Wall clock time and date at job start Fri Apr 10 2020 17:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 O 1.42893 * 109.46977 * 179.97438 * 16 14 13 18 18 C 1.35714 * 116.99885 * 180.02562 * 17 16 14 19 19 C 1.39000 * 119.91165 * 359.72709 * 18 17 16 20 20 C 1.37698 * 120.08674 * 179.72706 * 19 18 17 21 21 C 1.39732 * 119.91148 * 0.56594 * 20 19 18 22 22 C 1.47602 * 120.08761 * 179.68137 * 21 20 19 23 23 N 1.34779 * 119.99979 * 0.02610 * 22 21 20 24 24 O 1.21585 * 120.00425 * 180.02562 * 22 21 20 25 25 C 1.39726 * 119.82478 * 359.71014 * 21 20 19 26 26 C 1.37705 * 119.91384 * 359.97438 * 25 21 20 27 27 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 32 32 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 34 34 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 35 35 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 36 36 H 1.08007 * 119.95341 * 359.97438 * 19 18 17 37 37 H 1.08002 * 120.04123 * 180.27439 * 20 19 18 38 38 H 0.96997 * 119.99728 * 359.97438 * 23 22 21 39 39 H 0.97002 * 120.00168 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.04705 * 179.97438 * 25 21 20 41 41 H 1.08000 * 119.95909 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 8 -1.2889 3.8574 -2.5301 18 6 -1.8032 4.4992 -3.6097 19 6 -1.0420 4.6312 -4.7652 20 6 -1.5623 5.2768 -5.8646 21 6 -2.8529 5.8099 -5.8135 22 6 -3.4119 6.5088 -6.9872 23 7 -2.6774 6.6330 -8.1105 24 8 -4.5349 6.9725 -6.9409 25 6 -3.6128 5.6801 -4.6481 26 6 -3.0877 5.0274 -3.5551 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0608 2.9500 33 1 2.2720 2.1231 -1.9978 34 1 0.7280 4.1540 -2.8668 35 1 0.0680 2.6143 -3.4687 36 1 -0.0426 4.2233 -4.8022 37 1 -0.9719 5.3750 -6.7636 38 1 -1.7814 6.2634 -8.1473 39 1 -3.0448 7.0920 -8.8820 40 1 -4.6105 6.0912 -4.6045 41 1 -3.6745 4.9264 -2.6541 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273845486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:12 Heat of formation + Delta-G solvation = -116.858744 kcal Electronic energy + Delta-G solvation = -24060.103686 eV Core-core repulsion = 20325.083726 eV Total energy + Delta-G solvation = -3735.019961 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60047 -40.79457 -40.02036 -38.02057 -36.84688 -34.83405 -34.33481 -32.98585 -32.09545 -31.31460 -29.76967 -28.30803 -25.08545 -24.64395 -23.82296 -22.19415 -21.51085 -21.15284 -19.63906 -19.03425 -18.72270 -17.90143 -17.45278 -17.34623 -17.09917 -16.50831 -16.05382 -15.97152 -15.80307 -15.65646 -15.09496 -14.84005 -14.57694 -14.38530 -14.03538 -13.90847 -13.57942 -13.39698 -13.26252 -13.16008 -12.87302 -12.68484 -12.16424 -12.10140 -12.02304 -11.93603 -11.57115 -11.20638 -11.05347 -10.70028 -10.69551 -10.50387 -10.12170 -9.67392 -9.32802 -8.14828 -6.32207 -0.14965 0.30528 1.47094 1.47146 1.57485 1.68021 1.74589 1.82459 2.41782 2.58232 2.82959 2.88138 3.15370 3.64369 3.84707 3.87706 3.96099 4.08836 4.16993 4.21009 4.40633 4.49649 4.55051 4.57325 4.76329 4.94557 5.05679 5.06812 5.20229 5.26391 5.30713 5.43457 5.55433 5.59609 5.61703 5.79778 5.90202 5.91898 6.17435 6.28103 6.45156 6.76008 6.94768 7.32013 7.34702 7.55384 8.90543 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.030639 B = 0.002397 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.653813 B =11677.564613 C =12267.703695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.004 1.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.257 1.257 13 N -0.697 5.697 14 C 0.495 3.505 15 O -0.577 6.577 16 C 0.046 3.954 17 O -0.314 6.314 18 C 0.147 3.853 19 C -0.216 4.216 20 C -0.027 4.027 21 C -0.197 4.197 22 C 0.566 3.434 23 N -0.829 5.829 24 O -0.595 6.595 25 C -0.027 4.027 26 C -0.175 4.175 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.022 0.978 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.264 0.736 33 H 0.409 0.591 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.417 0.583 39 H 0.413 0.587 40 H 0.137 0.863 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 8.473 -22.070 24.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.583 4.583 6 H 0.095 0.905 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.181 1.181 13 N -0.348 5.348 14 C 0.281 3.719 15 O -0.457 6.457 16 C -0.032 4.032 17 O -0.226 6.226 18 C 0.100 3.900 19 C -0.234 4.234 20 C -0.045 4.045 21 C -0.201 4.201 22 C 0.354 3.646 23 N -0.394 5.394 24 O -0.477 6.477 25 C -0.046 4.046 26 C -0.194 4.194 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.245 0.755 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.185 0.815 37 H 0.191 0.809 38 H 0.250 0.750 39 H 0.245 0.755 40 H 0.155 0.845 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.430 8.533 -20.858 23.181 hybrid contribution 1.195 -0.140 0.230 1.225 sum -4.235 8.393 -20.629 22.670 Atomic orbital electron populations 1.21689 0.97198 0.99124 1.00153 1.21797 0.93482 0.99205 1.01559 1.18387 0.93765 0.89119 0.81175 0.98570 1.21577 0.91208 1.38801 1.06733 0.90469 1.25787 1.03259 0.94473 0.95130 1.70061 1.37090 1.38417 1.09890 0.85374 0.79186 0.77226 0.78710 1.20643 1.21327 1.18081 1.46071 1.14917 1.55869 1.17949 1.20705 0.82364 0.79232 0.89607 1.90719 1.52391 1.60303 1.42302 1.22728 0.83238 1.00917 0.96278 1.86132 1.31195 1.68859 1.36449 1.19635 0.93225 0.90662 0.86477 1.21576 1.02561 1.06540 0.92738 1.21428 0.92658 0.91677 0.98753 1.19855 0.97321 1.07647 0.95267 1.18299 0.84355 0.78111 0.83863 1.43556 1.20341 1.60437 1.15051 1.90801 1.21327 1.51384 1.84194 1.21075 0.99532 0.93333 0.90652 1.20512 0.94512 1.03609 1.00762 0.93710 0.93612 0.95913 0.93506 0.91093 0.92683 0.75483 0.85601 0.85391 0.81472 0.80927 0.75004 0.75527 0.84540 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.51 71.98 0.61 -4.88 16 2 C -0.12 -5.75 5.45 30.60 0.17 -5.58 16 3 C 0.28 13.56 2.24 44.25 0.10 13.66 16 4 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 5 C -0.55 -27.21 8.73 25.60 0.22 -26.98 16 6 H 0.08 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.70 5.29 84.65 0.45 1.15 16 8 N -0.92 -51.26 11.30 21.45 0.24 -51.02 16 9 Si 0.97 40.42 29.54 68.60 2.03 42.45 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 13 N -0.70 -25.59 5.02 -446.09 -2.24 -27.83 16 14 C 0.50 17.84 6.48 87.66 0.57 18.41 16 15 O -0.58 -27.22 13.64 16.01 0.22 -27.00 16 16 C 0.05 1.05 5.21 71.24 0.37 1.42 16 17 O -0.31 -8.89 9.66 -71.32 -0.69 -9.58 16 18 C 0.15 3.27 6.70 22.63 0.15 3.42 16 19 C -0.22 -3.07 9.01 22.32 0.20 -2.87 16 20 C -0.03 -0.30 9.53 22.50 0.21 -0.09 16 21 C -0.20 -3.44 5.87 -20.09 -0.12 -3.56 16 22 C 0.57 10.33 8.04 86.71 0.70 11.03 16 23 N -0.83 -6.56 8.82 -175.76 -1.55 -8.11 16 24 O -0.59 -16.44 17.18 -3.98 -0.07 -16.51 16 25 C -0.03 -0.57 9.58 22.50 0.22 -0.35 16 26 C -0.18 -4.01 9.97 22.33 0.22 -3.79 16 27 H 0.04 1.89 5.64 -2.39 -0.01 1.87 16 28 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.02 1.09 7.85 -2.39 -0.02 1.07 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 3.81 5.95 -2.39 -0.01 3.80 16 32 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.41 11.62 8.54 -92.71 -0.79 10.83 16 34 H 0.13 1.98 7.64 -2.39 -0.02 1.96 16 35 H 0.13 1.94 7.66 -2.39 -0.02 1.92 16 36 H 0.17 1.33 6.28 -2.91 -0.02 1.31 16 37 H 0.17 0.31 6.39 -2.91 -0.02 0.30 16 38 H 0.42 0.36 6.85 -92.71 -0.64 -0.27 16 39 H 0.41 2.38 8.93 -92.71 -0.83 1.55 16 40 H 0.14 2.93 7.64 -2.91 -0.02 2.90 16 41 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -78.32 344.43 0.86 -77.46 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -1.15 Total: 19.17 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 4.07 Total: 0.98 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -3.55 Total: -86.97 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -0.54 Total: -53.09 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -78.32 0.86 -77.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273845486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.401 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds