Wall clock time and date at job start Fri Apr 10 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47281 * 2 1 4 4 C 1.50696 * 109.47378 * 239.99833 * 2 1 3 5 5 O 1.21292 * 120.00047 * 265.00331 * 4 2 1 6 6 N 1.34771 * 120.00690 * 85.00213 * 4 2 1 7 7 C 1.46496 * 120.00856 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47517 * 179.97438 * 7 6 4 9 9 O 1.42900 * 112.93887 * 53.41035 * 8 7 6 10 10 C 1.53940 * 113.74308 * 281.67843 * 8 7 6 11 11 N 1.47577 * 86.11847 * 222.04477 * 10 8 7 12 12 C 1.36933 * 134.49959 * 204.63872 * 11 10 8 13 13 H 1.07995 * 120.00503 * 173.48342 * 12 11 10 14 14 C 1.38812 * 119.99464 * 353.48399 * 12 11 10 15 15 N 1.31622 * 120.00268 * 5.06539 * 14 12 11 16 16 Si 1.86802 * 119.99833 * 185.06434 * 14 12 11 17 17 H 1.48497 * 109.47331 * 94.98661 * 16 14 12 18 18 H 1.48502 * 109.46923 * 214.98731 * 16 14 12 19 19 H 1.48501 * 109.47248 * 334.98472 * 16 14 12 20 20 C 1.47586 * 91.01354 * 24.64222 * 11 10 8 21 21 S 1.81401 * 109.47152 * 119.99619 * 2 1 3 22 22 C 1.81405 * 101.92146 * 305.00265 * 21 2 1 23 23 O 1.42099 * 108.57679 * 59.48588 * 21 2 1 24 24 O 1.42095 * 108.58022 * 190.51313 * 21 2 1 25 25 H 1.08994 * 109.47250 * 300.00300 * 1 2 3 26 26 H 1.09001 * 109.46825 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46710 * 60.00343 * 1 2 3 28 28 H 0.97005 * 119.99649 * 359.97438 * 6 4 2 29 29 H 1.08995 * 109.47298 * 299.99993 * 7 6 4 30 30 H 1.09009 * 109.46868 * 59.99872 * 7 6 4 31 31 H 0.96696 * 114.00283 * 309.66255 * 9 8 7 32 32 H 1.09009 * 113.77039 * 336.34859 * 10 8 7 33 33 H 1.09005 * 113.77355 * 107.74275 * 10 8 7 34 34 H 0.96999 * 119.99890 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.77271 * 221.06236 * 20 11 10 36 36 H 1.09002 * 113.77104 * 89.65807 * 20 11 10 37 37 H 1.09003 * 109.47082 * 59.99623 * 22 21 2 38 38 H 1.08994 * 109.46921 * 179.97438 * 22 21 2 39 39 H 1.08997 * 109.46947 * 299.99932 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3208 -1.8873 -1.1759 6 7 2.1612 -0.0382 -2.3914 7 6 2.6501 -0.7287 -3.5874 8 6 2.7010 0.2542 -4.7588 9 8 3.4432 1.4383 -4.4606 10 6 1.3282 0.5255 -5.4004 11 7 2.0289 0.4400 -6.6963 12 6 1.7927 0.9381 -7.9498 13 1 2.5311 0.8142 -8.7281 14 6 0.6042 1.6023 -8.2200 15 7 -0.2517 1.8412 -7.2490 16 14 0.2195 2.1572 -9.9617 17 1 -0.6137 1.1295 -10.6361 18 1 -0.5202 3.4442 -9.9192 19 1 1.4865 2.3392 -10.7145 20 6 3.0867 -0.3981 -6.0989 21 16 2.1347 -0.8550 1.4812 22 6 1.2997 0.0578 2.8079 23 8 1.6408 -2.1874 1.4681 24 8 3.5341 -0.6349 1.5914 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.9302 0.9029 -2.4351 29 1 3.6494 -1.1205 -3.3978 30 1 1.9779 -1.5511 -3.8324 31 1 3.1837 1.8675 -3.6338 32 1 0.6028 -0.2722 -5.2396 33 1 0.9287 1.5158 -5.1813 34 1 -1.0824 2.3050 -7.4380 35 1 4.0914 -0.1452 -6.4374 36 1 2.8779 -1.4670 -6.1433 37 1 0.2201 -0.0208 2.6794 38 1 1.5821 -0.3639 3.7725 39 1 1.5948 1.1064 2.7690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699915529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:26 Heat of formation + Delta-G solvation = -86.198318 kcal Electronic energy + Delta-G solvation = -23740.382154 eV Core-core repulsion = 20006.302586 eV Total energy + Delta-G solvation = -3734.079568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.19970 -38.77423 -37.23797 -36.22041 -35.04211 -34.29531 -33.76032 -32.02980 -29.90300 -28.63168 -26.33497 -25.14104 -24.80669 -22.07357 -20.96407 -19.47240 -19.07792 -18.17165 -17.43398 -16.80111 -16.42510 -16.10637 -15.96640 -15.54084 -15.36589 -14.75152 -14.29869 -14.03031 -13.82102 -13.67780 -13.62710 -13.50731 -13.21791 -12.76272 -12.63306 -12.42212 -12.32022 -12.25024 -12.17833 -11.83157 -11.33494 -11.13584 -11.00567 -10.89976 -10.80615 -10.52339 -10.24947 -9.84911 -9.58371 -9.36983 -9.08290 -8.86791 -6.94749 -5.84493 -3.15067 -0.42793 2.25453 2.39233 2.74713 3.36338 3.41684 3.43380 3.50695 3.66104 4.11708 4.16566 4.37247 4.38781 4.44132 4.53699 4.64561 4.89267 4.96144 5.12448 5.13428 5.20442 5.24277 5.51353 5.60912 5.66542 5.93464 6.16995 6.30498 6.44498 6.50181 6.94498 7.05639 7.17271 7.44665 7.86478 7.90173 8.05005 8.98053 9.64204 10.50556 11.33563 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.032496 B = 0.003028 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.425422 B = 9244.345822 C = 9615.306626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.616 4.616 3 H 0.155 0.845 4 C 0.540 3.460 5 O -0.523 6.523 6 N -0.709 5.709 7 C 0.098 3.902 8 C 0.062 3.938 9 O -0.525 6.525 10 C 0.147 3.853 11 N -0.602 5.602 12 C -0.219 4.219 13 H 0.082 0.918 14 C -0.007 4.007 15 N -0.922 5.922 16 Si 0.913 3.087 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.280 1.280 20 C 0.136 3.864 21 S 2.448 3.552 22 C -0.662 4.662 23 O -0.909 6.909 24 O -0.931 6.931 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.402 0.598 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.361 0.639 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.253 0.747 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -0.114 20.626 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.724 4.724 3 H 0.173 0.827 4 C 0.323 3.677 5 O -0.399 6.399 6 N -0.361 5.361 7 C -0.026 4.026 8 C 0.019 3.981 9 O -0.329 6.329 10 C 0.021 3.979 11 N -0.327 5.327 12 C -0.347 4.347 13 H 0.100 0.900 14 C -0.204 4.204 15 N -0.569 5.569 16 Si 0.743 3.257 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.205 1.205 20 C 0.009 3.991 21 S 2.624 3.376 22 C -0.811 4.811 23 O -0.906 6.906 24 O -0.928 6.928 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.237 0.763 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.207 0.793 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.484 -1.632 19.830 19.952 hybrid contribution -1.355 1.745 -0.537 2.274 sum 0.129 0.113 19.292 19.293 Atomic orbital electron populations 1.21662 0.87413 1.05343 1.05385 1.30695 1.09153 1.15452 1.17133 0.82666 1.19108 0.78122 0.86760 0.83712 1.90895 1.49631 1.14706 1.84706 1.45803 1.66373 1.14301 1.09589 1.22209 1.00482 0.96448 0.83447 1.23822 0.96709 0.85313 0.92258 1.86638 1.61780 1.40202 1.44231 1.22846 0.90441 1.00687 0.83924 1.45638 1.24714 1.55885 1.06510 1.19016 1.00751 1.29293 0.85606 0.90017 1.24801 0.96440 1.01250 0.97894 1.69813 1.10839 1.46016 1.30266 0.86085 0.78075 0.77731 0.83822 1.21592 1.21702 1.20491 1.22569 0.94907 0.94308 0.87285 1.07497 0.76084 0.76639 0.77350 1.30402 1.15334 1.15827 1.19536 1.93610 1.81529 1.30559 1.84887 1.93601 1.27639 1.86411 1.85175 0.90029 0.89640 0.89296 0.76313 0.90535 0.89739 0.79326 0.94592 0.90811 0.93684 0.92551 0.93087 0.84909 0.84904 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.88 37.16 0.33 -0.50 16 2 C -0.62 -4.82 3.15 -27.88 -0.09 -4.90 16 3 H 0.16 0.57 8.14 -51.92 -0.42 0.15 16 4 C 0.54 6.95 6.95 -10.99 -0.08 6.88 16 5 O -0.52 -8.99 15.48 -9.38 -0.15 -9.13 16 6 N -0.71 -8.57 5.34 -60.29 -0.32 -8.89 16 7 C 0.10 1.45 5.28 -4.04 -0.02 1.43 16 8 C 0.06 1.09 1.52 -89.70 -0.14 0.96 16 9 O -0.53 -9.15 13.51 -35.23 -0.48 -9.63 16 10 C 0.15 3.24 6.83 -2.98 -0.02 3.22 16 11 N -0.60 -15.24 3.70 -177.81 -0.66 -15.90 16 12 C -0.22 -6.14 10.70 -15.06 -0.16 -6.31 16 13 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 15 N -0.92 -26.71 11.51 55.49 0.64 -26.07 16 16 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 C 0.14 2.76 8.34 -2.97 -0.02 2.73 16 21 S 2.45 22.46 4.52 -107.50 -0.49 21.97 16 22 C -0.66 -2.42 10.01 101.05 1.01 -1.41 16 23 O -0.91 -12.28 17.21 -64.29 -1.11 -13.39 16 24 O -0.93 -12.03 18.10 -57.83 -1.05 -13.08 16 25 H 0.08 0.18 6.39 -51.93 -0.33 -0.15 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.40 3.76 7.31 -40.82 -0.30 3.46 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.31 8.04 -51.92 -0.42 0.89 16 31 H 0.36 4.50 7.61 45.56 0.35 4.85 16 32 H 0.04 0.81 8.03 -51.92 -0.42 0.39 16 33 H 0.07 1.78 7.35 -51.93 -0.38 1.40 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.13 0.23 6.77 -51.92 -0.35 -0.12 16 38 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -40.58 340.12 -7.56 -48.14 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.78 Total: 2.11 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 0.72 Total: 1.79 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.34 Total: -50.86 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -2.77 Total: -45.22 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 22.46 SS G_CDS: -0.49 Total: 21.97 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -40.58 -7.56 -48.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699915529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.057 kcal (2) G-P(sol) polarization free energy of solvation -40.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds