Wall clock time and date at job start Fri Apr 10 2020 17:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99987 * 2 1 4 4 H 1.48497 * 109.47012 * 269.99898 * 3 2 1 5 5 H 1.48502 * 109.46839 * 29.99552 * 3 2 1 6 6 H 1.48492 * 109.47066 * 149.99534 * 3 2 1 7 7 C 1.37878 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99586 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00092 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47017 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46978 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.47163 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00361 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99713 * 0.02562 * 13 12 11 15 15 C 1.47594 * 120.00311 * 180.02562 * 13 12 11 16 16 C 1.39740 * 120.08984 * 180.02562 * 15 13 12 17 17 C 1.37701 * 119.91009 * 180.30153 * 16 15 13 18 18 C 1.39001 * 120.09036 * 359.43945 * 17 16 15 19 19 O 1.35703 * 119.91238 * 180.25651 * 18 17 16 20 20 C 1.42896 * 117.00248 * 0.30191 * 19 18 17 21 21 C 1.50698 * 109.47488 * 179.97438 * 20 19 18 22 22 N 1.34782 * 120.00258 * 179.97438 * 21 20 19 23 23 O 1.21279 * 119.99802 * 359.97438 * 21 20 19 24 24 C 1.38991 * 120.17182 * 0.55638 * 18 17 16 25 25 C 1.37709 * 120.09342 * 359.72834 * 24 18 17 26 26 H 0.97000 * 120.00247 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46770 * 60.00282 * 9 7 2 28 28 H 1.08992 * 109.47099 * 300.00215 * 9 7 2 29 29 H 1.08997 * 109.47597 * 59.99703 * 10 9 7 30 30 H 1.09005 * 109.47226 * 300.00104 * 10 9 7 31 31 H 1.08999 * 109.47283 * 60.00382 * 11 10 9 32 32 H 1.08991 * 109.47484 * 299.99652 * 11 10 9 33 33 H 0.97004 * 119.99940 * 0.02562 * 12 11 10 34 34 H 1.08002 * 120.04019 * 0.02562 * 16 15 13 35 35 H 1.08004 * 119.95167 * 179.69662 * 17 16 15 36 36 H 1.09007 * 109.47438 * 299.99775 * 20 19 18 37 37 H 1.09005 * 109.47494 * 59.99569 * 20 19 18 38 38 H 0.96997 * 119.99878 * 359.97438 * 22 21 20 39 39 H 0.97002 * 119.99863 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.95502 * 179.69764 * 24 18 17 41 41 H 1.08003 * 120.04475 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5515 -2.6364 0.0022 12 7 6.0399 -4.0177 0.0027 13 6 7.3650 -4.2640 0.0033 14 8 8.1551 -3.3398 0.0039 15 6 7.8570 -5.6555 0.0032 16 6 9.2305 -5.9130 0.0044 17 6 9.6854 -7.2126 -0.0020 18 6 8.7806 -8.2678 0.0022 19 8 9.2330 -9.5472 0.0012 20 6 10.6496 -9.7345 0.0024 21 6 10.9615 -11.2088 0.0017 22 7 12.2430 -11.6266 0.0021 23 8 10.0594 -12.0194 0.0007 24 6 7.4137 -8.0159 0.0012 25 6 6.9506 -6.7190 0.0017 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6800 0.8912 28 1 3.8752 -0.6804 -0.8888 29 1 3.6586 -3.1502 -0.8892 30 1 3.6579 -3.1506 0.8907 31 1 5.9142 -2.1230 0.8927 32 1 5.9156 -2.1224 -0.8872 33 1 5.4096 -4.7550 0.0019 34 1 9.9341 -5.0936 0.0057 35 1 10.7468 -7.4124 -0.0061 36 1 11.0781 -9.2717 -0.8867 37 1 11.0764 -9.2736 0.8933 38 1 12.9644 -10.9783 0.0024 39 1 12.4437 -12.5756 0.0012 40 1 6.7138 -8.8384 -0.0004 41 1 5.8883 -6.5241 0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171594287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:51 Heat of formation + Delta-G solvation = -125.962098 kcal Electronic energy + Delta-G solvation = -23040.858473 eV Core-core repulsion = 19305.443761 eV Total energy + Delta-G solvation = -3735.414712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.64369 -40.86237 -39.96593 -38.03909 -36.98707 -35.18377 -34.79485 -33.43547 -32.20585 -31.53027 -29.44134 -28.71798 -25.27570 -24.09418 -23.60563 -22.27176 -21.85006 -21.20042 -19.61604 -19.03982 -18.78333 -18.32070 -17.47050 -17.41604 -17.12617 -16.71500 -16.45450 -16.14910 -15.81749 -15.54172 -15.32024 -14.99078 -14.89337 -14.76485 -14.51006 -13.87534 -13.79997 -13.73693 -13.48015 -13.40443 -12.73052 -12.69308 -12.11748 -11.98477 -11.92028 -11.77655 -11.58931 -11.32575 -11.13565 -11.00760 -10.75331 -10.75083 -10.16559 -10.11923 -9.32714 -8.28500 -6.32471 -0.16280 0.29914 1.37694 1.39332 1.47630 1.51191 1.63647 1.81081 2.18289 2.37220 2.80875 2.81545 3.07300 3.65140 3.74710 3.81560 3.89609 4.07003 4.11218 4.11342 4.19575 4.21219 4.36342 4.48615 4.53209 4.89246 4.89708 4.97066 5.04464 5.08745 5.19250 5.31460 5.37602 5.49634 5.54382 5.56694 5.65998 5.81760 6.19833 6.28272 6.40947 6.54058 6.75709 7.18980 7.25279 7.32405 8.87846 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.043683 B = 0.001868 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.822468 B =14986.204148 C =15595.975595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.532 4.532 8 H 0.037 0.963 9 C -0.012 4.012 10 C -0.102 4.102 11 C 0.127 3.873 12 N -0.714 5.714 13 C 0.555 3.445 14 O -0.586 6.586 15 C -0.189 4.189 16 C -0.025 4.025 17 C -0.208 4.208 18 C 0.151 3.849 19 O -0.311 6.311 20 C 0.028 3.972 21 C 0.516 3.484 22 N -0.826 5.826 23 O -0.584 6.584 24 C -0.165 4.165 25 C -0.039 4.039 26 H 0.266 0.734 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.413 0.587 34 H 0.139 0.861 35 H 0.172 0.828 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.423 0.577 39 H 0.414 0.586 40 H 0.147 0.853 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.212 -22.089 0.012 37.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.050 4.050 10 C -0.140 4.140 11 C 0.003 3.997 12 N -0.366 5.366 13 C 0.345 3.655 14 O -0.469 6.469 15 C -0.193 4.193 16 C -0.044 4.044 17 C -0.227 4.227 18 C 0.105 3.895 19 O -0.223 6.223 20 C -0.050 4.050 21 C 0.300 3.700 22 N -0.393 5.393 23 O -0.464 6.464 24 C -0.183 4.183 25 C -0.058 4.058 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.250 0.750 34 H 0.156 0.844 35 H 0.189 0.811 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.256 0.744 39 H 0.246 0.754 40 H 0.165 0.835 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 29.808 -21.870 0.016 36.971 hybrid contribution -0.174 0.548 -0.019 0.576 sum 29.634 -21.322 -0.003 36.508 Atomic orbital electron populations 1.70060 1.08228 1.28111 1.52693 1.25986 0.95586 1.03439 0.94206 0.85695 0.79534 0.78488 0.79173 1.19261 1.21050 1.17078 1.21476 0.91939 0.93274 1.50272 0.94428 1.19467 0.94043 0.94649 0.96875 1.21497 0.91972 0.98225 1.02266 1.21338 0.94410 0.82371 1.01588 1.45926 1.06883 1.09552 1.74205 1.18602 0.82199 0.89273 0.75425 1.90737 1.56332 1.47203 1.52586 1.19819 0.95493 0.91660 1.12295 1.21174 0.94041 0.97322 0.91912 1.21450 1.01255 0.91043 1.08904 1.19400 0.93752 0.82883 0.93464 1.86099 1.24315 1.23935 1.87991 1.22882 0.80555 0.94099 1.07416 1.20449 0.83704 0.90584 0.75241 1.43503 1.06272 1.13342 1.76151 1.90810 1.47550 1.57211 1.50807 1.20566 0.93301 0.97582 1.06879 1.21301 1.00287 0.90677 0.93513 0.92535 0.96019 0.96133 0.91617 0.91647 0.92224 0.92147 0.74975 0.84350 0.81074 0.85263 0.85277 0.74422 0.75357 0.83498 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 2 C 0.00 0.27 5.47 84.65 0.46 0.74 16 3 Si 0.95 44.41 27.47 68.60 1.88 46.29 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 7 C -0.53 -30.23 9.66 25.60 0.25 -29.98 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 11 C 0.13 4.03 5.67 86.38 0.49 4.52 16 12 N -0.71 -18.93 5.51 -466.22 -2.57 -21.50 16 13 C 0.56 15.83 7.76 86.71 0.67 16.50 16 14 O -0.59 -21.08 16.34 -3.99 -0.07 -21.14 16 15 C -0.19 -4.13 5.87 -20.08 -0.12 -4.25 16 16 C -0.03 -0.47 9.58 22.51 0.22 -0.25 16 17 C -0.21 -2.62 9.01 22.33 0.20 -2.42 16 18 C 0.15 2.39 6.70 22.63 0.15 2.54 16 19 O -0.31 -5.09 9.66 -71.20 -0.69 -5.77 16 20 C 0.03 0.18 5.21 71.24 0.37 0.55 16 21 C 0.52 5.78 8.18 87.66 0.72 6.49 16 22 N -0.83 -1.04 8.87 -173.53 -1.54 -2.58 16 23 O -0.58 -14.07 17.34 16.01 0.28 -13.79 16 24 C -0.16 -2.78 9.97 22.33 0.22 -2.56 16 25 C -0.04 -0.68 9.53 22.51 0.21 -0.47 16 26 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 28 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.41 8.51 6.49 -92.71 -0.60 7.91 16 34 H 0.14 2.55 7.64 -2.91 -0.02 2.53 16 35 H 0.17 0.70 6.28 -2.91 -0.02 0.68 16 36 H 0.13 0.03 7.64 -2.38 -0.02 0.01 16 37 H 0.13 0.03 7.67 -2.38 -0.02 0.01 16 38 H 0.42 -2.81 8.83 -92.71 -0.82 -3.63 16 39 H 0.41 0.32 8.93 -92.71 -0.83 -0.50 16 40 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.15 2.03 6.39 -2.91 -0.02 2.01 16 Total: -1.00 -86.05 353.39 0.52 -85.53 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -1.21 Total: 4.70 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 4.13 Total: -12.53 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.81 Total: -83.27 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -0.48 Total: -40.71 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -86.05 0.52 -85.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.437 kcal (2) G-P(sol) polarization free energy of solvation -86.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds