Wall clock time and date at job start Fri Apr 10 2020 17:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48496 * 109.47106 * 35.08908 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21551 * 120.00303 * 359.97438 * 14 13 3 16 16 C 1.47855 * 119.99974 * 180.02562 * 14 13 3 17 17 C 1.39607 * 120.11764 * 359.72148 * 16 14 13 18 18 C 1.37966 * 119.96372 * 179.77244 * 17 16 14 19 19 C 1.38283 * 120.20746 * 0.50285 * 18 17 16 20 20 C 1.38810 * 120.24062 * 359.74813 * 19 18 17 21 21 O 1.35909 * 119.98712 * 179.97438 * 20 19 18 22 22 C 1.42898 * 116.99913 * 0.02562 * 21 20 19 23 23 C 1.50699 * 109.47200 * 179.97438 * 22 21 20 24 24 N 1.34778 * 119.99924 * 180.02562 * 23 22 21 25 25 O 1.21281 * 120.00126 * 0.02562 * 23 22 21 26 26 C 1.38495 * 120.03082 * 359.97438 * 20 19 18 27 27 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 31 31 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 32 32 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 34 34 H 1.08001 * 120.01618 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.89600 * 180.23276 * 18 17 16 36 36 H 1.07998 * 119.87945 * 179.76597 * 19 18 17 37 37 H 1.08998 * 109.47393 * 299.99651 * 22 21 20 38 38 H 1.09001 * 109.47089 * 59.99831 * 22 21 20 39 39 H 0.97000 * 120.00286 * 0.02562 * 24 23 22 40 40 H 0.97003 * 119.99695 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.10240 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3367 2.6302 -0.4621 16 6 0.0718 3.3149 -2.6587 17 6 0.9748 3.3539 -3.7227 18 6 0.6171 3.9625 -4.9081 19 6 -0.6303 4.5440 -5.0429 20 6 -1.5329 4.5148 -3.9887 21 8 -2.7573 5.0883 -4.1267 22 6 -3.0480 5.7025 -5.3837 23 6 -4.4397 6.2797 -5.3509 24 7 -4.9330 6.9114 -6.4345 25 8 -5.1159 6.1757 -4.3495 26 6 -1.1863 3.9015 -2.7963 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8280 1.5270 2.3971 33 1 2.2931 2.1156 -1.9978 34 1 1.9516 2.9050 -3.6190 35 1 1.3151 3.9887 -5.7318 36 1 -0.9034 5.0223 -5.9719 37 1 -2.3285 6.4989 -5.5741 38 1 -2.9828 4.9569 -6.1762 39 1 -4.3923 6.9943 -7.2356 40 1 -5.8289 7.2826 -6.4135 41 1 -1.8878 3.8777 -1.9755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183916637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:11 Heat of formation + Delta-G solvation = -88.622602 kcal Electronic energy + Delta-G solvation = -24396.054052 eV Core-core repulsion = 20662.258503 eV Total energy + Delta-G solvation = -3733.795550 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68977 -39.75180 -38.90127 -37.06522 -35.18566 -34.22283 -32.44995 -31.79823 -31.15413 -30.12899 -28.43762 -27.47682 -24.03883 -22.72026 -22.45168 -21.47820 -20.38337 -19.59505 -18.77347 -18.09588 -17.25885 -16.73668 -16.71909 -16.19784 -16.01000 -15.66403 -15.11650 -14.79719 -14.55379 -14.22144 -14.01968 -13.82184 -13.47069 -12.95788 -12.83330 -12.74529 -12.25160 -12.00818 -11.85577 -11.79073 -11.31322 -11.18188 -10.93376 -10.68297 -10.66906 -10.39248 -10.24043 -9.96658 -9.84877 -9.26596 -9.18324 -9.04125 -8.70898 -8.39363 -8.01661 -6.23407 -4.27171 0.87878 1.33120 2.09565 2.30074 3.18163 3.28306 3.36044 3.39626 3.43941 3.97702 4.06259 4.24298 4.33678 4.46415 4.56021 4.69531 4.72703 5.05892 5.14309 5.17356 5.38243 5.52363 5.86134 6.07567 6.09741 6.11639 6.21655 6.25367 6.29237 6.37542 6.48144 6.67622 6.72507 6.81491 6.97515 7.02990 7.16258 7.30304 7.35503 7.54523 7.72731 8.12729 8.54205 8.76072 8.93907 9.38594 10.88153 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.002854 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.531692 B = 9807.287126 C =10179.588524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.052 0.948 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.286 1.286 13 N -0.693 5.693 14 C 0.541 3.459 15 O -0.543 6.543 16 C -0.081 4.081 17 C -0.122 4.122 18 C -0.087 4.087 19 C -0.196 4.196 20 C 0.115 3.885 21 O -0.289 6.289 22 C 0.040 3.960 23 C 0.519 3.481 24 N -0.852 5.852 25 O -0.514 6.514 26 C -0.091 4.091 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.268 0.732 33 H 0.393 0.607 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.403 0.597 40 H 0.408 0.592 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 8.702 -20.664 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.135 3.865 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.525 5.525 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.182 1.182 12 H -0.212 1.212 13 N -0.342 5.342 14 C 0.326 3.674 15 O -0.423 6.423 16 C -0.085 4.085 17 C -0.140 4.140 18 C -0.105 4.105 19 C -0.215 4.215 20 C 0.070 3.930 21 O -0.202 6.202 22 C -0.039 4.039 23 C 0.302 3.698 24 N -0.419 5.419 25 O -0.388 6.388 26 C -0.111 4.111 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.228 0.772 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.231 0.769 40 H 0.240 0.760 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.405 8.489 -18.920 25.249 hybrid contribution -0.020 0.445 -0.297 0.535 sum -14.425 8.934 -19.217 25.636 Atomic orbital electron populations 1.21915 0.97366 0.98931 1.02118 1.22090 0.93723 0.99337 1.01301 1.19200 0.95607 0.89130 0.82583 0.93056 1.20990 0.88546 1.52401 0.94992 0.90312 1.24913 0.94882 0.93576 0.98879 1.69877 1.09619 1.48593 1.24406 0.86929 0.81337 0.79596 0.82323 1.19822 1.18181 1.21208 1.46511 1.14084 1.55287 1.18294 1.18171 0.83074 0.79396 0.86750 1.90747 1.50916 1.59958 1.40673 1.20078 0.94018 0.99260 0.95095 1.21367 0.99693 1.00211 0.92778 1.20852 0.95530 0.96629 0.97534 1.21303 0.95635 1.05908 0.98613 1.18819 0.84241 0.95250 0.94654 1.86178 1.30956 1.69662 1.33373 1.22414 0.95185 0.98873 0.87473 1.20100 0.88121 0.78189 0.83433 1.43654 1.20947 1.61024 1.16279 1.90839 1.59951 1.56344 1.31643 1.20501 0.96668 0.97678 0.96206 0.93036 0.93136 0.95041 0.92939 0.91998 0.92229 0.77238 0.84891 0.85139 0.85454 0.88770 0.88795 0.76895 0.75978 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.53 37.16 0.32 -2.66 16 2 C -0.13 -2.73 5.54 -26.73 -0.15 -2.88 16 3 C 0.24 5.59 1.82 -69.08 -0.13 5.47 16 4 H 0.05 1.33 4.92 -51.93 -0.26 1.08 16 5 C -0.53 -14.11 9.05 -34.44 -0.31 -14.42 16 6 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -26.01 13.96 55.43 0.77 -25.23 16 9 Si 0.87 21.58 26.69 -169.99 -4.54 17.04 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.26 -6.26 6.88 56.52 0.39 -5.87 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.69 -13.92 4.98 -55.87 -0.28 -14.20 16 14 C 0.54 10.68 6.37 -12.32 -0.08 10.60 16 15 O -0.54 -12.43 13.48 5.32 0.07 -12.35 16 16 C -0.08 -1.30 5.87 -104.98 -0.62 -1.91 16 17 C -0.12 -1.55 9.54 -39.17 -0.37 -1.92 16 18 C -0.09 -0.88 10.03 -39.66 -0.40 -1.28 16 19 C -0.20 -1.91 9.03 -39.35 -0.36 -2.26 16 20 C 0.12 1.47 6.68 -39.28 -0.26 1.21 16 21 O -0.29 -3.66 9.67 -39.36 -0.38 -4.04 16 22 C 0.04 0.29 5.22 36.01 0.19 0.48 16 23 C 0.52 4.51 8.18 -10.99 -0.09 4.42 16 24 N -0.85 -3.08 8.87 31.22 0.28 -2.80 16 25 O -0.51 -7.48 17.34 -14.35 -0.25 -7.72 16 26 C -0.09 -1.41 9.53 -39.02 -0.37 -1.78 16 27 H 0.05 1.12 7.88 -51.93 -0.41 0.71 16 28 H 0.05 1.03 5.63 -51.93 -0.29 0.74 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.39 7.90 -51.93 -0.41 0.98 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.39 6.88 6.62 -40.82 -0.27 6.61 16 34 H 0.13 1.52 6.40 -52.49 -0.34 1.19 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 0.76 6.28 -52.49 -0.33 0.43 16 37 H 0.09 0.43 7.66 -51.93 -0.40 0.03 16 38 H 0.09 0.42 7.66 -51.93 -0.40 0.02 16 39 H 0.40 -0.01 8.83 -40.82 -0.36 -0.37 16 40 H 0.41 1.22 8.93 -40.82 -0.36 0.86 16 41 H 0.15 2.44 7.65 -52.49 -0.40 2.04 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -36.39 344.00 -6.93 -43.32 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.06 Total: 5.57 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.72 Total: -4.75 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.77 Total: -42.24 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.56 Total: -24.12 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.54 Total: 17.04 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.39 -6.93 -43.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183916637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.307 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds