Wall clock time and date at job start Fri Apr 10 2020 17:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42095 * 108.57807 * 2 1 4 4 O 1.42094 * 108.57979 * 228.96968 * 2 1 3 5 5 C 1.81403 * 101.91799 * 114.48514 * 2 1 3 6 6 C 1.52998 * 109.46945 * 179.97438 * 5 2 1 7 7 C 1.50700 * 109.47009 * 180.02562 * 6 5 2 8 8 O 1.21280 * 120.00210 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00044 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99862 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46928 * 179.97438 * 10 9 7 12 12 O 1.42899 * 113.41348 * 313.20372 * 11 10 9 13 13 C 1.53496 * 114.20479 * 180.02562 * 11 10 9 14 14 N 1.47066 * 87.98324 * 220.34620 * 13 11 10 15 15 C 1.36944 * 136.05683 * 207.08528 * 14 13 11 16 16 H 1.08004 * 119.99874 * 6.90177 * 15 14 13 17 17 C 1.38808 * 119.99887 * 186.89762 * 15 14 13 18 18 N 1.31620 * 119.99758 * 172.36849 * 17 15 14 19 19 Si 1.86803 * 120.00116 * 352.64805 * 17 15 14 20 20 H 1.48502 * 109.46980 * 175.03997 * 19 17 15 21 21 H 1.48501 * 109.46832 * 295.03703 * 19 17 15 22 22 H 1.48495 * 109.47214 * 55.03946 * 19 17 15 23 23 C 1.47058 * 87.88471 * 27.34220 * 14 13 11 24 24 H 1.08998 * 109.47358 * 305.51625 * 1 2 3 25 25 H 1.09009 * 109.46641 * 65.51649 * 1 2 3 26 26 H 1.08997 * 109.46805 * 185.51068 * 1 2 3 27 27 H 1.09001 * 109.47263 * 59.99908 * 5 2 1 28 28 H 1.08998 * 109.47413 * 300.00112 * 5 2 1 29 29 H 1.09004 * 109.47016 * 60.00403 * 6 5 2 30 30 H 1.08998 * 109.47177 * 300.00282 * 6 5 2 31 31 H 0.96997 * 119.99638 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47149 * 60.00719 * 10 9 7 33 33 H 1.08998 * 109.47686 * 300.00064 * 10 9 7 34 34 H 0.96703 * 113.99848 * 46.79570 * 12 11 10 35 35 H 1.09007 * 113.46615 * 105.56627 * 13 11 10 36 36 H 1.08998 * 113.52551 * 335.13818 * 13 11 10 37 37 H 0.96999 * 119.99710 * 5.38439 * 18 17 15 38 38 H 1.09001 * 113.46851 * 87.44175 * 23 14 13 39 39 H 1.09001 * 113.47037 * 217.87480 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0160 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8196 1.7980 7 6 4.0166 -1.4313 3.1397 8 8 3.1142 -1.7666 3.8773 9 7 5.2979 -1.6047 3.5203 10 6 5.6004 -2.1988 4.8248 11 6 7.1172 -2.2829 5.0075 12 8 7.7976 -2.8153 3.8692 13 6 7.5570 -2.8931 6.3455 14 7 8.6158 -1.8740 6.4028 15 6 9.8580 -1.7735 6.9705 16 1 10.3045 -2.6330 7.4483 17 6 10.5433 -0.5670 6.9316 18 7 11.6661 -0.4260 7.6037 19 14 9.8679 0.8590 5.9317 20 1 10.7132 2.0604 6.1494 21 1 9.8776 0.5014 4.4905 22 1 8.4760 1.1489 6.3605 23 6 7.7509 -1.0079 5.5877 24 1 -0.3634 0.5970 0.8364 25 1 -0.3633 0.4259 -0.9354 26 1 -0.3633 -1.0229 0.0987 27 1 1.7610 -1.7369 1.6666 28 1 1.7610 -0.1171 2.4043 29 1 4.1335 0.1816 1.7467 30 1 4.1327 -1.4384 1.0090 31 1 6.0196 -1.3362 2.9305 32 1 5.1727 -3.2001 4.8760 33 1 5.1727 -1.5803 5.6138 34 1 7.5181 -2.4292 3.0278 35 1 7.9381 -3.9103 6.2543 36 1 6.8132 -2.7911 7.1356 37 1 12.0556 -1.1869 8.0623 38 1 7.0576 -0.4082 6.1774 39 1 8.2970 -0.4188 4.8509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699914349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:23 Heat of formation + Delta-G solvation = -82.292798 kcal Electronic energy + Delta-G solvation = -23113.930305 eV Core-core repulsion = 19380.020093 eV Total energy + Delta-G solvation = -3733.910212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.29162 -39.14187 -37.43060 -36.48859 -35.40454 -34.28513 -33.63101 -32.30351 -30.16449 -29.17368 -26.64882 -25.58904 -24.66221 -21.52237 -20.81489 -19.69266 -19.34086 -18.26903 -17.57644 -16.95429 -16.84253 -16.60735 -16.15098 -15.98847 -15.79832 -15.02063 -14.55255 -14.37392 -13.96149 -13.78320 -13.71125 -13.58939 -13.28008 -13.10210 -13.00380 -12.73350 -12.53224 -12.43642 -12.17832 -11.92530 -11.67375 -11.56180 -11.13937 -11.05473 -10.58828 -10.42685 -10.14109 -10.07091 -9.38406 -9.24006 -8.99052 -8.89744 -7.19757 -6.34484 -3.25177 -0.52980 2.22779 2.33100 2.77594 3.20932 3.34578 3.39430 3.53151 3.60881 3.93093 4.16886 4.20737 4.28079 4.40052 4.48780 4.55209 4.56099 4.71560 4.90354 4.97193 5.01567 5.13476 5.28154 5.42797 5.48185 5.73456 5.96163 6.05856 6.08374 6.20931 6.28673 6.47087 7.03436 7.14749 7.77048 7.91871 8.21215 8.94860 9.46411 10.30127 11.18363 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.002860 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.350713 B = 9788.306416 C =10342.755107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.423 3.577 3 O -0.937 6.937 4 O -0.938 6.938 5 C -0.596 4.596 6 C -0.136 4.136 7 C 0.523 3.477 8 O -0.537 6.537 9 N -0.726 5.726 10 C 0.105 3.895 11 C 0.070 3.930 12 O -0.518 6.518 13 C 0.140 3.860 14 N -0.618 5.618 15 C -0.301 4.301 16 H 0.084 0.916 17 C -0.026 4.026 18 N -0.934 5.934 19 Si 1.073 2.927 20 H -0.294 1.294 21 H -0.294 1.294 22 H -0.288 1.288 23 C 0.077 3.923 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.400 0.600 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.363 0.637 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.261 0.739 38 H 0.054 0.946 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.305 -0.290 -15.846 29.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.605 3.395 3 O -0.934 6.934 4 O -0.936 6.936 5 C -0.725 4.725 6 C -0.177 4.177 7 C 0.308 3.692 8 O -0.413 6.413 9 N -0.380 5.380 10 C -0.020 4.020 11 C 0.027 3.973 12 O -0.321 6.321 13 C 0.012 3.988 14 N -0.345 5.345 15 C -0.427 4.427 16 H 0.102 0.898 17 C -0.225 4.225 18 N -0.576 5.576 19 Si 0.906 3.094 20 H -0.222 1.222 21 H -0.222 1.222 22 H -0.215 1.215 23 C -0.050 4.050 24 H 0.148 0.852 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.235 0.765 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.209 0.791 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.537 1.006 -15.736 28.331 hybrid contribution -0.807 -1.464 0.407 1.720 sum -24.344 -0.458 -15.329 28.772 Atomic orbital electron populations 1.30245 1.26522 1.11758 1.11901 1.07779 0.78476 0.75791 0.77446 1.93621 1.79027 1.34386 1.86399 1.93614 1.79066 1.67025 1.53854 1.30153 1.03776 1.15250 1.23289 1.21373 0.93712 1.04790 0.97857 1.20202 0.82606 0.78471 0.87952 1.90711 1.45464 1.50450 1.54720 1.45955 1.07604 1.64025 1.20399 1.21993 0.95835 0.99400 0.84727 1.23330 0.87227 0.97911 0.88876 1.86696 1.65015 1.65195 1.15235 1.22332 0.90911 0.95416 0.90103 1.45700 1.13026 1.13855 1.61918 1.20118 0.89692 0.99208 1.33670 0.89818 1.25743 0.97475 0.99049 1.00191 1.70918 1.21219 1.32123 1.33350 0.83653 0.74634 0.75934 0.75155 1.22156 1.22224 1.21526 1.23504 0.93391 0.93915 0.94141 0.85181 0.85173 0.85213 0.84170 0.84121 0.86845 0.86911 0.76515 0.90351 0.89782 0.79100 0.92454 0.92667 0.92874 0.92843 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.42 10.62 101.05 1.07 -0.34 16 2 S 2.42 12.49 5.36 -107.50 -0.58 11.91 16 3 O -0.94 -8.52 18.10 -57.83 -1.05 -9.56 16 4 O -0.94 -8.33 18.10 -57.83 -1.05 -9.38 16 5 C -0.60 -3.02 5.09 37.16 0.19 -2.83 16 6 C -0.14 -0.92 5.71 -27.88 -0.16 -1.08 16 7 C 0.52 5.43 7.83 -10.98 -0.09 5.34 16 8 O -0.54 -7.37 15.98 5.56 0.09 -7.28 16 9 N -0.73 -7.41 5.34 -60.29 -0.32 -7.73 16 10 C 0.11 1.34 5.43 -4.04 -0.02 1.32 16 11 C 0.07 1.13 1.74 -89.97 -0.16 0.98 16 12 O -0.52 -8.40 13.56 -35.23 -0.48 -8.87 16 13 C 0.14 2.70 8.10 -8.52 -0.07 2.63 16 14 N -0.62 -15.19 3.69 -184.62 -0.68 -15.87 16 15 C -0.30 -8.78 11.08 -15.06 -0.17 -8.94 16 16 H 0.08 2.57 8.05 -52.48 -0.42 2.15 16 17 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 18 N -0.93 -29.69 13.70 55.49 0.76 -28.93 16 19 Si 1.07 26.72 25.13 -169.99 -4.27 22.44 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 H -0.29 -6.88 6.64 56.52 0.38 -6.51 16 22 H -0.29 -6.60 6.13 56.52 0.35 -6.25 16 23 C 0.08 1.55 5.14 -8.39 -0.04 1.50 16 24 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 25 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 26 H 0.13 0.09 8.14 -51.93 -0.42 -0.34 16 27 H 0.14 0.57 8.10 -51.92 -0.42 0.15 16 28 H 0.14 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.40 3.10 6.95 -40.82 -0.28 2.82 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.11 7.89 -51.93 -0.41 0.70 16 34 H 0.36 3.99 7.21 45.56 0.33 4.32 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 37 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 38 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 39 H 0.06 1.16 4.67 -51.93 -0.24 0.92 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -42.41 337.37 -6.90 -49.31 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.87 Total: 1.18 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 0.46 Total: -2.30 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.24 Total: -52.53 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -2.48 Total: -35.09 kcal Atomic # 14 Polarization: 26.72 SS G_CDS: -4.27 Total: 22.44 kcal Atomic # 16 Polarization: 12.49 SS G_CDS: -0.58 Total: 11.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -42.41 -6.90 -49.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699914349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.986 kcal (2) G-P(sol) polarization free energy of solvation -42.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds