Wall clock time and date at job start Fri Apr 10 2020 17:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99918 * 2 1 4 4 H 1.48493 * 109.47282 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47047 * 300.00093 * 3 2 1 6 6 H 1.48501 * 109.46809 * 59.99809 * 3 2 1 7 7 C 1.37875 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00248 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99629 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00206 * 84.32202 * 10 9 7 12 12 C 1.50698 * 109.47032 * 90.00067 * 11 10 9 13 13 C 1.38229 * 119.61911 * 94.99968 * 12 11 10 14 14 C 1.38632 * 119.15975 * 179.74529 * 13 12 11 15 15 C 1.38670 * 118.42267 * 0.25595 * 14 13 12 16 16 C 1.38186 * 119.16320 * 0.02562 * 15 14 13 17 17 N 1.31862 * 119.61787 * 275.24505 * 12 11 10 18 18 C 1.34782 * 119.99954 * 264.32354 * 10 9 7 19 19 O 1.21281 * 119.99971 * 184.43246 * 18 10 9 20 20 C 1.50698 * 119.99835 * 4.43295 * 18 10 9 21 21 H 1.09004 * 109.52480 * 45.49612 * 20 18 10 22 22 C 1.53149 * 109.52248 * 285.37011 * 20 18 10 23 23 O 1.43071 * 109.14815 * 184.78849 * 22 20 18 24 24 C 1.43072 * 113.59576 * 57.94950 * 23 22 20 25 25 C 1.53135 * 109.15336 * 302.04612 * 24 23 22 26 26 O 1.43071 * 109.52376 * 165.63209 * 20 18 10 27 27 H 0.97003 * 120.00049 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47287 * 60.00397 * 9 7 2 29 29 H 1.08999 * 109.47506 * 300.00135 * 9 7 2 30 30 H 1.09000 * 109.47287 * 330.00355 * 11 10 9 31 31 H 1.08997 * 109.47391 * 210.00220 * 11 10 9 32 32 H 1.07995 * 120.41835 * 0.02918 * 13 12 11 33 33 H 1.08001 * 120.78910 * 180.22998 * 14 13 12 34 34 H 1.07999 * 120.42040 * 179.97438 * 15 14 13 35 35 H 1.07993 * 119.61518 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.52111 * 304.68380 * 22 20 18 37 37 H 1.08994 * 109.52234 * 64.81678 * 22 20 18 38 38 H 1.09006 * 109.52236 * 61.95301 * 24 23 22 39 39 H 1.09000 * 109.52823 * 182.07976 * 24 23 22 40 40 H 1.09003 * 109.52906 * 175.20942 * 25 24 23 41 41 H 1.09004 * 109.52691 * 295.34706 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7746 -4.0878 1.2619 12 6 1.8959 -5.1695 1.8354 13 6 2.1912 -6.4958 1.5813 14 6 1.3796 -7.4833 2.1180 15 6 0.2934 -7.0981 2.8891 16 6 0.0573 -5.7522 3.0951 17 7 0.8515 -4.8398 2.5696 18 6 2.5533 -4.1998 -1.1621 19 8 3.2782 -5.1722 -1.1556 20 6 2.0441 -3.6482 -2.4688 21 1 2.1510 -2.5634 -2.4726 22 6 0.5677 -4.0175 -2.6396 23 8 0.1227 -3.5880 -3.9297 24 6 0.8748 -4.1478 -5.0105 25 6 2.3511 -3.7784 -4.8397 26 8 2.7971 -4.2068 -3.5494 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8375 -3.2590 1.9671 31 1 3.7723 -4.4877 1.0814 32 1 3.0460 -6.7595 0.9762 33 1 1.5881 -8.5278 1.9393 34 1 -0.3603 -7.8405 3.3225 35 1 -0.7863 -5.4441 3.6948 36 1 0.4503 -5.0979 -2.5549 37 1 -0.0227 -3.5252 -1.8669 38 1 0.7676 -5.2325 -5.0055 39 1 0.5057 -3.7497 -5.9558 40 1 2.9418 -4.2718 -5.6117 41 1 2.4687 -2.6982 -4.9256 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171547405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:41 Heat of formation + Delta-G solvation = -75.023344 kcal Electronic energy + Delta-G solvation = -26066.926544 eV Core-core repulsion = 22333.720703 eV Total energy + Delta-G solvation = -3733.205841 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30445 -39.78037 -38.35959 -35.80913 -35.08994 -32.91430 -32.21415 -31.94505 -30.90440 -28.20357 -27.45053 -26.07940 -24.57552 -23.33023 -22.85145 -22.09232 -21.17741 -18.91318 -17.04432 -16.91479 -16.47894 -16.38396 -16.27414 -15.79742 -15.70993 -15.26503 -15.05380 -14.96530 -14.57660 -14.05234 -13.70185 -13.42659 -13.11577 -13.04655 -12.69509 -12.53184 -12.46319 -12.02171 -11.59638 -11.54344 -11.34933 -11.17598 -10.95727 -10.75040 -10.55666 -10.24760 -10.16700 -9.77757 -9.65420 -9.24052 -9.13494 -8.93698 -8.74165 -8.52599 -7.85391 -6.17436 -4.24828 1.28337 1.50567 3.07715 3.23285 3.32080 3.34234 3.37795 3.93417 4.04114 4.31065 4.46795 4.57798 4.80990 4.96670 5.02857 5.09836 5.16494 5.17183 5.24059 5.25803 5.35532 5.38110 5.43859 5.68590 5.76325 5.78141 5.83582 5.98448 6.00681 6.08590 6.20740 6.34790 6.38905 6.69427 6.91150 7.05804 7.15650 7.28386 7.47666 7.75760 8.02482 8.18562 8.31222 8.72664 8.88047 9.42547 10.89531 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.009127 B = 0.006719 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.193351 B = 4166.116005 C = 6202.696056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.224 3.776 10 N -0.582 5.582 11 C 0.171 3.829 12 C 0.118 3.882 13 C -0.151 4.151 14 C -0.084 4.084 15 C -0.181 4.181 16 C 0.094 3.906 17 N -0.462 5.462 18 C 0.527 3.473 19 O -0.550 6.550 20 C 0.042 3.958 21 H 0.110 0.890 22 C 0.036 3.964 23 O -0.370 6.370 24 C 0.021 3.979 25 C 0.024 3.976 26 O -0.358 6.358 27 H 0.265 0.735 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.056 0.944 37 H 0.126 0.874 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.317 -10.995 -1.692 11.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.105 3.895 10 N -0.314 5.314 11 C 0.047 3.953 12 C -0.021 4.021 13 C -0.171 4.171 14 C -0.110 4.110 15 C -0.201 4.201 16 C -0.063 4.063 17 N -0.172 5.172 18 C 0.313 3.687 19 O -0.428 6.428 20 C -0.019 4.019 21 H 0.128 0.872 22 C -0.041 4.041 23 O -0.288 6.288 24 C -0.057 4.057 25 C -0.053 4.053 26 O -0.276 6.276 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.170 0.830 36 H 0.075 0.925 37 H 0.143 0.857 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.357 -10.465 -1.540 10.584 hybrid contribution 0.419 0.096 -0.185 0.468 sum 0.776 -10.369 -1.725 10.540 Atomic orbital electron populations 1.69925 1.05967 1.27256 1.49228 1.24920 0.94840 0.99240 0.94614 0.86473 0.80137 0.83315 0.77754 1.19650 1.20846 1.20804 1.21481 0.93659 0.90343 1.52572 0.91908 1.19826 0.87650 0.82388 0.99609 1.48107 1.45264 1.34363 1.03622 1.20158 0.94158 0.94940 0.86086 1.21861 0.93256 0.93775 0.93188 1.22147 1.01394 0.93498 1.00066 1.21549 0.94213 0.99769 0.95479 1.22095 0.99063 0.97814 1.01108 1.22770 0.97709 0.89066 0.96783 1.67605 1.03410 1.38346 1.07805 1.19805 0.80938 0.83112 0.84822 1.90593 1.38190 1.26629 1.87421 1.22576 0.91992 1.00471 0.86826 0.87218 1.23382 0.94204 1.00030 0.86492 1.88159 1.56174 1.70553 1.13915 1.23254 0.92245 0.98710 0.91449 1.23258 0.95296 1.00652 0.86099 1.88136 1.55897 1.70468 1.13089 0.92509 0.93811 0.93132 0.88048 0.89288 0.84371 0.85291 0.85301 0.83019 0.92544 0.85663 0.92425 0.87940 0.87860 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.33 13.29 55.43 0.74 -23.59 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.54 -13.94 9.16 -34.44 -0.32 -14.26 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.22 5.28 4.77 -5.19 -0.02 5.26 16 10 N -0.58 -12.23 2.44 -176.44 -0.43 -12.66 16 11 C 0.17 3.21 5.70 -5.20 -0.03 3.18 16 12 C 0.12 2.09 6.36 -82.58 -0.53 1.56 16 13 C -0.15 -2.35 9.72 -39.44 -0.38 -2.73 16 14 C -0.08 -1.09 10.18 -39.28 -0.40 -1.49 16 15 C -0.18 -2.22 10.11 -39.44 -0.40 -2.61 16 16 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 17 N -0.46 -8.28 10.27 -9.47 -0.10 -8.37 16 18 C 0.53 11.17 7.00 -10.98 -0.08 11.09 16 19 O -0.55 -12.32 15.97 -13.88 -0.22 -12.54 16 20 C 0.04 0.84 2.42 -27.81 -0.07 0.77 16 21 H 0.11 2.34 7.44 -51.93 -0.39 1.96 16 22 C 0.04 0.66 6.03 37.23 0.22 0.88 16 23 O -0.37 -6.50 10.85 -48.76 -0.53 -7.03 16 24 C 0.02 0.28 7.05 37.23 0.26 0.54 16 25 C 0.02 0.34 7.05 37.23 0.26 0.61 16 26 O -0.36 -6.76 10.07 -62.31 -0.63 -7.39 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.04 1.05 4.01 -51.93 -0.21 0.85 16 29 H 0.05 1.29 8.11 -51.93 -0.42 0.87 16 30 H 0.10 1.94 8.07 -51.93 -0.42 1.52 16 31 H 0.09 1.58 7.39 -51.93 -0.38 1.19 16 32 H 0.14 2.14 7.84 -52.49 -0.41 1.73 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.13 2.45 5.54 -51.93 -0.29 2.16 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 345.33 15.07 5.20 5.20 Total: -1.00 -31.13 345.33 -8.20 -39.33 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.44 Total: 5.91 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -1.77 Total: 5.64 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.21 Total: -44.62 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -1.38 Total: -26.96 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.13 -8.20 -39.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171547405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.695 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds