Wall clock time and date at job start Fri Apr 10 2020 17:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47076 * 2 1 4 4 N 1.46503 * 109.46904 * 120.00086 * 2 1 3 5 5 C 1.34781 * 119.99739 * 155.00015 * 4 2 1 6 6 O 1.21279 * 119.99843 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99567 * 179.97438 * 5 4 2 8 8 N 1.46499 * 109.46912 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00532 * 179.97438 * 8 7 5 10 10 O 1.21596 * 119.99483 * 0.02562 * 9 8 7 11 11 C 1.47529 * 120.00576 * 179.97438 * 9 8 7 12 12 C 1.39668 * 120.19410 * 0.02562 * 11 9 8 13 13 C 1.37835 * 119.91853 * 179.97438 * 12 11 9 14 14 C 1.38573 * 120.31903 * 0.02562 * 13 12 11 15 15 C 1.38022 * 120.40696 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.06839 * 359.95623 * 15 14 13 17 17 O 1.35527 * 120.16025 * 180.02562 * 16 15 14 18 18 C 1.34817 * 116.99627 * 354.39561 * 17 16 15 19 19 H 1.07998 * 120.00286 * 5.06815 * 18 17 16 20 20 C 1.38705 * 119.99676 * 185.06799 * 18 17 16 21 21 N 1.31514 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99619 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47501 * 60.00015 * 22 20 18 24 24 H 1.48510 * 109.46856 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47250 * 299.99489 * 22 20 18 26 26 H 1.09006 * 109.47178 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.46898 * 59.99861 * 1 2 3 28 28 H 1.08995 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46908 * 239.99677 * 2 1 3 30 30 H 1.09003 * 109.46928 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46846 * 299.99805 * 3 2 1 32 32 H 1.09000 * 109.47213 * 60.00382 * 3 2 1 33 33 H 0.97001 * 120.00086 * 334.99680 * 4 2 1 34 34 H 1.08999 * 109.47081 * 59.99952 * 7 5 4 35 35 H 1.08995 * 109.47039 * 299.99389 * 7 5 4 36 36 H 0.97003 * 120.00039 * 0.02562 * 8 7 5 37 37 H 1.07997 * 120.04248 * 0.26955 * 12 11 9 38 38 H 1.07992 * 119.83718 * 179.97438 * 13 12 11 39 39 H 1.08000 * 119.79251 * 179.97438 * 14 13 12 40 40 H 1.07996 * 119.96390 * 179.97438 * 15 14 13 41 41 H 0.96997 * 120.00153 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2592 1.1944 6 8 3.9354 -1.1995 0.2024 7 6 3.7428 -1.9692 2.4251 8 7 5.0855 -2.4969 2.1703 9 6 5.7380 -3.1738 3.1360 10 8 5.2120 -3.3468 4.2186 11 6 7.0899 -3.7057 2.8793 12 6 7.6977 -3.5098 1.6372 13 6 8.9612 -4.0087 1.4037 14 6 9.6326 -4.7053 2.3958 15 6 9.0441 -4.9075 3.6278 16 6 7.7723 -4.4118 3.8809 17 8 7.1928 -4.6089 5.0902 18 6 7.8541 -5.3930 5.9651 19 1 8.8381 -5.7647 5.7204 20 6 7.2706 -5.7222 7.1796 21 7 6.0725 -5.2691 7.4778 22 14 8.1871 -6.8080 8.3922 23 1 9.4651 -6.1551 8.7735 24 1 7.3529 -7.0101 9.6041 25 1 8.4713 -8.1226 7.7627 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.4622 -0.7387 1.9895 34 1 3.0702 -2.7911 2.6704 35 1 3.7797 -1.2684 3.2591 36 1 5.5053 -2.3585 1.3069 37 1 7.1803 -2.9638 0.8622 38 1 9.4297 -3.8568 0.4426 39 1 10.6221 -5.0929 2.2035 40 1 9.5737 -5.4518 4.3957 41 1 5.6643 -5.4996 8.3269 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194072331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:36 Heat of formation + Delta-G solvation = -73.482344 kcal Electronic energy + Delta-G solvation = -24426.929451 eV Core-core repulsion = 20693.790433 eV Total energy + Delta-G solvation = -3733.139019 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.19529 -39.39315 -37.93656 -36.31323 -36.23429 -33.84808 -32.32034 -31.95200 -30.59055 -28.88826 -27.55750 -27.35701 -25.32562 -23.05366 -21.84496 -21.23571 -20.65267 -19.89836 -18.16047 -17.93154 -16.75962 -16.54917 -15.84766 -15.76511 -15.27200 -14.64279 -14.63252 -14.26753 -14.16934 -14.09625 -13.69474 -13.53336 -13.37836 -13.14654 -12.68187 -12.56194 -12.51891 -12.39461 -12.18631 -11.70321 -11.69535 -11.29944 -11.27622 -11.10059 -10.86173 -10.76177 -10.46269 -10.03406 -9.56565 -9.38026 -8.89385 -8.85417 -8.62043 -8.23350 -7.28005 -6.42783 -4.02500 1.74690 2.36272 2.45096 2.80757 3.12919 3.15100 3.17127 3.75033 3.80443 3.95210 4.44131 4.65881 4.66607 4.72987 4.91206 5.09488 5.21103 5.22972 5.34584 5.41386 5.43897 5.48551 5.57321 5.59305 5.61967 5.76788 5.80144 5.94356 6.09990 6.16446 6.24976 6.60820 6.72084 6.82339 6.95085 7.10643 7.26025 7.27175 7.32133 7.73133 7.93985 7.98830 8.14344 8.96890 9.07321 9.69711 10.71175 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.003185 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.387893 B = 8789.883363 C =10208.094725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 C -0.165 4.165 4 N -0.726 5.726 5 C 0.513 3.487 6 O -0.538 6.538 7 C 0.106 3.894 8 N -0.734 5.734 9 C 0.557 3.443 10 O -0.503 6.503 11 C -0.226 4.226 12 C -0.036 4.036 13 C -0.230 4.230 14 C -0.050 4.050 15 C -0.239 4.239 16 C 0.191 3.809 17 O -0.125 6.125 18 C -0.404 4.404 19 H 0.093 0.907 20 C 0.045 3.955 21 N -0.834 5.834 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.403 0.597 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.404 0.596 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 8.716 -12.556 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.223 4.223 4 N -0.379 5.379 5 C 0.300 3.700 6 O -0.414 6.414 7 C -0.022 4.022 8 N -0.393 5.393 9 C 0.347 3.653 10 O -0.377 6.377 11 C -0.231 4.231 12 C -0.055 4.055 13 C -0.249 4.249 14 C -0.069 4.069 15 C -0.258 4.258 16 C 0.131 3.869 17 O -0.023 6.023 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.466 5.466 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.242 0.758 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.677 8.695 -12.118 16.775 hybrid contribution 0.424 -0.439 0.494 0.786 sum -7.253 8.255 -11.624 15.996 Atomic orbital electron populations 1.22082 0.94032 1.02772 1.02969 1.20950 0.94006 0.93073 0.88833 1.22196 1.02309 0.95712 1.02073 1.46044 1.17841 1.56965 1.17088 1.20771 0.81389 0.78146 0.89722 1.90675 1.56061 1.59703 1.34985 1.20904 0.87014 0.99333 0.94975 1.45647 1.16267 1.59275 1.18133 1.18224 0.85595 0.77846 0.83605 1.90947 1.67509 1.56176 1.23092 1.18760 0.95889 1.13317 0.95151 1.20839 0.94611 0.95927 0.94132 1.20481 0.96749 1.07862 0.99796 1.20907 0.98116 0.95132 0.92702 1.21147 0.96723 1.08963 0.98952 1.19261 0.90574 0.91164 0.85902 1.84173 1.43765 1.56772 1.17569 1.21452 1.01455 1.28211 0.96839 0.88932 1.25370 0.96009 0.97568 0.97329 1.70113 1.13389 1.40255 1.22823 0.85801 0.78940 0.79707 0.79089 1.19384 1.20188 1.19388 0.91945 0.90926 0.91848 0.89369 0.91943 0.91664 0.92394 0.76203 0.88655 0.88672 0.75816 0.86775 0.87200 0.87158 0.85050 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.38 37.16 0.35 -0.53 16 2 C 0.14 1.09 3.18 -67.93 -0.22 0.88 16 3 C -0.16 -1.29 9.48 37.16 0.35 -0.93 16 4 N -0.73 -6.52 5.08 -53.81 -0.27 -6.80 16 5 C 0.51 6.45 7.86 -10.98 -0.09 6.37 16 6 O -0.54 -8.33 15.33 5.56 0.09 -8.25 16 7 C 0.11 1.49 6.15 -5.19 -0.03 1.46 16 8 N -0.73 -12.80 5.48 -62.53 -0.34 -13.15 16 9 C 0.56 12.52 7.76 -12.47 -0.10 12.42 16 10 O -0.50 -13.62 15.17 -16.57 -0.25 -13.87 16 11 C -0.23 -5.08 5.89 -104.81 -0.62 -5.69 16 12 C -0.04 -0.66 9.54 -39.20 -0.37 -1.04 16 13 C -0.23 -3.96 10.03 -39.61 -0.40 -4.35 16 14 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 15 C -0.24 -5.21 9.16 -39.44 -0.36 -5.57 16 16 C 0.19 4.80 6.66 -38.60 -0.26 4.55 16 17 O -0.12 -3.69 7.84 -21.08 -0.17 -3.86 16 18 C -0.40 -11.46 9.49 30.90 0.29 -11.17 16 19 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 20 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 21 N -0.83 -25.07 13.67 55.48 0.76 -24.31 16 22 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.86 7.58 -51.93 -0.39 0.47 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.40 2.63 8.60 -40.82 -0.35 2.28 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.40 6.53 5.47 -40.82 -0.22 6.30 16 37 H 0.11 1.75 6.40 -52.49 -0.34 1.41 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -35.95 351.99 -7.08 -43.03 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.24 Total: 10.15 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.94 Total: -3.77 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.14 Total: -44.25 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.33 Total: -25.98 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.95 -7.08 -43.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194072331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.456 kcal (2) G-P(sol) polarization free energy of solvation -35.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds