Wall clock time and date at job start Fri Apr 10 2020 17:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99987 * 2 1 4 4 H 1.48497 * 109.47012 * 269.99898 * 3 2 1 5 5 H 1.48502 * 109.46839 * 29.99552 * 3 2 1 6 6 H 1.48492 * 109.47066 * 149.99534 * 3 2 1 7 7 C 1.37878 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99586 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00092 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47017 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46978 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.47163 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00361 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99713 * 0.02562 * 13 12 11 15 15 C 1.47594 * 120.00311 * 180.02562 * 13 12 11 16 16 C 1.39740 * 120.08984 * 180.02562 * 15 13 12 17 17 C 1.37701 * 119.91009 * 180.30153 * 16 15 13 18 18 C 1.39001 * 120.09036 * 359.43945 * 17 16 15 19 19 O 1.35703 * 119.91238 * 180.25651 * 18 17 16 20 20 C 1.42896 * 117.00248 * 0.30191 * 19 18 17 21 21 C 1.50698 * 109.47488 * 179.97438 * 20 19 18 22 22 N 1.34782 * 120.00258 * 179.97438 * 21 20 19 23 23 O 1.21279 * 119.99802 * 359.97438 * 21 20 19 24 24 C 1.38991 * 120.17182 * 0.55638 * 18 17 16 25 25 C 1.37709 * 120.09342 * 359.72834 * 24 18 17 26 26 H 0.97000 * 120.00247 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46770 * 60.00282 * 9 7 2 28 28 H 1.08992 * 109.47099 * 300.00215 * 9 7 2 29 29 H 1.08997 * 109.47597 * 59.99703 * 10 9 7 30 30 H 1.09005 * 109.47226 * 300.00104 * 10 9 7 31 31 H 1.08999 * 109.47283 * 60.00382 * 11 10 9 32 32 H 1.08991 * 109.47484 * 299.99652 * 11 10 9 33 33 H 0.97004 * 119.99940 * 0.02562 * 12 11 10 34 34 H 1.08002 * 120.04019 * 0.02562 * 16 15 13 35 35 H 1.08004 * 119.95167 * 179.69662 * 17 16 15 36 36 H 1.09007 * 109.47438 * 299.99775 * 20 19 18 37 37 H 1.09005 * 109.47494 * 59.99569 * 20 19 18 38 38 H 0.96997 * 119.99878 * 359.97438 * 22 21 20 39 39 H 0.97002 * 119.99863 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.95502 * 179.69764 * 24 18 17 41 41 H 1.08003 * 120.04475 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5515 -2.6364 0.0022 12 7 6.0399 -4.0177 0.0027 13 6 7.3650 -4.2640 0.0033 14 8 8.1551 -3.3398 0.0039 15 6 7.8570 -5.6555 0.0032 16 6 9.2305 -5.9130 0.0044 17 6 9.6854 -7.2126 -0.0020 18 6 8.7806 -8.2678 0.0022 19 8 9.2330 -9.5472 0.0012 20 6 10.6496 -9.7345 0.0024 21 6 10.9615 -11.2088 0.0017 22 7 12.2430 -11.6266 0.0021 23 8 10.0594 -12.0194 0.0007 24 6 7.4137 -8.0159 0.0012 25 6 6.9506 -6.7190 0.0017 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6800 0.8912 28 1 3.8752 -0.6804 -0.8888 29 1 3.6586 -3.1502 -0.8892 30 1 3.6579 -3.1506 0.8907 31 1 5.9142 -2.1230 0.8927 32 1 5.9156 -2.1224 -0.8872 33 1 5.4096 -4.7550 0.0019 34 1 9.9341 -5.0936 0.0057 35 1 10.7468 -7.4124 -0.0061 36 1 11.0781 -9.2717 -0.8867 37 1 11.0764 -9.2736 0.8933 38 1 12.9644 -10.9783 0.0024 39 1 12.4437 -12.5756 0.0012 40 1 6.7138 -8.8384 -0.0004 41 1 5.8883 -6.5241 0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171594287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:51 Heat of formation + Delta-G solvation = -96.141467 kcal Electronic energy + Delta-G solvation = -23039.565353 eV Core-core repulsion = 19305.443761 eV Total energy + Delta-G solvation = -3734.121592 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98527 -40.03265 -39.21723 -37.28719 -35.55672 -34.38644 -33.39171 -31.77667 -31.50535 -30.58440 -28.85976 -27.14559 -23.99803 -23.36897 -22.38950 -21.40388 -20.73350 -20.02240 -18.99548 -18.32691 -17.65921 -16.96511 -16.96170 -16.73978 -16.19815 -15.47799 -15.42220 -15.12853 -14.84444 -14.33694 -14.27820 -14.05609 -13.93065 -13.79838 -13.12893 -12.92107 -12.79268 -12.66358 -12.05694 -11.93161 -11.52852 -11.32841 -11.07765 -10.89633 -10.58625 -10.39644 -10.25112 -9.99194 -9.79865 -9.61611 -9.46391 -9.22968 -8.95693 -8.58889 -8.55448 -6.06239 -4.05044 0.61503 0.96902 1.91487 2.07056 2.74988 3.20141 3.28497 3.31418 3.39009 3.43144 3.64248 4.04669 4.26336 4.35659 4.40283 4.44445 4.45476 4.69487 4.87927 4.96941 5.15330 5.27834 5.51909 5.63442 5.64953 5.78090 5.87853 6.00705 6.04248 6.05553 6.20721 6.33190 6.43820 6.54944 6.68342 6.78213 6.84209 7.22350 7.35886 7.55302 7.60175 7.76348 8.28014 8.50291 8.97592 9.55954 11.06948 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.043683 B = 0.001868 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.822468 B =14986.204148 C =15595.975595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.721 5.721 13 C 0.556 3.444 14 O -0.545 6.545 15 C -0.167 4.167 16 C -0.019 4.019 17 C -0.220 4.220 18 C 0.149 3.851 19 O -0.287 6.287 20 C 0.037 3.963 21 C 0.520 3.480 22 N -0.851 5.851 23 O -0.516 6.516 24 C -0.152 4.152 25 C -0.044 4.044 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.404 0.596 39 H 0.409 0.591 40 H 0.140 0.860 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.153 -21.758 0.029 34.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.372 5.372 13 C 0.343 3.657 14 O -0.424 6.424 15 C -0.170 4.170 16 C -0.038 4.038 17 C -0.239 4.239 18 C 0.103 3.897 19 O -0.199 6.199 20 C -0.042 4.042 21 C 0.303 3.697 22 N -0.417 5.417 23 O -0.390 6.390 24 C -0.171 4.171 25 C -0.063 4.063 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.234 0.766 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.232 0.768 39 H 0.242 0.758 40 H 0.158 0.842 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 26.683 -21.512 0.032 34.275 hybrid contribution 0.715 0.621 -0.024 0.948 sum 27.398 -20.891 0.009 34.454 Atomic orbital electron populations 1.69911 1.06313 1.26954 1.50976 1.25027 0.94742 0.99224 0.94458 0.86777 0.80408 0.83544 0.78580 1.20257 1.21366 1.18896 1.21099 0.89311 0.94528 1.51127 0.90988 1.19502 0.97279 0.91442 0.96688 1.21718 0.90569 1.01126 1.01812 1.21685 0.96183 0.80889 1.02093 1.46095 1.06488 1.10173 1.74417 1.18144 0.82646 0.88288 0.76635 1.90767 1.55446 1.45713 1.50524 1.19973 0.94397 0.93219 1.09455 1.21056 0.94630 0.96281 0.91804 1.21181 0.99480 0.92597 1.10643 1.19261 0.93586 0.82486 0.94408 1.86117 1.21592 1.23984 1.88187 1.22496 0.82370 0.94911 1.04417 1.20044 0.83279 0.90201 0.76211 1.43653 1.07070 1.12431 1.78587 1.90834 1.45442 1.55569 1.47174 1.20374 0.92507 0.97541 1.06678 1.21202 0.99750 0.91078 0.94231 0.92698 0.96276 0.96718 0.92043 0.92025 0.91606 0.91609 0.76606 0.84185 0.84884 0.88453 0.88456 0.76775 0.75845 0.84179 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 11 C 0.11 1.88 5.67 -4.04 -0.02 1.85 16 12 N -0.72 -9.93 5.51 -61.33 -0.34 -10.27 16 13 C 0.56 8.11 7.76 -12.44 -0.10 8.01 16 14 O -0.55 -9.86 16.34 5.29 0.09 -9.78 16 15 C -0.17 -1.92 5.87 -104.96 -0.62 -2.54 16 16 C -0.02 -0.19 9.58 -39.22 -0.38 -0.56 16 17 C -0.22 -1.73 9.01 -39.49 -0.36 -2.09 16 18 C 0.15 1.34 6.70 -39.02 -0.26 1.08 16 19 O -0.29 -2.64 9.66 -38.72 -0.37 -3.01 16 20 C 0.04 0.18 5.21 36.00 0.19 0.37 16 21 C 0.52 3.37 8.18 -10.98 -0.09 3.28 16 22 N -0.85 -1.60 8.87 31.22 0.28 -1.32 16 23 O -0.52 -6.22 17.34 -14.35 -0.25 -6.47 16 24 C -0.15 -1.40 9.97 -39.50 -0.39 -1.79 16 25 C -0.04 -0.41 9.53 -39.22 -0.37 -0.79 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 28 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.40 4.38 6.49 -40.82 -0.27 4.12 16 34 H 0.14 1.38 7.64 -52.49 -0.40 0.98 16 35 H 0.13 0.60 6.28 -52.48 -0.33 0.27 16 36 H 0.10 0.23 7.64 -51.93 -0.40 -0.17 16 37 H 0.10 0.23 7.67 -51.93 -0.40 -0.17 16 38 H 0.40 -0.63 8.83 -40.82 -0.36 -0.99 16 39 H 0.41 0.55 8.93 -40.82 -0.36 0.19 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.14 1.02 6.39 -52.48 -0.34 0.68 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -38.34 353.39 -7.57 -45.90 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.32 Total: -1.50 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -3.08 Total: -8.98 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.71 Total: -38.53 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.54 Total: -19.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.34 -7.57 -45.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.238 kcal (2) G-P(sol) polarization free energy of solvation -38.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds