Wall clock time and date at job start Fri Apr 10 2020 17:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86795 * 119.99956 * 2 1 4 4 H 1.48498 * 109.47262 * 269.99460 * 3 2 1 5 5 H 1.48504 * 109.47453 * 29.99852 * 3 2 1 6 6 H 1.48505 * 109.47126 * 150.00043 * 3 2 1 7 7 C 1.38945 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00154 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00264 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99994 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99976 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47087 * 180.02562 * 12 10 9 14 14 C 1.39935 * 119.99981 * 179.97438 * 13 12 10 15 15 C 1.38862 * 120.02081 * 179.97438 * 14 13 12 16 16 C 1.38104 * 119.98350 * 180.02562 * 15 14 13 17 17 C 1.38705 * 120.01851 * 0.02562 * 16 15 14 18 18 O 1.35995 * 119.98159 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00020 * 5.29172 * 18 17 16 20 20 H 1.08994 * 110.91251 * 38.75019 * 19 18 17 21 21 C 1.55302 * 110.84920 * 162.33787 * 19 18 17 22 22 C 1.54951 * 100.94559 * 152.32302 * 21 19 18 23 23 O 1.43652 * 105.13108 * 323.55765 * 22 21 19 24 24 C 1.43232 * 109.97555 * 24.42144 * 23 22 21 25 25 C 1.38696 * 120.03729 * 0.24340 * 17 16 15 26 26 C 1.38119 * 120.02056 * 359.47850 * 25 17 16 27 27 H 0.97001 * 120.00354 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99651 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47037 * 60.00149 * 12 10 9 30 30 H 1.08995 * 109.46841 * 299.99747 * 12 10 9 31 31 H 0.97000 * 119.99711 * 359.97438 * 13 12 10 32 32 H 1.07996 * 120.00665 * 0.04227 * 15 14 13 33 33 H 1.08002 * 119.99305 * 180.02562 * 16 15 14 34 34 H 1.09000 * 111.12602 * 34.40504 * 21 19 18 35 35 H 1.08996 * 111.12754 * 270.23902 * 21 19 18 36 36 H 1.08995 * 110.31198 * 204.64647 * 22 21 19 37 37 H 1.09000 * 110.39280 * 82.51038 * 22 21 19 38 38 H 1.09001 * 109.82771 * 117.80180 * 24 23 22 39 39 H 1.08998 * 109.83741 * 238.77621 * 24 23 22 40 40 H 1.08005 * 119.99365 * 179.72130 * 25 17 16 41 41 H 1.07998 * 120.00689 * 180.25583 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4471 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0490 -3.7519 0.0005 14 6 7.4248 -4.0076 -0.0002 15 6 7.8881 -5.3167 -0.0003 16 6 9.2460 -5.5682 -0.0004 17 6 10.1471 -4.5136 0.0001 18 8 11.4841 -4.7621 0.0005 19 6 11.8903 -6.1271 -0.1170 20 1 11.2507 -6.6645 -0.8171 21 6 13.3806 -6.2257 -0.5425 22 6 13.7743 -7.5897 0.0784 23 8 13.0577 -7.6565 1.3217 24 6 11.8972 -6.8190 1.2632 25 6 9.6852 -3.2058 0.0058 26 6 8.3274 -2.9524 0.0001 27 1 -0.4851 0.8400 -0.0004 28 1 3.8648 -0.3634 0.0007 29 1 5.9240 -1.8568 0.8911 30 1 5.9239 -1.8568 -0.8889 31 1 5.4186 -4.4891 0.0005 32 1 7.1867 -6.1378 -0.0005 33 1 9.6066 -6.5862 -0.0008 34 1 13.9668 -5.4140 -0.1114 35 1 13.4789 -6.2452 -1.6278 36 1 14.8486 -7.6274 0.2586 37 1 13.4722 -8.4066 -0.5768 38 1 10.9981 -7.4246 1.3777 39 1 11.9422 -6.0689 2.0527 40 1 10.3874 -2.3852 0.0107 41 1 7.9681 -1.9340 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175134009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:01 Heat of formation + Delta-G solvation = -80.297554 kcal Electronic energy + Delta-G solvation = -23725.214995 eV Core-core repulsion = 19991.780446 eV Total energy + Delta-G solvation = -3733.434548 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.68240 -39.40404 -38.63128 -37.50151 -34.72371 -33.94271 -32.01622 -31.82149 -31.08063 -29.36645 -29.08540 -26.57709 -24.37756 -23.20837 -23.05369 -22.10125 -20.88762 -19.56858 -18.67251 -18.47295 -17.31959 -17.09317 -16.73153 -15.78180 -15.41489 -15.38707 -15.06519 -14.94248 -14.58944 -14.38670 -14.24396 -13.73120 -13.39164 -13.36805 -13.11354 -13.02044 -12.76371 -12.54245 -12.38056 -12.12729 -12.03886 -11.98158 -11.37129 -11.30336 -11.07817 -10.76767 -10.68318 -10.09371 -10.00113 -9.73469 -9.48989 -9.03267 -8.79338 -8.33815 -7.04241 -6.43436 -3.96258 1.32359 1.63489 2.86794 2.94861 2.99540 3.08544 3.48354 3.52671 3.56259 3.81426 3.93224 3.99984 4.36434 4.42714 4.52648 4.61409 4.73673 4.80949 4.86733 5.10422 5.12819 5.20330 5.22833 5.30161 5.37000 5.43362 5.47691 5.54117 5.64259 5.72435 5.72950 5.97273 6.02428 6.33132 6.37881 6.46733 6.63196 7.24573 7.39671 7.52278 7.93790 8.04587 8.42577 8.79239 9.26713 9.60910 10.68864 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.043168 B = 0.002139 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.469573 B =13088.231512 C =13554.039524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.578 5.578 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.111 3.889 13 N -0.727 5.727 14 C 0.201 3.799 15 C -0.161 4.161 16 C -0.154 4.154 17 C 0.051 3.949 18 O -0.304 6.304 19 C 0.055 3.945 20 H 0.089 0.911 21 C -0.150 4.150 22 C 0.051 3.949 23 O -0.379 6.379 24 C 0.027 3.973 25 C -0.095 4.095 26 C -0.167 4.167 27 H 0.276 0.724 28 H 0.373 0.627 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.412 0.588 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.546 -8.402 -1.266 27.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.216 5.216 10 C 0.225 3.775 11 O -0.460 6.460 12 C -0.018 4.018 13 N -0.359 5.359 14 C 0.096 3.904 15 C -0.184 4.184 16 C -0.173 4.173 17 C 0.006 3.994 18 O -0.218 6.218 19 C -0.002 4.002 20 H 0.106 0.894 21 C -0.188 4.188 22 C -0.025 4.025 23 O -0.298 6.298 24 C -0.049 4.049 25 C -0.114 4.114 26 C -0.190 4.190 27 H 0.086 0.914 28 H 0.206 0.794 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.145 0.855 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 26.038 -8.756 -1.072 27.492 hybrid contribution 0.018 1.104 -0.201 1.123 sum 26.056 -7.652 -1.273 27.186 Atomic orbital electron populations 1.69616 1.05711 1.27812 1.48174 1.25073 0.95547 0.98170 0.97196 0.86657 0.79846 0.83785 0.79068 1.19416 1.19969 1.19319 1.19437 0.78995 0.96792 1.48677 0.86146 1.42131 1.07698 1.06079 1.65667 1.19642 0.88123 0.84836 0.84936 1.90546 1.69189 1.30981 1.55319 1.20949 0.94131 0.84748 1.01924 1.44475 1.02926 1.07388 1.81151 1.17819 0.84147 0.93276 0.95168 1.20382 0.95047 0.94994 1.07963 1.20937 0.93185 0.97877 1.05300 1.18656 0.81808 0.93985 1.04998 1.86096 1.20831 1.25636 1.89284 1.23845 0.96706 0.82811 0.96869 0.89365 1.23302 0.94006 0.98889 1.02586 1.23369 0.97725 0.95773 0.85642 1.88449 1.38728 1.67381 1.35257 1.23757 0.89011 0.94315 0.97867 1.20117 0.94936 0.93933 1.02398 1.20513 0.91672 0.98367 1.08419 0.91372 0.79350 0.90612 0.90622 0.74971 0.85775 0.85935 0.88907 0.88898 0.89003 0.91665 0.90614 0.89863 0.85480 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.83 13.96 55.50 0.77 -24.06 16 2 C 0.04 1.18 5.50 -17.47 -0.10 1.08 16 3 Si 0.88 18.63 27.74 -169.99 -4.71 13.91 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.11 6.52 56.52 0.37 -4.75 16 7 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 9 N -0.58 -13.16 5.09 -10.96 -0.06 -13.22 16 10 C 0.44 9.49 7.85 -10.99 -0.09 9.40 16 11 O -0.58 -14.72 15.24 5.55 0.08 -14.63 16 12 C 0.11 1.76 5.39 -5.19 -0.03 1.74 16 13 N -0.73 -11.27 5.71 -59.76 -0.34 -11.61 16 14 C 0.20 2.75 6.66 -83.70 -0.56 2.20 16 15 C -0.16 -2.00 9.89 -39.40 -0.39 -2.39 16 16 C -0.15 -1.72 8.77 -39.46 -0.35 -2.06 16 17 C 0.05 0.60 6.63 -39.24 -0.26 0.34 16 18 O -0.30 -3.30 9.89 -19.73 -0.20 -3.49 16 19 C 0.06 0.46 2.80 -24.78 -0.07 0.39 16 20 H 0.09 0.66 6.63 -51.93 -0.34 0.32 16 21 C -0.15 -0.95 6.89 -24.48 -0.17 -1.12 16 22 C 0.05 0.32 7.78 38.19 0.30 0.62 16 23 O -0.38 -3.62 11.36 -35.23 -0.40 -4.02 16 24 C 0.03 0.24 7.06 37.89 0.27 0.51 16 25 C -0.09 -1.11 9.98 -39.46 -0.39 -1.50 16 26 C -0.17 -2.08 9.31 -39.39 -0.37 -2.44 16 27 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.37 7.36 5.76 -40.82 -0.24 7.13 16 29 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 30 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 31 H 0.41 6.87 7.45 -40.82 -0.30 6.57 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.12 1.11 5.32 -52.49 -0.28 0.83 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.61 7.44 -51.93 -0.39 0.22 16 39 H 0.08 0.79 8.05 -51.93 -0.42 0.38 16 40 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 41 H 0.13 1.44 6.73 -52.49 -0.35 1.08 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -31.92 342.03 -7.28 -39.20 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -5.24 Total: 14.68 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -2.35 Total: -1.91 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.38 Total: -48.89 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.51 Total: -22.15 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.71 Total: 13.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.92 -7.28 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175134009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.099 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds