Wall clock time and date at job start Fri Apr 10 2020 17:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86795 * 119.99956 * 2 1 4 4 H 1.48498 * 109.47262 * 269.99460 * 3 2 1 5 5 H 1.48504 * 109.47453 * 29.99852 * 3 2 1 6 6 H 1.48505 * 109.47126 * 150.00043 * 3 2 1 7 7 C 1.38945 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00154 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00264 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99994 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99976 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47087 * 180.02562 * 12 10 9 14 14 C 1.39935 * 119.99981 * 179.97438 * 13 12 10 15 15 C 1.38862 * 120.02081 * 179.97438 * 14 13 12 16 16 C 1.38104 * 119.98350 * 180.02562 * 15 14 13 17 17 C 1.38705 * 120.01851 * 0.02562 * 16 15 14 18 18 O 1.35995 * 119.98159 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00020 * 5.29172 * 18 17 16 20 20 H 1.08994 * 110.91251 * 38.75019 * 19 18 17 21 21 C 1.55302 * 110.84920 * 162.33787 * 19 18 17 22 22 C 1.54951 * 100.94559 * 152.32302 * 21 19 18 23 23 O 1.43652 * 105.13108 * 323.55765 * 22 21 19 24 24 C 1.43232 * 109.97555 * 24.42144 * 23 22 21 25 25 C 1.38696 * 120.03729 * 0.24340 * 17 16 15 26 26 C 1.38119 * 120.02056 * 359.47850 * 25 17 16 27 27 H 0.97001 * 120.00354 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99651 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47037 * 60.00149 * 12 10 9 30 30 H 1.08995 * 109.46841 * 299.99747 * 12 10 9 31 31 H 0.97000 * 119.99711 * 359.97438 * 13 12 10 32 32 H 1.07996 * 120.00665 * 0.04227 * 15 14 13 33 33 H 1.08002 * 119.99305 * 180.02562 * 16 15 14 34 34 H 1.09000 * 111.12602 * 34.40504 * 21 19 18 35 35 H 1.08996 * 111.12754 * 270.23902 * 21 19 18 36 36 H 1.08995 * 110.31198 * 204.64647 * 22 21 19 37 37 H 1.09000 * 110.39280 * 82.51038 * 22 21 19 38 38 H 1.09001 * 109.82771 * 117.80180 * 24 23 22 39 39 H 1.08998 * 109.83741 * 238.77621 * 24 23 22 40 40 H 1.08005 * 119.99365 * 179.72130 * 25 17 16 41 41 H 1.07998 * 120.00689 * 180.25583 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4471 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0490 -3.7519 0.0005 14 6 7.4248 -4.0076 -0.0002 15 6 7.8881 -5.3167 -0.0003 16 6 9.2460 -5.5682 -0.0004 17 6 10.1471 -4.5136 0.0001 18 8 11.4841 -4.7621 0.0005 19 6 11.8903 -6.1271 -0.1170 20 1 11.2507 -6.6645 -0.8171 21 6 13.3806 -6.2257 -0.5425 22 6 13.7743 -7.5897 0.0784 23 8 13.0577 -7.6565 1.3217 24 6 11.8972 -6.8190 1.2632 25 6 9.6852 -3.2058 0.0058 26 6 8.3274 -2.9524 0.0001 27 1 -0.4851 0.8400 -0.0004 28 1 3.8648 -0.3634 0.0007 29 1 5.9240 -1.8568 0.8911 30 1 5.9239 -1.8568 -0.8889 31 1 5.4186 -4.4891 0.0005 32 1 7.1867 -6.1378 -0.0005 33 1 9.6066 -6.5862 -0.0008 34 1 13.9668 -5.4140 -0.1114 35 1 13.4789 -6.2452 -1.6278 36 1 14.8486 -7.6274 0.2586 37 1 13.4722 -8.4066 -0.5768 38 1 10.9981 -7.4246 1.3777 39 1 11.9422 -6.0689 2.0527 40 1 10.3874 -2.3852 0.0107 41 1 7.9681 -1.9340 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175134009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:00 Heat of formation + Delta-G solvation = -104.060192 kcal Electronic energy + Delta-G solvation = -23726.245420 eV Core-core repulsion = 19991.780446 eV Total energy + Delta-G solvation = -3734.464974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.45357 -40.59650 -39.90577 -38.44157 -36.27357 -35.42809 -33.83570 -32.67710 -31.91633 -30.34644 -29.90231 -27.92855 -25.98361 -24.08506 -23.76247 -22.84652 -21.84163 -21.28771 -20.36447 -19.35314 -18.56297 -17.75339 -17.56043 -17.19984 -16.68322 -16.45719 -16.41018 -16.05975 -15.70089 -15.29000 -15.21650 -14.92079 -14.47193 -14.42133 -14.33219 -14.18751 -14.15095 -13.70214 -13.42683 -13.27602 -13.04881 -12.90554 -12.51927 -12.44712 -12.02071 -11.99317 -11.87264 -11.57416 -11.54712 -10.63045 -10.61577 -10.46433 -10.31670 -9.92592 -8.45460 -8.05180 -6.08110 0.42681 0.69997 1.30715 1.34885 1.44959 1.82297 2.13458 2.21081 2.34188 2.89553 2.93763 2.98659 3.10902 3.32913 3.76683 3.80874 3.94886 4.01181 4.02643 4.11486 4.24951 4.33493 4.36716 4.46987 4.50101 4.62061 4.67761 4.75912 4.80659 4.87715 4.98067 5.09937 5.15030 5.40807 5.46215 5.47626 5.73331 5.87111 5.89581 6.29435 6.50564 6.58084 6.78228 6.81543 7.30150 7.81823 8.71393 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.043168 B = 0.002139 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.469573 B =13088.231512 C =13554.039524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.964 3.036 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.227 1.227 7 C -0.333 4.333 8 H 0.057 0.943 9 N -0.578 5.578 10 C 0.441 3.559 11 O -0.622 6.622 12 C 0.126 3.874 13 N -0.741 5.741 14 C 0.180 3.820 15 C -0.169 4.169 16 C -0.154 4.154 17 C 0.050 3.950 18 O -0.312 6.312 19 C 0.049 3.951 20 H 0.099 0.901 21 C -0.145 4.145 22 C 0.047 3.953 23 O -0.402 6.402 24 C 0.028 3.972 25 C -0.102 4.102 26 C -0.167 4.167 27 H 0.281 0.719 28 H 0.393 0.607 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.402 0.598 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.144 0.856 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.260 -6.938 -1.693 31.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.212 4.212 3 Si 0.783 3.217 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.150 1.150 7 C -0.463 4.463 8 H 0.075 0.925 9 N -0.219 5.219 10 C 0.229 3.771 11 O -0.508 6.508 12 C -0.003 4.003 13 N -0.373 5.373 14 C 0.077 3.923 15 C -0.191 4.191 16 C -0.173 4.173 17 C 0.005 3.995 18 O -0.226 6.226 19 C -0.008 4.008 20 H 0.117 0.883 21 C -0.182 4.182 22 C -0.029 4.029 23 O -0.322 6.322 24 C -0.049 4.049 25 C -0.121 4.121 26 C -0.189 4.189 27 H 0.090 0.910 28 H 0.229 0.771 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.239 0.761 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.162 0.838 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 29.819 -7.305 -1.500 30.737 hybrid contribution -1.061 0.439 -0.070 1.151 sum 28.757 -6.866 -1.570 29.607 Atomic orbital electron populations 1.69796 1.08207 1.29485 1.49390 1.26156 0.96497 1.02868 0.95673 0.85379 0.79658 0.76516 0.80110 1.17981 1.20042 1.15042 1.19005 0.81264 0.95086 1.50898 0.92477 1.41918 1.05955 1.07502 1.66512 1.20799 0.90740 0.83639 0.81920 1.90530 1.71109 1.32767 1.56377 1.20926 0.88866 0.85823 1.04636 1.44459 1.03559 1.06707 1.82622 1.17993 0.83353 0.94214 0.96732 1.20557 0.95764 0.94958 1.07866 1.21119 0.92595 0.98911 1.04702 1.18855 0.82350 0.94258 1.04076 1.86096 1.20250 1.27183 1.89111 1.24057 0.98163 0.81734 0.96838 0.88310 1.23329 0.92353 0.98754 1.03753 1.23597 0.98353 0.96203 0.84748 1.88422 1.39126 1.67541 1.37097 1.23720 0.89184 0.94161 0.97850 1.20362 0.95055 0.94575 1.02066 1.20713 0.91725 0.98763 1.07722 0.90962 0.77052 0.87748 0.87612 0.76139 0.85428 0.84082 0.89313 0.86987 0.87555 0.90196 0.90170 0.91114 0.83807 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.96 21.66 0.30 -54.44 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.96 37.16 27.74 68.60 1.90 39.06 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.28 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 7 C -0.33 -18.96 10.16 84.04 0.85 -18.11 16 8 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 9 N -0.58 -26.05 5.09 -306.99 -1.56 -27.61 16 10 C 0.44 18.99 7.85 87.66 0.69 19.68 16 11 O -0.62 -32.95 15.24 -3.06 -0.05 -32.99 16 12 C 0.13 3.67 5.39 85.63 0.46 4.14 16 13 N -0.74 -22.10 5.71 -342.98 -1.96 -24.06 16 14 C 0.18 4.63 6.66 38.15 0.25 4.88 16 15 C -0.17 -3.99 9.89 22.39 0.22 -3.77 16 16 C -0.15 -3.16 8.77 22.35 0.20 -2.97 16 17 C 0.05 1.06 6.63 22.49 0.15 1.21 16 18 O -0.31 -6.09 9.89 -93.50 -0.92 -7.01 16 19 C 0.05 0.71 2.80 31.86 0.09 0.80 16 20 H 0.10 1.23 6.63 -2.39 -0.02 1.21 16 21 C -0.14 -1.48 6.89 32.05 0.22 -1.26 16 22 C 0.05 0.48 7.78 72.65 0.57 1.04 16 23 O -0.40 -7.12 11.36 -148.98 -1.69 -8.82 16 24 C 0.03 0.45 7.06 72.45 0.51 0.97 16 25 C -0.10 -2.11 9.98 22.35 0.22 -1.89 16 26 C -0.17 -3.69 9.31 22.39 0.21 -3.48 16 27 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.39 14.36 5.76 -92.71 -0.53 13.82 16 29 H 0.10 2.51 7.95 -2.39 -0.02 2.50 16 30 H 0.11 2.52 7.95 -2.39 -0.02 2.50 16 31 H 0.40 13.55 7.45 -92.71 -0.69 12.86 16 32 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 33 H 0.14 2.26 5.32 -2.91 -0.02 2.25 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 1.19 7.44 -2.39 -0.02 1.17 16 39 H 0.07 1.30 8.05 -2.39 -0.02 1.28 16 40 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.15 2.65 6.73 -2.91 -0.02 2.63 16 Total: -1.00 -74.24 342.03 0.92 -73.31 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.20 Total: 41.52 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 5.11 Total: 1.04 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -3.22 Total: -106.11 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -2.66 Total: -48.82 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 1.90 Total: 39.06 kcal Total: -74.24 0.92 -73.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175134009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.745 kcal (2) G-P(sol) polarization free energy of solvation -74.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds