Wall clock time and date at job start Fri Apr 10 2020 17:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34950 * 119.70221 * 2 1 4 4 C 1.38322 * 119.02018 * 179.97438 * 3 2 1 5 5 C 1.47311 * 120.73494 * 180.02562 * 4 3 2 6 6 O 1.21623 * 119.99764 * 255.30404 * 5 4 3 7 7 N 1.34772 * 120.00130 * 75.30668 * 5 4 3 8 8 C 1.46503 * 119.99811 * 185.25254 * 7 5 4 9 9 C 1.50693 * 109.47400 * 90.00172 * 8 7 5 10 10 H 1.08006 * 119.99701 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00033 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00307 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99637 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47104 * 90.00163 * 13 11 9 15 15 H 1.48501 * 109.46859 * 209.99561 * 13 11 9 16 16 H 1.48494 * 109.47325 * 329.99668 * 13 11 9 17 17 C 1.46505 * 120.00095 * 5.24926 * 7 5 4 18 18 C 1.53005 * 109.46629 * 94.91734 * 17 7 5 19 19 C 1.47202 * 109.46795 * 179.97438 * 18 17 7 20 20 N 6.03054 * 114.12178 * 79.44688 * 2 1 3 21 21 C 1.42090 * 118.52524 * 359.97438 * 4 3 2 22 22 O 1.35016 * 120.33399 * 180.02562 * 21 4 3 23 23 N 1.32219 * 119.33492 * 359.97438 * 21 4 3 24 24 C 1.33315 * 120.93011 * 359.74543 * 23 21 4 25 25 O 1.21912 * 119.20440 * 180.27657 * 24 23 21 26 26 H 1.09003 * 109.46504 * 90.00984 * 1 2 3 27 27 H 1.08996 * 109.47602 * 330.00459 * 1 2 3 28 28 H 1.09001 * 109.46735 * 210.00288 * 1 2 3 29 29 H 1.08001 * 120.49077 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.46808 * 210.00376 * 8 7 5 31 31 H 1.08995 * 109.47170 * 329.99416 * 8 7 5 32 32 H 0.97003 * 120.00300 * 180.02562 * 12 11 9 33 33 H 1.08995 * 109.46813 * 214.91136 * 17 7 5 34 34 H 1.08999 * 109.46908 * 334.92239 * 17 7 5 35 35 H 1.08993 * 109.47054 * 300.00040 * 18 17 7 36 36 H 1.08999 * 109.47063 * 60.00600 * 18 17 7 37 37 H 0.96699 * 114.00319 * 174.99910 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1722 0.0000 4 6 3.5168 1.1557 0.0005 5 6 4.2847 2.4129 0.0011 6 8 4.8301 2.7927 -1.0174 7 7 4.3829 3.1420 1.1303 8 6 5.0477 4.4473 1.1039 9 6 4.0351 5.5207 0.7986 10 1 2.9999 5.2570 0.6397 11 6 4.4305 6.8394 0.7211 12 7 5.6911 7.1604 0.9141 13 14 3.1753 8.1699 0.3419 14 1 2.5936 8.6776 1.6105 15 1 3.8390 9.2853 -0.3795 16 1 2.0956 7.6046 -0.5064 17 6 3.8247 2.6295 2.3841 18 6 4.9230 1.9201 3.1788 19 6 4.3624 1.4056 4.4389 20 7 3.9296 1.0080 5.4108 21 6 4.1805 -0.1007 0.0016 22 8 5.5293 -0.1593 0.0027 23 7 3.4638 -1.2118 0.0026 24 6 2.1314 -1.1678 0.0077 25 8 1.5018 -2.2117 0.0136 26 1 -0.3632 -0.0002 -1.0277 27 1 -0.3634 0.8900 0.5137 28 1 -0.3633 -0.8900 0.5139 29 1 1.5968 2.1093 -0.0004 30 1 5.5030 4.6428 2.0748 31 1 5.8196 4.4463 0.3344 32 1 5.9691 8.0881 0.8600 33 1 3.4291 3.4582 2.9712 34 1 3.0230 1.9248 2.1636 35 1 5.3188 1.0915 2.5917 36 1 5.7248 2.6248 3.3993 37 1 5.8840 -1.0556 0.0804 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771595621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:32 Heat of formation + Delta-G solvation = -27.975750 kcal Electronic energy + Delta-G solvation = -25255.469698 eV Core-core repulsion = 21420.763650 eV Total energy + Delta-G solvation = -3834.706048 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.04285 -39.51021 -38.63121 -36.94450 -36.84581 -35.33757 -34.83585 -33.01714 -31.56605 -30.93215 -28.03496 -27.29348 -25.21951 -24.22561 -24.01629 -22.65256 -19.99033 -19.52480 -18.45514 -17.76196 -17.21270 -16.89400 -16.54558 -16.28500 -15.88682 -15.49849 -14.80154 -14.75039 -14.62877 -14.39105 -14.07706 -13.94860 -13.52806 -13.51009 -13.04415 -12.91380 -12.52063 -12.47138 -12.25544 -11.96102 -11.70080 -11.37068 -11.09979 -11.06224 -10.97057 -10.72797 -10.34845 -10.30197 -10.19341 -9.83851 -9.35288 -8.70751 -8.56048 -7.99991 -6.18681 -4.24590 0.39749 1.28768 2.09373 2.65780 2.78107 2.86674 3.17259 3.20849 3.29213 3.29983 3.44199 3.56787 3.95996 4.05428 4.26272 4.33202 4.56445 4.77006 4.91053 4.92243 5.02893 5.07123 5.16994 5.21532 5.26422 5.38076 5.71543 5.75437 5.95175 6.03635 6.78542 6.90769 7.23003 7.29960 7.53442 7.53742 7.75786 7.91581 8.04156 8.06833 8.64191 8.81641 9.41380 10.89373 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.004802 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.024094 B = 5829.635903 C = 6438.283526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.520 5.520 3 C 0.232 3.768 4 C -0.282 4.282 5 C 0.578 3.422 6 O -0.512 6.512 7 N -0.586 5.586 8 C 0.244 3.756 9 C -0.534 4.534 10 H 0.058 0.942 11 C 0.065 3.935 12 N -0.890 5.890 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.119 3.881 18 C -0.049 4.049 19 C 0.215 3.785 20 N -0.443 5.443 21 C 0.485 3.515 22 O -0.431 6.431 23 N -0.613 5.613 24 C 0.654 3.346 25 O -0.535 6.535 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.192 0.808 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.265 0.735 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 -10.277 0.529 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.234 5.234 3 C 0.093 3.907 4 C -0.294 4.294 5 C 0.362 3.638 6 O -0.386 6.386 7 N -0.317 5.317 8 C 0.126 3.874 9 C -0.573 4.573 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.528 5.528 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.008 4.008 18 C -0.091 4.091 19 C -0.103 4.103 20 N -0.121 5.121 21 C 0.284 3.716 22 O -0.225 6.225 23 N -0.371 5.371 24 C 0.356 3.644 25 O -0.410 6.410 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.209 0.791 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -6.198 -11.450 1.373 13.092 hybrid contribution -0.594 1.164 -0.516 1.405 sum -6.793 -10.286 0.857 12.356 Atomic orbital electron populations 1.22296 0.75638 1.05678 1.04641 1.46130 1.10835 1.07108 1.59323 1.22718 0.91497 0.91275 0.85220 1.19825 0.92488 0.94889 1.22238 1.17176 0.80824 0.81577 0.84272 1.90829 1.45881 1.69807 1.32102 1.48182 1.56939 1.20719 1.05888 1.19436 0.93375 0.75762 0.98848 1.21365 0.94980 0.91371 1.49559 0.92332 1.24905 0.95353 0.98600 0.94952 1.69908 1.15196 1.18737 1.48966 0.86521 0.81251 0.81387 0.78383 1.20625 1.21073 1.19914 1.21288 0.93826 0.99029 0.86614 1.19849 1.00360 1.01967 0.86905 1.29100 0.93519 0.93102 0.94555 1.81203 1.09146 1.09765 1.11939 1.20191 0.84530 0.88297 0.78612 1.85092 1.14646 1.37367 1.85346 1.69635 1.05677 1.27377 1.34429 1.17362 0.84675 0.83009 0.79400 1.90982 1.65930 1.30123 1.53928 0.89909 0.88937 0.88158 0.79091 0.94369 0.93106 0.92521 0.88521 0.91404 0.87662 0.86142 0.72611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.35 59.85 0.62 1.03 16 2 N -0.52 -5.53 2.96 -128.87 -0.38 -5.92 16 3 C 0.23 2.37 9.05 -16.15 -0.15 2.22 16 4 C -0.28 -3.70 4.21 -104.70 -0.44 -4.14 16 5 C 0.58 9.81 6.72 -12.57 -0.08 9.72 16 6 O -0.51 -11.18 16.66 5.26 0.09 -11.09 16 7 N -0.59 -9.64 2.46 -176.37 -0.43 -10.07 16 8 C 0.24 5.28 5.22 -5.20 -0.03 5.26 16 9 C -0.53 -12.96 9.39 -34.44 -0.32 -13.28 16 10 H 0.06 1.37 7.81 -52.48 -0.41 0.96 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -23.99 13.29 55.43 0.74 -23.25 16 13 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 C 0.12 1.44 5.32 -4.04 -0.02 1.42 16 18 C -0.05 -0.51 6.03 -29.51 -0.18 -0.69 16 19 C 0.22 2.62 15.43 -20.77 -0.32 2.30 16 20 N -0.44 -6.55 18.54 42.15 0.78 -5.77 16 21 C 0.49 6.21 7.93 -15.91 -0.13 6.08 16 22 O -0.43 -4.72 13.08 -16.76 -0.22 -4.94 16 23 N -0.61 -8.70 10.38 -16.47 -0.17 -8.87 16 24 C 0.65 9.53 8.32 -88.50 -0.74 8.80 16 25 O -0.53 -9.35 16.66 5.00 0.08 -9.26 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.36 8.02 -51.93 -0.42 -0.06 16 28 H 0.10 0.78 7.35 -51.93 -0.38 0.40 16 29 H 0.19 1.39 8.05 -52.49 -0.42 0.96 16 30 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.05 1.28 7.35 -51.93 -0.38 0.90 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.10 1.20 8.11 -51.93 -0.42 0.78 16 34 H 0.07 0.69 5.77 -51.93 -0.30 0.39 16 35 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.42 2.59 8.98 45.56 0.41 2.99 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -36.14 340.55 -4.43 -40.57 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -3.15 Total: -1.52 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: -1.88 Total: 20.27 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.53 Total: -53.88 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.14 -4.43 -40.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771595621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.593 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds