Wall clock time and date at job start Fri Apr 10 2020 17:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47076 * 2 1 4 4 N 1.46503 * 109.46904 * 120.00086 * 2 1 3 5 5 C 1.34781 * 119.99739 * 155.00015 * 4 2 1 6 6 O 1.21279 * 119.99843 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99567 * 179.97438 * 5 4 2 8 8 N 1.46499 * 109.46912 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00532 * 179.97438 * 8 7 5 10 10 O 1.21596 * 119.99483 * 0.02562 * 9 8 7 11 11 C 1.47529 * 120.00576 * 179.97438 * 9 8 7 12 12 C 1.39668 * 120.19410 * 0.02562 * 11 9 8 13 13 C 1.37835 * 119.91853 * 179.97438 * 12 11 9 14 14 C 1.38573 * 120.31903 * 0.02562 * 13 12 11 15 15 C 1.38022 * 120.40696 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.06839 * 359.95623 * 15 14 13 17 17 O 1.35527 * 120.16025 * 180.02562 * 16 15 14 18 18 C 1.34817 * 116.99627 * 354.39561 * 17 16 15 19 19 H 1.07998 * 120.00286 * 5.06815 * 18 17 16 20 20 C 1.38705 * 119.99676 * 185.06799 * 18 17 16 21 21 N 1.31514 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99619 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47501 * 60.00015 * 22 20 18 24 24 H 1.48510 * 109.46856 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47250 * 299.99489 * 22 20 18 26 26 H 1.09006 * 109.47178 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.46898 * 59.99861 * 1 2 3 28 28 H 1.08995 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46908 * 239.99677 * 2 1 3 30 30 H 1.09003 * 109.46928 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46846 * 299.99805 * 3 2 1 32 32 H 1.09000 * 109.47213 * 60.00382 * 3 2 1 33 33 H 0.97001 * 120.00086 * 334.99680 * 4 2 1 34 34 H 1.08999 * 109.47081 * 59.99952 * 7 5 4 35 35 H 1.08995 * 109.47039 * 299.99389 * 7 5 4 36 36 H 0.97003 * 120.00039 * 0.02562 * 8 7 5 37 37 H 1.07997 * 120.04248 * 0.26955 * 12 11 9 38 38 H 1.07992 * 119.83718 * 179.97438 * 13 12 11 39 39 H 1.08000 * 119.79251 * 179.97438 * 14 13 12 40 40 H 1.07996 * 119.96390 * 179.97438 * 15 14 13 41 41 H 0.96997 * 120.00153 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2592 1.1944 6 8 3.9354 -1.1995 0.2024 7 6 3.7428 -1.9692 2.4251 8 7 5.0855 -2.4969 2.1703 9 6 5.7380 -3.1738 3.1360 10 8 5.2120 -3.3468 4.2186 11 6 7.0899 -3.7057 2.8793 12 6 7.6977 -3.5098 1.6372 13 6 8.9612 -4.0087 1.4037 14 6 9.6326 -4.7053 2.3958 15 6 9.0441 -4.9075 3.6278 16 6 7.7723 -4.4118 3.8809 17 8 7.1928 -4.6089 5.0902 18 6 7.8541 -5.3930 5.9651 19 1 8.8381 -5.7647 5.7204 20 6 7.2706 -5.7222 7.1796 21 7 6.0725 -5.2691 7.4778 22 14 8.1871 -6.8080 8.3922 23 1 9.4651 -6.1551 8.7735 24 1 7.3529 -7.0101 9.6041 25 1 8.4713 -8.1226 7.7627 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.4622 -0.7387 1.9895 34 1 3.0702 -2.7911 2.6704 35 1 3.7797 -1.2684 3.2591 36 1 5.5053 -2.3585 1.3069 37 1 7.1803 -2.9638 0.8622 38 1 9.4297 -3.8568 0.4426 39 1 10.6221 -5.0929 2.2035 40 1 9.5737 -5.4518 4.3957 41 1 5.6643 -5.4996 8.3269 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194072331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:36 Heat of formation + Delta-G solvation = -100.338667 kcal Electronic energy + Delta-G solvation = -24428.094029 eV Core-core repulsion = 20693.790433 eV Total energy + Delta-G solvation = -3734.303596 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49738 -40.88499 -39.64813 -38.03095 -37.12692 -35.40127 -34.30707 -32.91035 -32.08124 -30.57606 -28.67034 -28.09757 -27.29409 -24.59812 -23.20711 -22.43752 -21.60158 -21.51055 -19.85340 -19.60378 -18.23213 -17.66890 -17.30188 -16.95971 -16.65124 -16.28583 -15.94068 -15.87544 -15.70154 -15.30982 -15.29280 -14.97745 -14.65115 -14.29430 -14.06870 -13.98080 -13.53731 -13.52514 -13.21357 -13.05295 -12.96487 -12.70679 -12.49957 -12.35661 -12.31159 -12.13641 -11.92442 -11.44622 -11.11779 -10.80861 -10.69995 -10.29614 -10.14615 -9.81288 -9.04438 -8.43027 -6.13729 0.10289 0.71979 1.34369 1.40963 1.47083 1.51792 1.76590 2.05405 2.17620 2.46622 2.88114 3.22068 3.45494 3.57433 3.93435 3.98425 4.07541 4.12464 4.27448 4.29679 4.31966 4.36264 4.52750 4.63581 4.73040 4.75311 4.92997 4.97287 4.99837 5.07850 5.13357 5.26149 5.32064 5.36265 5.46858 5.48481 5.60096 5.68883 5.97393 6.15516 6.38928 6.58500 6.96107 7.05793 7.38681 7.80419 8.77168 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.003185 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.387893 B = 8789.883363 C =10208.094725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.132 3.868 3 C -0.161 4.161 4 N -0.709 5.709 5 C 0.521 3.479 6 O -0.568 6.568 7 C 0.100 3.900 8 N -0.715 5.715 9 C 0.554 3.446 10 O -0.560 6.560 11 C -0.246 4.246 12 C -0.032 4.032 13 C -0.202 4.202 14 C -0.037 4.037 15 C -0.256 4.256 16 C 0.153 3.847 17 O -0.185 6.185 18 C -0.429 4.429 19 H 0.107 0.893 20 C -0.020 4.020 21 N -0.903 5.903 22 Si 1.021 2.979 23 H -0.254 1.254 24 H -0.273 1.273 25 H -0.255 1.255 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.417 0.583 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.413 0.587 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.127 0.873 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 9.212 -15.458 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.028 3.972 3 C -0.219 4.219 4 N -0.362 5.362 5 C 0.307 3.693 6 O -0.447 6.447 7 C -0.027 4.027 8 N -0.373 5.373 9 C 0.344 3.656 10 O -0.439 6.439 11 C -0.250 4.250 12 C -0.051 4.051 13 C -0.220 4.220 14 C -0.055 4.055 15 C -0.275 4.275 16 C 0.097 3.903 17 O -0.088 6.088 18 C -0.505 4.505 19 H 0.124 0.876 20 C -0.220 4.220 21 N -0.539 5.539 22 Si 0.840 3.160 23 H -0.179 1.179 24 H -0.197 1.197 25 H -0.179 1.179 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.254 0.746 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.252 0.748 37 H 0.167 0.833 38 H 0.179 0.821 39 H 0.174 0.826 40 H 0.145 0.855 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.512 9.237 -15.118 18.876 hybrid contribution 0.115 -0.420 0.936 1.032 sum -6.397 8.818 -14.183 17.883 Atomic orbital electron populations 1.22042 0.91536 1.03214 1.04308 1.21114 0.95863 0.92803 0.87422 1.22167 1.00590 0.95695 1.03475 1.45979 1.16556 1.55487 1.18159 1.20374 0.82261 0.78212 0.88440 1.90659 1.57190 1.61193 1.35663 1.21084 0.85492 0.99811 0.96325 1.45431 1.17143 1.57493 1.17235 1.18427 0.85941 0.77783 0.83473 1.90927 1.68827 1.58607 1.25562 1.19192 0.96240 1.13225 0.96372 1.21266 0.95361 0.95529 0.92937 1.21152 0.95490 1.04141 1.01219 1.21435 0.99695 0.93576 0.90843 1.21316 0.95811 1.09501 1.00868 1.20007 0.92260 0.92241 0.85767 1.84172 1.45656 1.59422 1.19533 1.22011 1.02244 1.28756 0.97509 0.87577 1.26733 0.96920 0.99041 0.99269 1.70299 1.16082 1.43665 1.23819 0.84631 0.77677 0.77721 0.75994 1.17853 1.19740 1.17922 0.90714 0.89485 0.91871 0.91028 0.94509 0.89911 0.91412 0.74597 0.88252 0.88240 0.74790 0.83335 0.82101 0.82621 0.85514 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.38 71.98 0.68 -0.62 16 2 C 0.13 1.91 3.18 44.99 0.14 2.06 16 3 C -0.16 -2.26 9.48 71.98 0.68 -1.57 16 4 N -0.71 -11.87 5.08 -442.53 -2.25 -14.12 16 5 C 0.52 12.77 7.86 87.66 0.69 13.46 16 6 O -0.57 -17.15 15.33 -3.03 -0.05 -17.20 16 7 C 0.10 2.86 6.15 85.63 0.53 3.39 16 8 N -0.72 -25.07 5.48 -470.02 -2.57 -27.65 16 9 C 0.55 25.82 7.76 86.69 0.67 26.49 16 10 O -0.56 -32.51 15.17 16.88 0.26 -32.25 16 11 C -0.25 -11.13 5.89 -19.99 -0.12 -11.25 16 12 C -0.03 -1.09 9.54 22.52 0.21 -0.88 16 13 C -0.20 -5.88 10.03 22.25 0.22 -5.66 16 14 C -0.04 -1.21 10.03 22.30 0.22 -0.98 16 15 C -0.26 -11.08 9.16 22.36 0.20 -10.88 16 16 C 0.15 7.98 6.66 22.91 0.15 8.14 16 17 O -0.19 -11.79 7.84 0.74 0.01 -11.78 16 18 C -0.43 -25.89 9.49 67.93 0.64 -25.24 16 19 H 0.11 5.72 5.21 -2.91 -0.02 5.71 16 20 C -0.02 -1.18 5.49 84.85 0.47 -0.72 16 21 N -0.90 -58.33 13.67 21.62 0.30 -58.04 16 22 Si 1.02 43.85 29.55 68.60 2.03 45.87 16 23 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 26 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 1.32 7.58 -2.39 -0.02 1.30 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.42 4.81 8.60 -92.71 -0.80 4.01 16 34 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.41 12.86 5.47 -92.71 -0.51 12.35 16 37 H 0.15 3.94 6.40 -2.91 -0.02 3.93 16 38 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 39 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.13 5.49 5.64 -2.91 -0.02 5.47 16 41 H 0.27 16.04 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -87.54 351.99 2.89 -84.64 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.22 Total: 34.78 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.40 Total: -4.27 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -4.53 Total: -99.80 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: 0.22 Total: -61.23 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -87.54 2.89 -84.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194072331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.697 kcal (2) G-P(sol) polarization free energy of solvation -87.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds