Wall clock time and date at job start Fri Apr 10 2020 17:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00290 * 2 1 4 4 O 1.20827 * 119.99586 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00086 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47132 * 185.06835 * 5 3 2 7 7 C 1.36933 * 120.00336 * 89.31703 * 6 5 3 8 8 H 1.08001 * 120.00255 * 177.15674 * 7 6 5 9 9 C 1.38815 * 119.99815 * 357.15607 * 7 6 5 10 10 N 1.31617 * 119.99885 * 329.40124 * 9 7 6 11 11 Si 1.86795 * 119.99992 * 149.40488 * 9 7 6 12 12 H 1.48503 * 109.46911 * 94.99914 * 11 9 7 13 13 H 1.48493 * 109.47385 * 214.99666 * 11 9 7 14 14 H 1.48494 * 109.47252 * 334.99930 * 11 9 7 15 15 C 1.46509 * 119.99519 * 269.31999 * 6 5 3 16 16 C 1.50697 * 109.46777 * 265.09086 * 15 6 5 17 17 O 1.21290 * 120.00578 * 5.07351 * 16 15 6 18 18 N 1.34788 * 119.99813 * 185.08074 * 16 15 6 19 19 C 1.39921 * 119.99833 * 184.90242 * 18 16 15 20 20 C 1.38872 * 120.07149 * 324.72771 * 19 18 16 21 21 C 1.38111 * 119.93175 * 179.72963 * 20 19 18 22 22 C 1.38278 * 120.06882 * 0.22977 * 21 20 19 23 23 C 1.50702 * 119.93191 * 180.02562 * 22 21 20 24 24 C 1.38287 * 120.14349 * 0.04476 * 22 21 20 25 25 C 1.38113 * 120.06396 * 359.95792 * 24 22 21 26 26 H 1.09001 * 109.47182 * 299.99789 * 1 2 3 27 27 H 1.09001 * 109.47458 * 59.99021 * 1 2 3 28 28 H 1.09001 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47153 * 65.06897 * 5 3 2 30 30 H 1.08992 * 109.47482 * 305.06548 * 5 3 2 31 31 H 0.96998 * 119.99992 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.46700 * 145.09273 * 15 6 5 33 33 H 1.08998 * 109.47433 * 25.09335 * 15 6 5 34 34 H 0.96996 * 119.99407 * 4.89248 * 18 16 15 35 35 H 1.08002 * 120.03808 * 0.02562 * 20 19 18 36 36 H 1.08001 * 119.96876 * 180.25425 * 21 20 19 37 37 H 1.08995 * 109.47277 * 89.99754 * 23 22 21 38 38 H 1.08997 * 109.47577 * 210.00457 * 23 22 21 39 39 H 1.09001 * 109.46446 * 329.99949 * 23 22 21 40 40 H 1.07996 * 119.96397 * 179.97438 * 24 22 21 41 41 H 1.08007 * 120.02847 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9821 2.6743 0.1216 7 6 4.1688 3.2275 1.3602 8 1 4.5195 4.2451 1.4498 9 6 3.9073 2.4805 2.5006 10 7 2.9736 1.5530 2.4799 11 14 4.8804 2.7916 4.0644 12 1 4.1290 3.7297 4.9365 13 1 5.0884 1.5081 4.7816 14 1 6.1971 3.3844 3.7184 15 6 4.1980 3.4819 -1.0816 16 6 5.6589 3.4531 -1.4503 17 8 6.4270 2.7479 -0.8308 18 7 6.1120 4.2113 -2.4685 19 6 7.4462 4.1084 -2.8775 20 6 8.4451 3.8768 -1.9410 21 6 9.7604 3.7701 -2.3486 22 6 10.0836 3.8985 -3.6869 23 6 11.5198 3.7810 -4.1283 24 6 9.0919 4.1348 -4.6212 25 6 7.7748 4.2425 -4.2200 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.9514 0.8614 -0.9327 30 1 3.9604 0.7041 0.8402 31 1 2.7912 1.0307 3.2767 32 1 3.8921 4.5102 -0.8887 33 1 3.6079 3.0753 -1.9029 34 1 5.5131 4.8280 -2.9177 35 1 8.1933 3.7753 -0.8957 36 1 10.5373 3.5859 -1.6213 37 1 11.7444 2.7402 -4.3611 38 1 11.6787 4.3943 -5.0152 39 1 12.1751 4.1238 -3.3275 40 1 9.3477 4.2350 -5.6657 41 1 7.0006 4.4267 -4.9503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174566817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:54 Heat of formation + Delta-G solvation = -58.707122 kcal Electronic energy + Delta-G solvation = -24999.195830 eV Core-core repulsion = 21266.697513 eV Total energy + Delta-G solvation = -3732.498317 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.12812 -39.03002 -38.29087 -35.88496 -34.75246 -34.39863 -31.78399 -31.20801 -30.79596 -28.65964 -27.29171 -26.03664 -25.67665 -22.88853 -22.53291 -21.18109 -20.09020 -19.64652 -17.62722 -16.93431 -16.66795 -16.16897 -15.54915 -15.32301 -15.16003 -15.10617 -14.71733 -14.26108 -14.01474 -13.76942 -13.53045 -13.29816 -13.19229 -13.09967 -12.38132 -12.31543 -12.24316 -12.04829 -11.55179 -11.48688 -11.16018 -11.10478 -11.02069 -10.82431 -10.51556 -10.22456 -9.95315 -9.87710 -9.68143 -9.48932 -9.12593 -8.78521 -8.45275 -7.79133 -7.25869 -6.02126 -3.20071 1.40803 1.53870 3.18964 3.32175 3.41331 3.46468 3.53041 3.78572 3.93610 4.02088 4.45713 4.87292 4.94571 5.11407 5.15860 5.24481 5.29210 5.45826 5.52148 5.53331 5.72912 5.77793 5.83182 5.84813 5.91075 5.94373 6.06293 6.12825 6.16078 6.24790 6.43119 6.55358 6.61169 6.71108 6.77580 7.06649 7.26048 7.59254 7.71583 7.77931 8.04462 8.72353 8.91865 9.28663 9.62344 10.00743 11.10331 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.003800 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.245921 B = 7366.799042 C = 8564.791411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.377 6.377 3 C 0.470 3.530 4 O -0.517 6.517 5 C 0.185 3.815 6 N -0.544 5.544 7 C -0.254 4.254 8 H 0.082 0.918 9 C 0.009 3.991 10 N -0.895 5.895 11 Si 0.899 3.101 12 H -0.290 1.290 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.137 3.863 16 C 0.478 3.522 17 O -0.497 6.497 18 N -0.688 5.688 19 C 0.153 3.847 20 C -0.119 4.119 21 C -0.102 4.102 22 C -0.116 4.116 23 C -0.109 4.109 24 C -0.105 4.105 25 C -0.152 4.152 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.260 0.740 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.405 0.595 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.352 2.612 -13.747 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.294 6.294 3 C 0.311 3.689 4 O -0.403 6.403 5 C 0.056 3.944 6 N -0.261 5.261 7 C -0.382 4.382 8 H 0.100 0.900 9 C -0.189 4.189 10 N -0.539 5.539 11 Si 0.728 3.272 12 H -0.217 1.217 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.004 3.996 16 C 0.264 3.736 17 O -0.368 6.368 18 N -0.336 5.336 19 C 0.058 3.942 20 C -0.139 4.139 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.165 4.165 24 C -0.124 4.124 25 C -0.172 4.172 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.240 0.760 35 H 0.160 0.840 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.516 2.249 -13.048 15.225 hybrid contribution -0.274 0.520 0.746 0.950 sum 7.242 2.769 -12.302 14.541 Atomic orbital electron populations 1.22875 0.79753 1.01424 1.01233 1.86546 1.20981 1.36408 1.85438 1.25539 0.93432 0.80202 0.69765 1.90457 1.66906 1.36582 1.46367 1.20555 0.85278 0.86869 1.01676 1.43540 1.73805 1.07446 1.01271 1.19124 1.38790 0.98584 0.81672 0.90031 1.24654 0.97627 0.98646 0.97958 1.69961 1.27776 1.26660 1.29549 0.86326 0.80912 0.77243 0.82724 1.21711 1.21303 1.20291 1.20649 0.89158 0.98402 0.91366 1.23440 0.94005 0.78230 0.77969 1.90647 1.57700 1.39279 1.49154 1.44066 1.09177 1.43396 1.36937 1.17902 0.84598 0.99260 0.92419 1.21419 0.91459 1.00250 1.00815 1.20950 0.96112 0.99854 0.95184 1.19835 0.95756 1.02441 0.93655 1.20717 0.92553 1.01902 1.01365 1.20728 0.92065 1.00734 0.98839 1.20877 0.96988 1.05556 0.93818 0.92781 0.93645 0.90057 0.92643 0.86197 0.92993 0.89972 0.90424 0.75959 0.84040 0.86126 0.91591 0.91957 0.91845 0.86236 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.81 16 2 O -0.38 -8.21 10.56 -39.26 -0.41 -8.62 16 3 C 0.47 11.38 6.14 36.00 0.22 11.60 16 4 O -0.52 -13.77 16.19 -18.75 -0.30 -14.08 16 5 C 0.19 4.40 5.53 -5.19 -0.03 4.37 16 6 N -0.54 -13.15 1.53 -175.98 -0.27 -13.42 16 7 C -0.25 -6.83 9.64 -15.06 -0.15 -6.97 16 8 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.01 0.25 4.83 -17.43 -0.08 0.17 16 10 N -0.90 -25.19 9.41 55.49 0.52 -24.67 16 11 Si 0.90 21.87 29.65 -169.99 -5.04 16.83 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.14 2.60 6.16 -5.19 -0.03 2.57 16 16 C 0.48 8.80 7.71 -10.98 -0.08 8.71 16 17 O -0.50 -11.16 13.86 5.55 0.08 -11.08 16 18 N -0.69 -9.83 5.34 -9.86 -0.05 -9.89 16 19 C 0.15 2.26 6.30 -83.70 -0.53 1.73 16 20 C -0.12 -1.91 8.70 -39.39 -0.34 -2.25 16 21 C -0.10 -1.39 9.69 -39.61 -0.38 -1.77 16 22 C -0.12 -1.37 5.88 -104.59 -0.62 -1.98 16 23 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 24 C -0.11 -1.18 9.69 -39.61 -0.38 -1.57 16 25 C -0.15 -1.84 9.97 -39.40 -0.39 -2.23 16 26 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 27 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 30 H 0.12 3.13 6.13 -51.93 -0.32 2.81 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 33 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 34 H 0.41 4.30 8.82 -40.82 -0.36 3.94 16 35 H 0.14 2.63 6.23 -52.49 -0.33 2.30 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.45 8.08 -51.93 -0.42 0.04 16 39 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -34.00 353.21 -7.14 -41.14 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.61 Total: 4.87 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -1.37 Total: 13.59 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.20 Total: -47.98 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.64 Total: -33.78 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.04 Total: 16.83 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.00 -7.14 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174566817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.564 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds