Wall clock time and date at job start Fri Apr 10 2020 17:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42095 * 108.57807 * 2 1 4 4 O 1.42094 * 108.57979 * 228.96968 * 2 1 3 5 5 C 1.81403 * 101.91799 * 114.48514 * 2 1 3 6 6 C 1.52998 * 109.46945 * 179.97438 * 5 2 1 7 7 C 1.50700 * 109.47009 * 180.02562 * 6 5 2 8 8 O 1.21280 * 120.00210 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00044 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99862 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46928 * 179.97438 * 10 9 7 12 12 O 1.42899 * 113.41348 * 313.20372 * 11 10 9 13 13 C 1.53496 * 114.20479 * 180.02562 * 11 10 9 14 14 N 1.47066 * 87.98324 * 220.34620 * 13 11 10 15 15 C 1.36944 * 136.05683 * 207.08528 * 14 13 11 16 16 H 1.08004 * 119.99874 * 6.90177 * 15 14 13 17 17 C 1.38808 * 119.99887 * 186.89762 * 15 14 13 18 18 N 1.31620 * 119.99758 * 172.36849 * 17 15 14 19 19 Si 1.86803 * 120.00116 * 352.64805 * 17 15 14 20 20 H 1.48502 * 109.46980 * 175.03997 * 19 17 15 21 21 H 1.48501 * 109.46832 * 295.03703 * 19 17 15 22 22 H 1.48495 * 109.47214 * 55.03946 * 19 17 15 23 23 C 1.47058 * 87.88471 * 27.34220 * 14 13 11 24 24 H 1.08998 * 109.47358 * 305.51625 * 1 2 3 25 25 H 1.09009 * 109.46641 * 65.51649 * 1 2 3 26 26 H 1.08997 * 109.46805 * 185.51068 * 1 2 3 27 27 H 1.09001 * 109.47263 * 59.99908 * 5 2 1 28 28 H 1.08998 * 109.47413 * 300.00112 * 5 2 1 29 29 H 1.09004 * 109.47016 * 60.00403 * 6 5 2 30 30 H 1.08998 * 109.47177 * 300.00282 * 6 5 2 31 31 H 0.96997 * 119.99638 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47149 * 60.00719 * 10 9 7 33 33 H 1.08998 * 109.47686 * 300.00064 * 10 9 7 34 34 H 0.96703 * 113.99848 * 46.79570 * 12 11 10 35 35 H 1.09007 * 113.46615 * 105.56627 * 13 11 10 36 36 H 1.08998 * 113.52551 * 335.13818 * 13 11 10 37 37 H 0.96999 * 119.99710 * 5.38439 * 18 17 15 38 38 H 1.09001 * 113.46851 * 87.44175 * 23 14 13 39 39 H 1.09001 * 113.47037 * 217.87480 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0160 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8196 1.7980 7 6 4.0166 -1.4313 3.1397 8 8 3.1142 -1.7666 3.8773 9 7 5.2979 -1.6047 3.5203 10 6 5.6004 -2.1988 4.8248 11 6 7.1172 -2.2829 5.0075 12 8 7.7976 -2.8153 3.8692 13 6 7.5570 -2.8931 6.3455 14 7 8.6158 -1.8740 6.4028 15 6 9.8580 -1.7735 6.9705 16 1 10.3045 -2.6330 7.4483 17 6 10.5433 -0.5670 6.9316 18 7 11.6661 -0.4260 7.6037 19 14 9.8679 0.8590 5.9317 20 1 10.7132 2.0604 6.1494 21 1 9.8776 0.5014 4.4905 22 1 8.4760 1.1489 6.3605 23 6 7.7509 -1.0079 5.5877 24 1 -0.3634 0.5970 0.8364 25 1 -0.3633 0.4259 -0.9354 26 1 -0.3633 -1.0229 0.0987 27 1 1.7610 -1.7369 1.6666 28 1 1.7610 -0.1171 2.4043 29 1 4.1335 0.1816 1.7467 30 1 4.1327 -1.4384 1.0090 31 1 6.0196 -1.3362 2.9305 32 1 5.1727 -3.2001 4.8760 33 1 5.1727 -1.5803 5.6138 34 1 7.5181 -2.4292 3.0278 35 1 7.9381 -3.9103 6.2543 36 1 6.8132 -2.7911 7.1356 37 1 12.0556 -1.1869 8.0623 38 1 7.0576 -0.4082 6.1774 39 1 8.2970 -0.4188 4.8509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699914349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:22 Heat of formation + Delta-G solvation = -122.331490 kcal Electronic energy + Delta-G solvation = -23115.666513 eV Core-core repulsion = 19380.020093 eV Total energy + Delta-G solvation = -3735.646420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39809 -40.33202 -37.95125 -37.01138 -36.80871 -35.31078 -34.45636 -34.13364 -30.71525 -30.30044 -28.02287 -27.17757 -25.52676 -23.19282 -21.63997 -21.20696 -19.77009 -19.73812 -18.91229 -17.99871 -17.42709 -17.28442 -17.15656 -16.68091 -16.53977 -16.32242 -15.84062 -15.70123 -15.22938 -15.10256 -14.75722 -14.30994 -14.08430 -13.94795 -13.86627 -13.56304 -13.42739 -13.26093 -13.07584 -12.98268 -12.85305 -12.39523 -12.39162 -11.99928 -11.91323 -11.78676 -11.55939 -11.34862 -11.04176 -10.94717 -10.63917 -10.17890 -9.23221 -8.68691 -5.49526 -0.89446 1.34709 1.47051 1.56625 1.66605 1.90652 2.01625 2.53194 2.79772 2.86814 2.95040 3.16719 3.18412 3.29793 3.46459 3.75226 3.86133 3.90746 4.16814 4.25482 4.29871 4.45560 4.48636 4.55960 4.61431 4.64574 4.74319 4.78531 4.92712 5.01433 5.04716 5.14723 5.27552 5.91552 6.39333 6.66567 6.74742 7.14063 7.28995 8.21883 8.87106 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.002860 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.350713 B = 9788.306416 C =10342.755107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.438 3.562 3 O -0.982 6.982 4 O -0.981 6.981 5 C -0.594 4.594 6 C -0.144 4.144 7 C 0.524 3.476 8 O -0.571 6.571 9 N -0.722 5.722 10 C 0.120 3.880 11 C 0.105 3.895 12 O -0.537 6.537 13 C 0.128 3.872 14 N -0.655 5.655 15 C -0.290 4.290 16 H 0.046 0.954 17 C -0.090 4.090 18 N -0.971 5.971 19 Si 1.113 2.887 20 H -0.306 1.306 21 H -0.270 1.270 22 H -0.255 1.255 23 C 0.067 3.933 24 H 0.150 0.850 25 H 0.137 0.863 26 H 0.151 0.849 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.413 0.587 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.387 0.613 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.245 0.755 38 H 0.070 0.930 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.780 0.230 -17.731 32.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.625 3.375 3 O -0.979 6.979 4 O -0.979 6.979 5 C -0.723 4.723 6 C -0.185 4.185 7 C 0.310 3.690 8 O -0.450 6.450 9 N -0.377 5.377 10 C -0.006 4.006 11 C 0.062 3.938 12 O -0.344 6.344 13 C 0.003 3.997 14 N -0.384 5.384 15 C -0.417 4.417 16 H 0.064 0.936 17 C -0.281 4.281 18 N -0.616 5.616 19 Si 0.938 3.062 20 H -0.234 1.234 21 H -0.197 1.197 22 H -0.180 1.180 23 C -0.058 4.058 24 H 0.168 0.832 25 H 0.156 0.844 26 H 0.169 0.831 27 H 0.170 0.830 28 H 0.169 0.831 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.250 0.750 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.237 0.763 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.030 1.497 -17.680 32.333 hybrid contribution 0.184 -1.784 1.019 2.063 sum -26.845 -0.287 -16.660 31.596 Atomic orbital electron populations 1.30105 1.22074 1.13810 1.13318 1.07077 0.79779 0.74040 0.76632 1.93562 1.80994 1.36429 1.86946 1.93558 1.80991 1.67647 1.55660 1.30139 1.02958 1.16176 1.23034 1.21543 0.95163 1.05686 0.96081 1.20738 0.81897 0.77625 0.88703 1.90700 1.46370 1.51966 1.56001 1.45876 1.08347 1.63800 1.19628 1.21667 0.92499 1.00172 0.86229 1.22737 0.89127 0.94297 0.87674 1.86651 1.65737 1.65530 1.16479 1.22641 0.89992 0.94102 0.93005 1.45786 1.12895 1.17025 1.62666 1.19963 0.91865 0.97832 1.32065 0.93558 1.27209 0.97361 1.02294 1.01197 1.71031 1.23072 1.31698 1.35842 0.83227 0.75517 0.72363 0.75054 1.23404 1.19706 1.18010 1.23786 0.92885 0.95302 0.93788 0.83154 0.84410 0.83071 0.82971 0.83121 0.85379 0.85076 0.74985 0.89714 0.89660 0.76305 0.93368 0.90125 0.94604 0.91261 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.56 10.62 113.37 1.20 0.64 16 2 S 2.44 20.27 5.36 -56.49 -0.30 19.97 16 3 O -0.98 -16.59 18.10 -127.37 -2.30 -18.89 16 4 O -0.98 -16.13 18.10 -127.37 -2.30 -18.44 16 5 C -0.59 -4.30 5.09 71.98 0.37 -3.93 16 6 C -0.14 -1.50 5.71 29.85 0.17 -1.33 16 7 C 0.52 9.16 7.83 87.66 0.69 9.85 16 8 O -0.57 -14.03 15.98 -3.03 -0.05 -14.07 16 9 N -0.72 -12.07 5.34 -463.06 -2.47 -14.55 16 10 C 0.12 2.63 5.43 86.38 0.47 3.10 16 11 C 0.10 3.10 1.74 -10.37 -0.02 3.08 16 12 O -0.54 -15.87 13.56 -148.98 -2.02 -17.89 16 13 C 0.13 4.77 8.10 83.17 0.67 5.45 16 14 N -0.66 -31.73 3.69 -738.49 -2.73 -34.46 16 15 C -0.29 -17.31 11.08 84.03 0.93 -16.38 16 16 H 0.05 3.01 8.05 -2.91 -0.02 2.99 16 17 C -0.09 -5.46 5.50 84.86 0.47 -4.99 16 18 N -0.97 -64.01 13.70 21.65 0.30 -63.71 16 19 Si 1.11 53.20 25.13 68.60 1.72 54.92 16 20 H -0.31 -15.08 7.11 99.48 0.71 -14.38 16 21 H -0.27 -11.74 6.64 99.48 0.66 -11.08 16 22 H -0.26 -10.69 6.13 99.48 0.61 -10.08 16 23 C 0.07 2.52 5.14 83.26 0.43 2.95 16 24 H 0.15 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.15 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.15 0.75 8.10 -2.39 -0.02 0.73 16 28 H 0.15 0.81 8.10 -2.39 -0.02 0.79 16 29 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.41 4.76 6.95 -92.71 -0.64 4.11 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 1.93 7.89 -2.39 -0.02 1.92 16 34 H 0.39 7.10 7.21 -74.06 -0.53 6.56 16 35 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 37 H 0.24 16.26 8.73 -92.71 -0.81 15.45 16 38 H 0.07 2.42 7.50 -2.39 -0.02 2.41 16 39 H 0.05 2.05 4.67 -2.39 -0.01 2.04 16 Total: -1.00 -94.90 337.37 -5.06 -99.97 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -0.28 Total: 8.72 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 5.38 Total: -1.56 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -4.91 Total: -112.72 kcal Atomic # 8 Polarization: -62.62 SS G_CDS: -6.68 Total: -69.30 kcal Atomic # 14 Polarization: 53.20 SS G_CDS: 1.72 Total: 54.92 kcal Atomic # 16 Polarization: 20.27 SS G_CDS: -0.30 Total: 19.97 kcal Total: -94.90 -5.06 -99.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699914349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.366 kcal (2) G-P(sol) polarization free energy of solvation -94.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds