Wall clock time and date at job start Fri Apr 10 2020 17:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00290 * 2 1 4 4 O 1.20827 * 119.99586 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00086 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47132 * 185.06835 * 5 3 2 7 7 C 1.36933 * 120.00336 * 89.31703 * 6 5 3 8 8 H 1.08001 * 120.00255 * 177.15674 * 7 6 5 9 9 C 1.38815 * 119.99815 * 357.15607 * 7 6 5 10 10 N 1.31617 * 119.99885 * 329.40124 * 9 7 6 11 11 Si 1.86795 * 119.99992 * 149.40488 * 9 7 6 12 12 H 1.48503 * 109.46911 * 94.99914 * 11 9 7 13 13 H 1.48493 * 109.47385 * 214.99666 * 11 9 7 14 14 H 1.48494 * 109.47252 * 334.99930 * 11 9 7 15 15 C 1.46509 * 119.99519 * 269.31999 * 6 5 3 16 16 C 1.50697 * 109.46777 * 265.09086 * 15 6 5 17 17 O 1.21290 * 120.00578 * 5.07351 * 16 15 6 18 18 N 1.34788 * 119.99813 * 185.08074 * 16 15 6 19 19 C 1.39921 * 119.99833 * 184.90242 * 18 16 15 20 20 C 1.38872 * 120.07149 * 324.72771 * 19 18 16 21 21 C 1.38111 * 119.93175 * 179.72963 * 20 19 18 22 22 C 1.38278 * 120.06882 * 0.22977 * 21 20 19 23 23 C 1.50702 * 119.93191 * 180.02562 * 22 21 20 24 24 C 1.38287 * 120.14349 * 0.04476 * 22 21 20 25 25 C 1.38113 * 120.06396 * 359.95792 * 24 22 21 26 26 H 1.09001 * 109.47182 * 299.99789 * 1 2 3 27 27 H 1.09001 * 109.47458 * 59.99021 * 1 2 3 28 28 H 1.09001 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47153 * 65.06897 * 5 3 2 30 30 H 1.08992 * 109.47482 * 305.06548 * 5 3 2 31 31 H 0.96998 * 119.99992 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.46700 * 145.09273 * 15 6 5 33 33 H 1.08998 * 109.47433 * 25.09335 * 15 6 5 34 34 H 0.96996 * 119.99407 * 4.89248 * 18 16 15 35 35 H 1.08002 * 120.03808 * 0.02562 * 20 19 18 36 36 H 1.08001 * 119.96876 * 180.25425 * 21 20 19 37 37 H 1.08995 * 109.47277 * 89.99754 * 23 22 21 38 38 H 1.08997 * 109.47577 * 210.00457 * 23 22 21 39 39 H 1.09001 * 109.46446 * 329.99949 * 23 22 21 40 40 H 1.07996 * 119.96397 * 179.97438 * 24 22 21 41 41 H 1.08007 * 120.02847 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9821 2.6743 0.1216 7 6 4.1688 3.2275 1.3602 8 1 4.5195 4.2451 1.4498 9 6 3.9073 2.4805 2.5006 10 7 2.9736 1.5530 2.4799 11 14 4.8804 2.7916 4.0644 12 1 4.1290 3.7297 4.9365 13 1 5.0884 1.5081 4.7816 14 1 6.1971 3.3844 3.7184 15 6 4.1980 3.4819 -1.0816 16 6 5.6589 3.4531 -1.4503 17 8 6.4270 2.7479 -0.8308 18 7 6.1120 4.2113 -2.4685 19 6 7.4462 4.1084 -2.8775 20 6 8.4451 3.8768 -1.9410 21 6 9.7604 3.7701 -2.3486 22 6 10.0836 3.8985 -3.6869 23 6 11.5198 3.7810 -4.1283 24 6 9.0919 4.1348 -4.6212 25 6 7.7748 4.2425 -4.2200 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.9514 0.8614 -0.9327 30 1 3.9604 0.7041 0.8402 31 1 2.7912 1.0307 3.2767 32 1 3.8921 4.5102 -0.8887 33 1 3.6079 3.0753 -1.9029 34 1 5.5131 4.8280 -2.9177 35 1 8.1933 3.7753 -0.8957 36 1 10.5373 3.5859 -1.6213 37 1 11.7444 2.7402 -4.3611 38 1 11.6787 4.3943 -5.0152 39 1 12.1751 4.1238 -3.3275 40 1 9.3477 4.2350 -5.6657 41 1 7.0006 4.4267 -4.9503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174566817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:54 Heat of formation + Delta-G solvation = -79.405061 kcal Electronic energy + Delta-G solvation = -25000.093360 eV Core-core repulsion = 21266.697513 eV Total energy + Delta-G solvation = -3733.395847 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39625 -40.81341 -39.52817 -37.62244 -36.46862 -35.82686 -33.53291 -32.43652 -31.80397 -30.32288 -28.81811 -27.68796 -26.86516 -24.35495 -23.82020 -22.36882 -21.70491 -21.15569 -19.09687 -18.60189 -18.26663 -17.75426 -17.30530 -16.86749 -16.56281 -16.49412 -16.23019 -15.65797 -15.56044 -14.95827 -14.94105 -14.54655 -14.46131 -14.27499 -14.00540 -13.93183 -13.47929 -13.18133 -12.91094 -12.89537 -12.72123 -12.63695 -12.47660 -12.37606 -12.15814 -11.98157 -11.95189 -11.40834 -11.30530 -11.04590 -10.75837 -10.42083 -9.81418 -9.17310 -8.86698 -8.07346 -5.24425 0.37195 0.52216 1.40646 1.46670 1.56931 1.79597 1.87004 2.09053 2.40197 2.51117 2.90819 3.17661 3.45981 3.93731 4.08466 4.12452 4.19918 4.36128 4.43183 4.45085 4.50333 4.50852 4.55333 4.56696 4.71284 4.74678 4.90570 4.90921 4.92569 5.12884 5.15573 5.21043 5.45231 5.49704 5.56377 5.68721 5.75728 5.89031 6.06728 6.19773 6.60254 6.92172 7.36546 7.42064 7.69071 8.03219 9.03807 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.003800 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.245921 B = 7366.799042 C = 8564.791411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.382 6.382 3 C 0.475 3.525 4 O -0.547 6.547 5 C 0.187 3.813 6 N -0.561 5.561 7 C -0.257 4.257 8 H 0.077 0.923 9 C -0.038 4.038 10 N -0.917 5.917 11 Si 0.953 3.047 12 H -0.289 1.289 13 H -0.288 1.288 14 H -0.282 1.282 15 C 0.135 3.865 16 C 0.485 3.515 17 O -0.544 6.544 18 N -0.668 5.668 19 C 0.127 3.873 20 C -0.147 4.147 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.108 4.108 24 C -0.103 4.103 25 C -0.142 4.142 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.254 0.746 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.424 0.576 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.156 0.844 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.114 3.017 -16.643 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.299 6.299 3 C 0.317 3.683 4 O -0.435 6.435 5 C 0.057 3.943 6 N -0.279 5.279 7 C -0.386 4.386 8 H 0.095 0.905 9 C -0.234 4.234 10 N -0.564 5.564 11 Si 0.782 3.218 12 H -0.216 1.216 13 H -0.214 1.214 14 H -0.208 1.208 15 C 0.004 3.996 16 C 0.271 3.729 17 O -0.419 6.419 18 N -0.317 5.317 19 C 0.033 3.967 20 C -0.168 4.168 21 C -0.136 4.136 22 C -0.113 4.113 23 C -0.164 4.164 24 C -0.121 4.121 25 C -0.162 4.162 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.143 0.857 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.263 0.737 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.173 0.827 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.287 2.690 -16.007 18.224 hybrid contribution -0.456 0.414 1.490 1.612 sum 7.831 3.104 -14.516 16.784 Atomic orbital electron populations 1.23204 0.77191 1.04274 1.00970 1.86498 1.23456 1.35041 1.84878 1.25483 0.93587 0.80329 0.68899 1.90428 1.67588 1.37607 1.47924 1.20423 0.85334 0.86789 1.01706 1.43617 1.74436 1.07931 1.01920 1.19320 1.37601 0.98454 0.83191 0.90530 1.25222 0.98550 0.99314 1.00264 1.70062 1.28891 1.27743 1.29663 0.85485 0.79392 0.76762 0.80159 1.21571 1.21448 1.20815 1.20859 0.89798 0.98510 0.90427 1.22990 0.93293 0.78193 0.78418 1.90646 1.58556 1.41621 1.51117 1.43651 1.09699 1.42642 1.35679 1.18068 0.83955 1.01173 0.93553 1.21280 0.93310 1.02687 0.99513 1.21107 0.95295 1.00435 0.96725 1.20247 0.97813 1.00523 0.92754 1.20786 0.90338 1.02923 1.02391 1.21204 0.91402 0.99058 1.00483 1.21201 0.98389 1.03781 0.92820 0.94571 0.92397 0.85690 0.90047 0.88983 0.93654 0.88827 0.87899 0.73721 0.87810 0.85542 0.90727 0.89845 0.91354 0.82664 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 10.56 113.37 1.20 2.47 16 2 O -0.38 -16.45 10.56 -51.42 -0.54 -16.99 16 3 C 0.47 23.07 6.14 71.23 0.44 23.50 16 4 O -0.55 -29.25 16.19 21.96 0.36 -28.89 16 5 C 0.19 8.98 5.53 85.63 0.47 9.46 16 6 N -0.56 -27.52 1.53 -710.68 -1.09 -28.61 16 7 C -0.26 -14.13 9.64 84.03 0.81 -13.32 16 8 H 0.08 4.17 7.99 -2.91 -0.02 4.15 16 9 C -0.04 -2.14 4.83 84.86 0.41 -1.73 16 10 N -0.92 -52.95 9.41 21.65 0.20 -52.75 16 11 Si 0.95 46.41 29.65 68.60 2.03 48.45 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 15 C 0.13 5.07 6.16 85.63 0.53 5.59 16 16 C 0.48 17.94 7.71 87.65 0.68 18.61 16 17 O -0.54 -25.35 13.86 -3.06 -0.04 -25.39 16 18 N -0.67 -18.50 5.34 -303.50 -1.62 -20.12 16 19 C 0.13 3.63 6.30 38.15 0.24 3.87 16 20 C -0.15 -4.86 8.70 22.39 0.19 -4.67 16 21 C -0.12 -3.15 9.69 22.25 0.22 -2.94 16 22 C -0.11 -2.38 5.88 -19.84 -0.12 -2.50 16 23 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16 24 C -0.10 -1.94 9.69 22.25 0.22 -1.72 16 25 C -0.14 -3.00 9.97 22.39 0.22 -2.78 16 26 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 27 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 28 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.08 3.39 8.07 -2.39 -0.02 3.38 16 30 H 0.09 4.97 6.13 -2.39 -0.01 4.96 16 31 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.09 3.29 8.08 -2.39 -0.02 3.27 16 33 H 0.10 3.32 8.03 -2.39 -0.02 3.30 16 34 H 0.42 8.17 8.82 -92.71 -0.82 7.35 16 35 H 0.10 4.18 6.23 -2.91 -0.02 4.16 16 36 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 39 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 40 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -76.39 353.21 5.74 -70.64 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.23 Total: 20.62 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 6.22 Total: 33.04 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -2.51 Total: -101.48 kcal Atomic # 8 Polarization: -71.04 SS G_CDS: -0.23 Total: -71.27 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.45 kcal Total: -76.39 5.74 -70.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174566817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.764 kcal (2) G-P(sol) polarization free energy of solvation -76.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds