Wall clock time and date at job start Fri Apr 10 2020 17:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42105 * 108.57663 * 2 1 4 4 O 1.42104 * 108.57783 * 228.97503 * 2 1 3 5 5 C 1.81393 * 101.92280 * 114.48650 * 2 1 3 6 6 C 1.53002 * 109.47095 * 180.02562 * 5 2 1 7 7 N 1.46494 * 109.47141 * 180.02562 * 6 5 2 8 8 C 1.34778 * 120.00085 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00153 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00234 * 179.97438 * 8 7 6 11 11 C 1.47020 * 125.64631 * 359.69659 * 10 8 7 12 12 C 1.54333 * 107.26560 * 178.84312 * 11 10 8 13 13 C 1.55155 * 103.02328 * 338.14323 * 12 11 10 14 14 O 1.42900 * 111.00372 * 277.23364 * 13 12 11 15 15 C 1.50691 * 111.04101 * 153.39271 * 13 12 11 16 16 H 1.08006 * 120.00250 * 272.60670 * 15 13 12 17 17 C 1.37875 * 120.00310 * 92.61191 * 15 13 12 18 18 N 1.31510 * 120.00513 * 173.52245 * 17 15 13 19 19 Si 1.86802 * 119.99732 * 353.51459 * 17 15 13 20 20 H 1.48500 * 109.46714 * 87.32636 * 19 17 15 21 21 H 1.48497 * 109.47211 * 207.32256 * 19 17 15 22 22 H 1.48501 * 109.47213 * 327.33034 * 19 17 15 23 23 C 1.47419 * 125.64756 * 179.97438 * 10 8 7 24 24 H 1.08998 * 109.47293 * 305.50961 * 1 2 3 25 25 H 1.08997 * 109.47238 * 65.51128 * 1 2 3 26 26 H 1.09001 * 109.46791 * 185.51106 * 1 2 3 27 27 H 1.09001 * 109.47393 * 60.00185 * 5 2 1 28 28 H 1.08995 * 109.47315 * 299.99873 * 5 2 1 29 29 H 1.09001 * 109.46949 * 59.99791 * 6 5 2 30 30 H 1.09005 * 109.46812 * 300.00081 * 6 5 2 31 31 H 0.96998 * 120.00118 * 359.97438 * 7 6 5 32 32 H 1.09000 * 109.88227 * 298.39420 * 11 10 8 33 33 H 1.09006 * 109.88114 * 59.55800 * 11 10 8 34 34 H 1.08999 * 110.85261 * 219.67316 * 12 11 10 35 35 H 1.08999 * 110.51231 * 96.45317 * 12 11 10 36 36 H 0.96696 * 114.00153 * 168.40146 * 14 13 12 37 37 H 0.96999 * 120.00681 * 179.97438 * 18 17 15 38 38 H 1.08999 * 110.36942 * 322.93175 * 23 10 8 39 39 H 1.09005 * 110.36927 * 85.15093 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7356 1.6152 6 6 3.7055 -0.8183 1.7983 7 7 4.0082 -1.4130 3.1025 8 6 5.2894 -1.5864 3.4831 9 8 6.1942 -1.2489 2.7441 10 7 5.5679 -2.1331 4.6832 11 6 4.5760 -2.5770 5.6734 12 6 5.3544 -3.1587 6.8724 13 6 6.7306 -3.5203 6.2536 14 8 6.6822 -4.7929 5.6055 15 6 7.8176 -3.4895 7.2967 16 1 8.3320 -2.5649 7.5137 17 6 8.1559 -4.6417 7.9742 18 7 9.1869 -4.6460 8.7906 19 14 7.1495 -6.1968 7.7326 20 1 7.6792 -6.9534 6.5698 21 1 7.2383 -7.0384 8.9528 22 1 5.7311 -5.8347 7.4830 23 6 6.9176 -2.3795 5.2226 24 1 -0.3634 0.5969 0.8365 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0987 27 1 1.7611 -1.7369 1.6665 28 1 1.7611 -0.1171 2.4042 29 1 4.1328 0.1831 1.7472 30 1 4.1336 -1.4367 1.0093 31 1 3.2865 -1.6819 3.6922 32 1 3.9709 -1.7303 5.9973 33 1 3.9379 -3.3469 5.2394 34 1 4.8602 -4.0493 7.2606 35 1 5.4685 -2.4079 7.6542 36 1 7.4548 -4.9842 5.0564 37 1 9.4246 -5.4565 9.2675 38 1 7.5926 -2.6943 4.4268 39 1 7.3002 -1.4834 5.7115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649841016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:06 Heat of formation + Delta-G solvation = -171.050832 kcal Electronic energy + Delta-G solvation = -23437.518174 eV Core-core repulsion = 19699.759125 eV Total energy + Delta-G solvation = -3737.759049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39593 -39.46667 -38.00063 -37.06403 -36.50723 -36.33339 -34.45056 -32.58199 -31.25163 -30.28365 -29.87955 -27.13767 -24.69863 -23.75133 -21.57451 -21.31212 -19.84787 -19.54737 -19.00305 -17.86714 -17.40490 -17.14822 -16.98151 -16.87803 -16.72564 -16.47839 -15.85999 -15.58998 -15.22496 -14.79865 -14.52830 -14.05722 -13.95872 -13.85567 -13.81080 -13.39071 -13.36111 -13.12940 -13.11822 -13.03019 -12.82581 -12.71787 -12.31149 -12.20068 -12.09088 -11.94804 -11.69282 -11.32921 -11.21868 -10.63298 -10.41927 -10.33032 -9.45949 -8.32970 -6.46994 -0.97255 1.52211 1.53796 1.55658 1.75892 1.88035 2.05101 2.46823 2.70598 2.98173 3.07393 3.13837 3.45705 3.49979 3.83310 3.84523 4.07630 4.17313 4.28235 4.30561 4.32075 4.43177 4.57712 4.61337 4.74624 4.83223 4.96622 5.04971 5.15864 5.22990 5.32101 5.38914 5.54602 6.05085 6.06386 6.59084 6.88549 6.96644 7.30864 7.46996 8.80077 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.038400 B = 0.002795 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.985838 B =10016.562553 C =10216.655740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.625 4.625 2 S 2.428 3.572 3 O -0.987 6.987 4 O -0.988 6.988 5 C -0.617 4.617 6 C 0.138 3.862 7 N -0.722 5.722 8 C 0.711 3.289 9 O -0.641 6.641 10 N -0.629 5.629 11 C 0.106 3.894 12 C -0.118 4.118 13 C 0.217 3.783 14 O -0.558 6.558 15 C -0.548 4.548 16 H 0.043 0.957 17 C 0.023 3.977 18 N -0.938 5.938 19 Si 1.013 2.987 20 H -0.289 1.289 21 H -0.338 1.338 22 H -0.251 1.251 23 C 0.115 3.885 24 H 0.158 0.842 25 H 0.137 0.863 26 H 0.158 0.842 27 H 0.175 0.825 28 H 0.177 0.823 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.417 0.583 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.379 0.621 37 H 0.267 0.733 38 H 0.056 0.944 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.624 6.253 -12.825 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.614 3.386 3 O -0.985 6.985 4 O -0.985 6.985 5 C -0.746 4.746 6 C 0.013 3.987 7 N -0.381 5.381 8 C 0.413 3.587 9 O -0.523 6.523 10 N -0.365 5.365 11 C -0.016 4.016 12 C -0.156 4.156 13 C 0.176 3.824 14 O -0.367 6.367 15 C -0.586 4.586 16 H 0.061 0.939 17 C -0.176 4.176 18 N -0.576 5.576 19 Si 0.846 3.154 20 H -0.216 1.216 21 H -0.271 1.271 22 H -0.176 1.176 23 C -0.009 4.009 24 H 0.177 0.823 25 H 0.156 0.844 26 H 0.176 0.824 27 H 0.193 0.807 28 H 0.194 0.806 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.255 0.745 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.856 6.753 -13.690 29.170 hybrid contribution 0.441 -0.927 0.793 1.297 sum -24.415 5.827 -12.897 28.221 Atomic orbital electron populations 1.30021 1.19825 1.14357 1.13734 1.07301 0.80631 0.73951 0.76667 1.93565 1.81460 1.36587 1.86849 1.93566 1.81463 1.67761 1.55726 1.30588 1.01489 1.17703 1.24801 1.20824 0.93421 0.99137 0.85356 1.44760 1.05140 1.67708 1.20443 1.15686 0.83852 0.78568 0.80599 1.90888 1.47002 1.59504 1.54944 1.47607 1.09004 1.63968 1.15941 1.22205 0.91066 0.99810 0.88511 1.22857 0.94463 1.01319 0.96969 1.20136 0.94234 0.79645 0.88410 1.86056 1.48220 1.37114 1.65320 1.21340 1.19595 0.96409 1.21273 0.93873 1.25904 0.95097 1.03124 0.93525 1.70090 1.27711 1.30185 1.29604 0.84641 0.80629 0.76624 0.73465 1.21600 1.27076 1.17583 1.22651 0.83135 0.99057 0.96038 0.82323 0.84414 0.82390 0.80721 0.80565 0.91566 0.91763 0.74521 0.88797 0.89898 0.89847 0.89678 0.77175 0.92428 0.92518 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 0.55 10.62 113.37 1.20 1.76 16 2 S 2.43 24.66 5.36 -56.49 -0.30 24.36 16 3 O -0.99 -19.88 18.10 -127.37 -2.31 -22.19 16 4 O -0.99 -20.10 18.10 -127.37 -2.31 -22.41 16 5 C -0.62 -3.74 5.92 71.98 0.43 -3.32 16 6 C 0.14 2.72 5.68 86.38 0.49 3.21 16 7 N -0.72 -15.95 5.52 -478.53 -2.64 -18.59 16 8 C 0.71 24.11 8.49 179.05 1.52 25.63 16 9 O -0.64 -27.93 16.60 -4.01 -0.07 -28.00 16 10 N -0.63 -20.88 3.33 -829.75 -2.76 -23.64 16 11 C 0.11 2.73 6.15 86.73 0.53 3.27 16 12 C -0.12 -4.02 5.90 31.79 0.19 -3.83 16 13 C 0.22 9.05 0.70 -10.16 -0.01 9.04 16 14 O -0.56 -22.59 8.52 -148.98 -1.27 -23.86 16 15 C -0.55 -28.88 8.89 25.60 0.23 -28.66 16 16 H 0.04 2.55 8.00 -2.91 -0.02 2.53 16 17 C 0.02 1.28 5.46 84.65 0.46 1.74 16 18 N -0.94 -56.45 13.96 21.45 0.30 -56.15 16 19 Si 1.01 46.63 24.93 68.60 1.71 48.34 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.34 -16.14 7.11 99.48 0.71 -15.43 16 22 H -0.25 -10.64 5.42 99.48 0.54 -10.10 16 23 C 0.12 4.61 6.07 86.85 0.53 5.14 16 24 H 0.16 -0.91 8.14 -2.39 -0.02 -0.93 16 25 H 0.14 -0.09 8.14 -2.39 -0.02 -0.10 16 26 H 0.16 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.17 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.18 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.42 5.80 7.46 -92.71 -0.69 5.11 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.08 2.82 6.65 -2.39 -0.02 2.80 16 35 H 0.08 2.90 8.03 -2.39 -0.02 2.88 16 36 H 0.38 14.13 8.98 -74.06 -0.67 13.46 16 37 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.06 2.40 8.02 -2.39 -0.02 2.38 16 39 H 0.06 2.43 7.99 -2.38 -0.02 2.41 16 Total: -1.00 -91.23 334.62 -4.51 -95.74 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -0.45 Total: 12.41 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 5.57 Total: 13.99 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -5.10 Total: -98.38 kcal Atomic # 8 Polarization: -90.51 SS G_CDS: -5.95 Total: -96.45 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.71 Total: 48.34 kcal Atomic # 16 Polarization: 24.66 SS G_CDS: -0.30 Total: 24.36 kcal Total: -91.23 -4.51 -95.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649841016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.311 kcal (2) G-P(sol) polarization free energy of solvation -91.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds