Wall clock time and date at job start Fri Apr 10 2020 17:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99918 * 2 1 4 4 H 1.48493 * 109.47282 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47047 * 300.00093 * 3 2 1 6 6 H 1.48501 * 109.46809 * 59.99809 * 3 2 1 7 7 C 1.37875 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00248 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99629 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00206 * 84.32202 * 10 9 7 12 12 C 1.50698 * 109.47032 * 90.00067 * 11 10 9 13 13 C 1.38229 * 119.61911 * 94.99968 * 12 11 10 14 14 C 1.38632 * 119.15975 * 179.74529 * 13 12 11 15 15 C 1.38670 * 118.42267 * 0.25595 * 14 13 12 16 16 C 1.38186 * 119.16320 * 0.02562 * 15 14 13 17 17 N 1.31862 * 119.61787 * 275.24505 * 12 11 10 18 18 C 1.34782 * 119.99954 * 264.32354 * 10 9 7 19 19 O 1.21281 * 119.99971 * 184.43246 * 18 10 9 20 20 C 1.50698 * 119.99835 * 4.43295 * 18 10 9 21 21 H 1.09004 * 109.52480 * 45.49612 * 20 18 10 22 22 C 1.53149 * 109.52248 * 285.37011 * 20 18 10 23 23 O 1.43071 * 109.14815 * 184.78849 * 22 20 18 24 24 C 1.43072 * 113.59576 * 57.94950 * 23 22 20 25 25 C 1.53135 * 109.15336 * 302.04612 * 24 23 22 26 26 O 1.43071 * 109.52376 * 165.63209 * 20 18 10 27 27 H 0.97003 * 120.00049 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47287 * 60.00397 * 9 7 2 29 29 H 1.08999 * 109.47506 * 300.00135 * 9 7 2 30 30 H 1.09000 * 109.47287 * 330.00355 * 11 10 9 31 31 H 1.08997 * 109.47391 * 210.00220 * 11 10 9 32 32 H 1.07995 * 120.41835 * 0.02918 * 13 12 11 33 33 H 1.08001 * 120.78910 * 180.22998 * 14 13 12 34 34 H 1.07999 * 120.42040 * 179.97438 * 15 14 13 35 35 H 1.07993 * 119.61518 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.52111 * 304.68380 * 22 20 18 37 37 H 1.08994 * 109.52234 * 64.81678 * 22 20 18 38 38 H 1.09006 * 109.52236 * 61.95301 * 24 23 22 39 39 H 1.09000 * 109.52823 * 182.07976 * 24 23 22 40 40 H 1.09003 * 109.52906 * 175.20942 * 25 24 23 41 41 H 1.09004 * 109.52691 * 295.34706 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7746 -4.0878 1.2619 12 6 1.8959 -5.1695 1.8354 13 6 2.1912 -6.4958 1.5813 14 6 1.3796 -7.4833 2.1180 15 6 0.2934 -7.0981 2.8891 16 6 0.0573 -5.7522 3.0951 17 7 0.8515 -4.8398 2.5696 18 6 2.5533 -4.1998 -1.1621 19 8 3.2782 -5.1722 -1.1556 20 6 2.0441 -3.6482 -2.4688 21 1 2.1510 -2.5634 -2.4726 22 6 0.5677 -4.0175 -2.6396 23 8 0.1227 -3.5880 -3.9297 24 6 0.8748 -4.1478 -5.0105 25 6 2.3511 -3.7784 -4.8397 26 8 2.7971 -4.2068 -3.5494 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8375 -3.2590 1.9671 31 1 3.7723 -4.4877 1.0814 32 1 3.0460 -6.7595 0.9762 33 1 1.5881 -8.5278 1.9393 34 1 -0.3603 -7.8405 3.3225 35 1 -0.7863 -5.4441 3.6948 36 1 0.4503 -5.0979 -2.5549 37 1 -0.0227 -3.5252 -1.8669 38 1 0.7676 -5.2325 -5.0055 39 1 0.5057 -3.7497 -5.9558 40 1 2.9418 -4.2718 -5.6117 41 1 2.4687 -2.6982 -4.9256 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171547405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:40 Heat of formation + Delta-G solvation = -94.733279 kcal Electronic energy + Delta-G solvation = -26067.781231 eV Core-core repulsion = 22333.720703 eV Total energy + Delta-G solvation = -3734.060528 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76836 -41.01247 -39.85622 -37.26874 -36.74948 -34.72982 -33.56873 -33.24394 -32.19857 -29.56993 -29.25880 -27.54501 -26.04057 -24.84020 -24.30943 -23.33174 -22.50276 -20.49833 -18.80056 -18.50156 -17.93258 -17.79565 -17.64622 -17.11523 -17.04790 -16.54510 -16.46784 -16.37870 -16.32803 -15.50992 -15.19430 -14.71847 -14.47070 -14.32918 -14.17106 -14.04271 -13.89210 -13.69951 -13.14304 -13.01595 -12.82138 -12.69568 -12.60721 -12.44029 -12.12289 -11.85202 -11.72609 -11.55108 -10.85243 -10.77957 -10.58992 -10.38050 -10.29557 -9.95048 -9.57023 -8.20358 -6.34627 0.13128 0.40533 1.40200 1.40609 1.45340 1.54486 1.85638 2.39929 2.63511 2.79663 3.05420 3.10318 3.34179 3.48567 3.57321 3.81776 3.83656 3.97925 4.03969 4.12848 4.18988 4.25128 4.26963 4.38170 4.47959 4.48939 4.59789 4.73949 4.77103 4.77532 4.88448 4.90754 5.21970 5.24712 5.28357 5.54249 5.72595 5.82624 5.86627 5.90463 6.02941 6.43453 6.75627 7.11473 7.13125 7.36712 8.86014 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.009127 B = 0.006719 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.193351 B = 4166.116005 C = 6202.696056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.244 3.756 10 N -0.582 5.582 11 C 0.170 3.830 12 C 0.093 3.907 13 C -0.160 4.160 14 C -0.079 4.079 15 C -0.162 4.162 16 C 0.080 3.920 17 N -0.503 5.503 18 C 0.523 3.477 19 O -0.563 6.563 20 C 0.050 3.950 21 H 0.088 0.912 22 C 0.048 3.952 23 O -0.387 6.387 24 C 0.016 3.984 25 C 0.015 3.985 26 O -0.377 6.377 27 H 0.268 0.732 28 H 0.040 0.960 29 H 0.026 0.974 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -12.433 -2.310 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.589 4.589 8 H 0.073 0.927 9 C 0.123 3.877 10 N -0.312 5.312 11 C 0.046 3.954 12 C -0.045 4.045 13 C -0.180 4.180 14 C -0.105 4.105 15 C -0.182 4.182 16 C -0.077 4.077 17 N -0.213 5.213 18 C 0.311 3.689 19 O -0.443 6.443 20 C -0.012 4.012 21 H 0.106 0.894 22 C -0.029 4.029 23 O -0.306 6.306 24 C -0.060 4.060 25 C -0.061 4.061 26 O -0.296 6.296 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.151 0.849 33 H 0.183 0.817 34 H 0.190 0.810 35 H 0.192 0.808 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.077 -11.910 -2.162 12.105 hybrid contribution 0.485 0.452 -0.016 0.663 sum 0.561 -11.458 -2.178 11.677 Atomic orbital electron populations 1.70018 1.07196 1.28135 1.50051 1.25636 0.95578 1.02268 0.94244 0.85529 0.78895 0.79496 0.77901 1.19450 1.20223 1.20353 1.21677 0.93386 0.91534 1.52348 0.92701 1.19410 0.87550 0.82572 0.98124 1.48050 1.44771 1.33756 1.04667 1.20184 0.94940 0.95256 0.84995 1.21558 0.93936 0.94061 0.94902 1.22159 1.02011 0.93293 1.00579 1.21979 0.93400 1.00856 0.94259 1.22526 0.98679 0.97619 0.99351 1.23287 0.97786 0.89949 0.96723 1.67503 1.04323 1.40413 1.09025 1.20069 0.80669 0.82937 0.85260 1.90565 1.38876 1.27227 1.87675 1.22357 0.92999 0.98966 0.86844 0.89431 1.23108 0.92796 1.00034 0.87003 1.88128 1.57023 1.71236 1.14177 1.23582 0.91434 0.99642 0.91380 1.23634 0.96494 1.01205 0.84739 1.88105 1.56400 1.70654 1.14419 0.92296 0.94194 0.95587 0.89452 0.88800 0.84883 0.81713 0.81011 0.80811 0.91789 0.87549 0.91214 0.84405 0.84206 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.31 13.29 21.45 0.28 -51.03 16 2 C 0.02 1.27 5.46 84.65 0.46 1.73 16 3 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.55 -29.34 9.16 25.60 0.23 -29.10 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.24 12.04 4.77 85.63 0.41 12.45 16 10 N -0.58 -25.59 2.44 -830.50 -2.03 -27.61 16 11 C 0.17 6.74 5.70 85.63 0.49 7.23 16 12 C 0.09 3.39 6.36 42.55 0.27 3.66 16 13 C -0.16 -4.92 9.72 22.36 0.22 -4.71 16 14 C -0.08 -1.84 10.18 22.47 0.23 -1.61 16 15 C -0.16 -3.47 10.11 22.36 0.23 -3.24 16 16 C 0.08 2.20 11.18 84.67 0.95 3.15 16 17 N -0.50 -18.36 10.27 -183.88 -1.89 -20.25 16 18 C 0.52 22.87 7.00 87.66 0.61 23.49 16 19 O -0.56 -25.70 15.97 15.55 0.25 -25.46 16 20 C 0.05 2.01 2.42 29.90 0.07 2.09 16 21 H 0.09 3.91 7.44 -2.39 -0.02 3.89 16 22 C 0.05 1.79 6.03 72.03 0.43 2.23 16 23 O -0.39 -13.36 10.85 -136.05 -1.48 -14.83 16 24 C 0.02 0.39 7.05 72.03 0.51 0.90 16 25 C 0.02 0.41 7.05 72.03 0.51 0.92 16 26 O -0.38 -14.10 10.07 -123.09 -1.24 -15.34 16 27 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.04 2.03 4.01 -2.39 -0.01 2.02 16 29 H 0.03 1.41 8.11 -2.39 -0.02 1.39 16 30 H 0.09 3.60 8.07 -2.39 -0.02 3.58 16 31 H 0.09 3.52 7.39 -2.39 -0.02 3.50 16 32 H 0.13 4.15 7.84 -2.91 -0.02 4.13 16 33 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.11 4.35 5.54 -2.39 -0.01 4.34 16 38 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -68.89 345.33 2.59 -66.31 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 1.04 Total: 24.46 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 5.62 Total: 19.17 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -3.63 Total: -98.89 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -2.47 Total: -55.62 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -68.89 2.59 -66.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171547405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.424 kcal (2) G-P(sol) polarization free energy of solvation -68.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds