.98131 1.20707 0.90020 1.25118 0.94296 1.00001 0.93672 1.69964 1.25452 1.29287 1.27486 0.85627 0.81092 0.80347 0.74114 1.22055 1.25832 1.19658 1.23024 0.81535 1.00129 0.96819 0.85215 0.85027 0.85208 0.84213 0.84232 0.89989 0.90004 0.76836 0.92719 0.92478 0.90153 0.89583 0.77985 0.92368 0.91090 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.27 10.62 101.05 1.07 -0.20 16 2 S 2.43 14.35 5.36 -107.50 -0.58 13.78 16 3 O -0.93 -9.42 18.10 -57.83 -1.05 -10.47 16 4 O -0.93 -9.51 18.10 -57.83 -1.05 -10.56 16 5 C -0.63 -3.14 5.92 37.16 0.22 -2.92 16 6 C 0.15 1.63 5.68 -4.04 -0.02 1.60 16 7 N -0.75 -9.34 5.52 -65.22 -0.36 -9.70 16 8 C 0.72 12.69 8.49 -86.91 -0.74 11.95 16 9 O -0.59 -12.76 16.60 5.28 0.09 -12.67 16 10 N -0.63 -11.06 3.33 -176.24 -0.59 -11.65 16 11 C 0.10 1.51 6.15 -3.06 -0.02 1.49 16 12 C -0.12 -2.21 5.90 -24.89 -0.15 -2.36 16 13 C 0.22 4.69 0.70 -89.63 -0.06 4.63 16 14 O -0.56 -11.89 8.52 -35.23 -0.30 -12.19 16 15 C -0.55 -14.27 8.89 -34.45 -0.31 -14.57 16 16 H 0.08 2.30 8.00 -52.48 -0.42 1.88 16 17 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 18 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 19 Si 0.95 22.87 24.93 -169.99 -4.24 18.63 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.33 -8.08 7.11 56.52 0.40 -7.68 16 22 H -0.27 -6.28 5.42 56.52 0.31 -5.98 16 23 C 0.11 2.15 6.07 -2.54 -0.02 2.14 16 24 H 0.13 0.03 8.14 -51.92 -0.42 -0.40 16 25 H 0.13 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.13 0.04 8.14 -51.92 -0.42 -0.39 16 27 H 0.14 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.14 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.40 3.78 7.46 -40.82 -0.30 3.48 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.52 6.65 -51.93 -0.35 1.17 16 35 H 0.09 1.56 8.03 -51.93 -0.42 1.14 16 36 H 0.37 7.16 8.98 45.56 0.41 7.57 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.07 1.47 8.02 -51.93 -0.42 1.05 16 39 H 0.07 1.45 7.99 -51.93 -0.41 1.04 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -39.28 334.62 -7.31 -46.58 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.94 Total: 4.63 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -0.11 Total: 3.70 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.17 Total: -46.48 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -2.31 Total: -45.88 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.24 Total: 18.63 kcal Atomic # 16 Polarization: 14.35 SS G_CDS: -0.58 Total: 13.78 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -39.28 -7.31 -46.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649841016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.940 kcal (2) G-P(sol) polarization free energy of solvation -39.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds