Wall clock time and date at job start Fri Apr 10 2020 17:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48496 * 109.47106 * 35.08908 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21551 * 120.00303 * 359.97438 * 14 13 3 16 16 C 1.47855 * 119.99974 * 180.02562 * 14 13 3 17 17 C 1.39607 * 120.11764 * 359.72148 * 16 14 13 18 18 C 1.37966 * 119.96372 * 179.77244 * 17 16 14 19 19 C 1.38283 * 120.20746 * 0.50285 * 18 17 16 20 20 C 1.38810 * 120.24062 * 359.74813 * 19 18 17 21 21 O 1.35909 * 119.98712 * 179.97438 * 20 19 18 22 22 C 1.42898 * 116.99913 * 0.02562 * 21 20 19 23 23 C 1.50699 * 109.47200 * 179.97438 * 22 21 20 24 24 N 1.34778 * 119.99924 * 180.02562 * 23 22 21 25 25 O 1.21281 * 120.00126 * 0.02562 * 23 22 21 26 26 C 1.38495 * 120.03082 * 359.97438 * 20 19 18 27 27 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 31 31 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 32 32 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 34 34 H 1.08001 * 120.01618 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.89600 * 180.23276 * 18 17 16 36 36 H 1.07998 * 119.87945 * 179.76597 * 19 18 17 37 37 H 1.08998 * 109.47393 * 299.99651 * 22 21 20 38 38 H 1.09001 * 109.47089 * 59.99831 * 22 21 20 39 39 H 0.97000 * 120.00286 * 0.02562 * 24 23 22 40 40 H 0.97003 * 119.99695 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.10240 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3367 2.6302 -0.4621 16 6 0.0718 3.3149 -2.6587 17 6 0.9748 3.3539 -3.7227 18 6 0.6171 3.9625 -4.9081 19 6 -0.6303 4.5440 -5.0429 20 6 -1.5329 4.5148 -3.9887 21 8 -2.7573 5.0883 -4.1267 22 6 -3.0480 5.7025 -5.3837 23 6 -4.4397 6.2797 -5.3509 24 7 -4.9330 6.9114 -6.4345 25 8 -5.1159 6.1757 -4.3495 26 6 -1.1863 3.9015 -2.7963 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8280 1.5270 2.3971 33 1 2.2931 2.1156 -1.9978 34 1 1.9516 2.9050 -3.6190 35 1 1.3151 3.9887 -5.7318 36 1 -0.9034 5.0223 -5.9719 37 1 -2.3285 6.4989 -5.5741 38 1 -2.9828 4.9569 -6.1762 39 1 -4.3923 6.9943 -7.2356 40 1 -5.8289 7.2826 -6.4135 41 1 -1.8878 3.8777 -1.9755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183916637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:11 Heat of formation + Delta-G solvation = -117.696665 kcal Electronic energy + Delta-G solvation = -24397.314798 eV Core-core repulsion = 20662.258503 eV Total energy + Delta-G solvation = -3735.056295 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60959 -40.88037 -39.96645 -38.07692 -36.95825 -34.79664 -34.43500 -33.42023 -32.12620 -31.21568 -29.38517 -29.08027 -25.39808 -24.38915 -23.42476 -22.41980 -21.60502 -21.19770 -19.98698 -18.80333 -18.63211 -17.84140 -17.43048 -17.36613 -17.15452 -16.90825 -16.34760 -16.16244 -16.00791 -15.39723 -15.13875 -14.82806 -14.79260 -14.64054 -14.16257 -13.86092 -13.78668 -13.68847 -13.37121 -12.94677 -12.81555 -12.60244 -12.40779 -12.12718 -12.07463 -11.86666 -11.70645 -11.21699 -11.12281 -10.88017 -10.81061 -10.75069 -10.07742 -9.72666 -9.29526 -8.39423 -6.44488 -0.16615 0.39643 1.27997 1.33106 1.44177 1.48699 1.65377 1.94005 2.26533 2.39889 2.86354 2.88036 3.03380 3.73189 3.77837 3.94095 4.05554 4.14744 4.15217 4.19916 4.30622 4.35558 4.40012 4.49491 4.58150 4.81191 4.90944 5.08660 5.18322 5.23365 5.25210 5.34879 5.38143 5.41896 5.53681 5.62192 5.73064 5.82824 6.13503 6.26542 6.45732 6.59629 6.86461 7.20574 7.27242 7.41278 8.75270 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.002854 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.531692 B = 9807.287126 C =10179.588524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C 0.241 3.759 4 H 0.027 0.973 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.927 5.927 9 Si 0.919 3.081 10 H -0.278 1.278 11 H -0.255 1.255 12 H -0.276 1.276 13 N -0.692 5.692 14 C 0.539 3.461 15 O -0.584 6.584 16 C -0.105 4.105 17 C -0.124 4.124 18 C -0.074 4.074 19 C -0.171 4.171 20 C 0.114 3.886 21 O -0.324 6.324 22 C 0.030 3.970 23 C 0.514 3.486 24 N -0.824 5.824 25 O -0.588 6.588 26 C -0.121 4.121 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.270 0.730 33 H 0.406 0.594 34 H 0.143 0.857 35 H 0.176 0.824 36 H 0.180 0.820 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.424 0.576 40 H 0.413 0.587 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 9.532 -24.688 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C 0.137 3.863 4 H 0.045 0.955 5 C -0.563 4.563 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.566 5.566 9 Si 0.745 3.255 10 H -0.204 1.204 11 H -0.179 1.179 12 H -0.202 1.202 13 N -0.341 5.341 14 C 0.327 3.673 15 O -0.466 6.466 16 C -0.108 4.108 17 C -0.143 4.143 18 C -0.091 4.091 19 C -0.189 4.189 20 C 0.069 3.931 21 O -0.237 6.237 22 C -0.047 4.047 23 C 0.298 3.702 24 N -0.391 5.391 25 O -0.468 6.468 26 C -0.141 4.141 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.243 0.757 34 H 0.160 0.840 35 H 0.193 0.807 36 H 0.197 0.803 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.257 0.743 40 H 0.246 0.754 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.635 9.344 -23.045 28.854 hybrid contribution -0.017 0.292 0.713 0.771 sum -14.652 9.636 -22.332 28.394 Atomic orbital electron populations 1.21782 0.96161 1.00317 1.00976 1.21999 0.94697 0.97910 1.01538 1.18950 0.93563 0.90295 0.83487 0.95514 1.21176 0.89945 1.50908 0.94226 0.92019 1.25509 0.95683 0.93905 1.01281 1.69958 1.10885 1.50615 1.25112 0.86169 0.80156 0.79105 0.80119 1.20396 1.17906 1.20175 1.46215 1.14870 1.55517 1.17524 1.18757 0.82106 0.78525 0.87871 1.90714 1.51944 1.61404 1.42576 1.19696 0.95344 1.01490 0.94318 1.21567 0.99356 1.00455 0.92926 1.21356 0.96232 0.94307 0.97219 1.21842 0.94238 1.03726 0.99096 1.18797 0.85057 0.94844 0.94382 1.86141 1.30944 1.70032 1.36600 1.22872 0.94849 1.00757 0.86255 1.20540 0.88514 0.77848 0.83297 1.43463 1.21236 1.58668 1.15712 1.90818 1.61860 1.59553 1.34529 1.20352 0.96386 1.00110 0.97206 0.94988 0.93537 0.92241 0.91545 0.92851 0.92021 0.75749 0.83967 0.80704 0.80274 0.85094 0.84965 0.74310 0.75428 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 8.53 71.98 0.61 -4.89 16 2 C -0.12 -5.33 5.54 30.59 0.17 -5.16 16 3 C 0.24 11.55 1.82 44.25 0.08 11.63 16 4 H 0.03 1.43 4.92 -2.39 -0.01 1.42 16 5 C -0.52 -28.29 9.05 25.60 0.23 -28.06 16 6 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 7 C 0.04 2.09 5.47 84.65 0.46 2.55 16 8 N -0.93 -55.15 13.96 21.45 0.30 -54.85 16 9 Si 0.92 45.40 26.69 68.60 1.83 47.23 16 10 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 11 H -0.26 -12.37 6.88 99.48 0.68 -11.68 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.69 -28.18 4.98 -448.96 -2.24 -30.41 16 14 C 0.54 22.00 6.37 86.79 0.55 22.55 16 15 O -0.58 -28.16 13.48 -3.88 -0.05 -28.21 16 16 C -0.11 -3.38 5.87 -20.10 -0.12 -3.50 16 17 C -0.12 -2.87 9.54 22.54 0.21 -2.65 16 18 C -0.07 -1.10 10.03 22.22 0.22 -0.88 16 19 C -0.17 -2.43 9.03 22.42 0.20 -2.22 16 20 C 0.11 2.70 6.68 22.47 0.15 2.85 16 21 O -0.32 -7.78 9.67 -73.49 -0.71 -8.49 16 22 C 0.03 0.33 5.22 71.24 0.37 0.70 16 23 C 0.51 7.98 8.18 87.66 0.72 8.70 16 24 N -0.82 -3.51 8.87 -173.53 -1.54 -5.05 16 25 O -0.59 -17.44 17.34 16.00 0.28 -17.16 16 26 C -0.12 -3.86 9.53 22.63 0.22 -3.64 16 27 H 0.03 1.40 7.88 -2.39 -0.02 1.38 16 28 H 0.05 1.92 5.63 -2.39 -0.01 1.90 16 29 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.05 2.39 7.90 -2.38 -0.02 2.37 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.41 14.16 6.62 -92.71 -0.61 13.55 16 34 H 0.14 2.92 6.40 -2.91 -0.02 2.91 16 35 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.18 0.67 6.28 -2.91 -0.02 0.66 16 37 H 0.13 0.44 7.66 -2.39 -0.02 0.43 16 38 H 0.13 0.41 7.66 -2.39 -0.02 0.39 16 39 H 0.42 -1.89 8.83 -92.71 -0.82 -2.70 16 40 H 0.41 1.55 8.93 -92.71 -0.83 0.72 16 41 H 0.11 4.17 7.65 -2.91 -0.02 4.14 16 Total: -1.00 -86.12 344.00 0.78 -85.34 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -1.18 Total: 13.63 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 4.09 Total: -2.02 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -3.48 Total: -90.31 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -0.49 Total: -53.86 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.83 Total: 47.23 kcal Total: -86.12 0.78 -85.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183916637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.355 kcal (2) G-P(sol) polarization free energy of solvation -86.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds