Wall clock time and date at job start Fri Apr 10 2020 17:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99954 * 2 1 4 4 H 1.48499 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47120 * 299.99493 * 3 2 1 6 6 H 1.48502 * 109.47221 * 59.99914 * 3 2 1 7 7 C 1.37875 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99608 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00324 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47319 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99936 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99839 * 359.97438 * 12 11 10 14 14 C 1.50694 * 119.99636 * 180.02562 * 12 11 10 15 15 N 1.46500 * 109.46960 * 179.97438 * 14 12 11 16 16 C 1.34784 * 120.00183 * 179.97438 * 15 14 12 17 17 O 1.21280 * 119.99622 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00106 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.47224 * 179.97438 * 18 16 15 20 20 C 1.38269 * 119.94432 * 89.99865 * 19 18 16 21 21 C 1.38137 * 120.06013 * 180.02562 * 20 19 18 22 22 C 1.38737 * 119.94162 * 359.97438 * 21 20 19 23 23 O 1.35896 * 120.05545 * 180.02562 * 22 21 20 24 24 C 1.38734 * 119.88732 * 0.27760 * 22 21 20 25 25 C 1.38140 * 119.94299 * 359.46795 * 24 22 21 26 26 H 0.97004 * 120.00180 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47147 * 60.00166 * 9 7 2 28 28 H 1.08997 * 109.47405 * 300.00008 * 9 7 2 29 29 H 1.09000 * 109.47274 * 60.00109 * 10 9 7 30 30 H 1.08999 * 109.47493 * 300.00344 * 10 9 7 31 31 H 0.96994 * 119.99918 * 0.02562 * 11 10 9 32 32 H 1.08997 * 109.47648 * 59.99679 * 14 12 11 33 33 H 1.09005 * 109.47096 * 299.99037 * 14 12 11 34 34 H 0.97000 * 120.00465 * 359.97438 * 15 14 12 35 35 H 1.08997 * 109.47005 * 59.99785 * 18 16 15 36 36 H 1.09005 * 109.46704 * 299.99776 * 18 16 15 37 37 H 1.08008 * 119.96973 * 0.02562 * 20 19 18 38 38 H 1.07997 * 120.03660 * 179.97438 * 21 20 19 39 39 H 0.96700 * 114.00170 * 90.00174 * 23 22 21 40 40 H 1.07999 * 120.02623 * 179.72382 * 24 22 21 41 41 H 1.08003 * 119.97390 * 180.23377 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1867 -6.0980 0.0003 13 8 3.3994 -6.0980 0.0007 14 6 1.4332 -7.4031 -0.0009 15 7 2.3851 -8.5166 -0.0008 16 6 1.9359 -9.7873 -0.0012 17 8 0.7435 -10.0089 -0.0013 18 6 2.9152 -10.9328 -0.0017 19 6 2.1617 -12.2379 -0.0015 20 6 1.8162 -12.8355 -1.1995 21 6 1.1250 -14.0315 -1.2022 22 6 0.7781 -14.6334 -0.0013 23 8 0.0986 -15.8103 -0.0012 24 6 1.1214 -14.0292 1.1994 25 6 1.8171 -12.8358 1.1966 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6240 -2.5568 0.8902 29 1 2.8719 -3.6044 0.8905 30 1 2.8720 -3.6044 -0.8894 31 1 0.5428 -4.9308 -0.0008 32 1 0.8074 -7.4606 -0.8915 33 1 0.8056 -7.4611 0.8885 34 1 3.3388 -8.3394 -0.0004 35 1 3.5419 -10.8753 0.8883 36 1 3.5418 -10.8746 -0.8918 37 1 2.0869 -12.3667 -2.1342 38 1 0.8550 -14.4977 -2.1381 39 1 0.6670 -16.5927 -0.0015 40 1 0.8485 -14.4935 2.1355 41 1 2.0879 -12.3668 2.1311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274176980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:15 Heat of formation + Delta-G solvation = -105.820048 kcal Electronic energy + Delta-G solvation = -22989.921980 eV Core-core repulsion = 19255.380693 eV Total energy + Delta-G solvation = -3734.541287 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50420 -39.79892 -38.98338 -37.11304 -35.19146 -34.40120 -32.94854 -32.44185 -31.31270 -30.15682 -28.42202 -26.55199 -24.51479 -23.14869 -22.18900 -21.12510 -20.57866 -20.37435 -18.75413 -17.86007 -16.78926 -16.49578 -16.40132 -16.00898 -15.82945 -15.80158 -15.43016 -14.84421 -14.73218 -14.48185 -14.06739 -13.81467 -13.76489 -13.61981 -12.98835 -12.82635 -12.36969 -12.36128 -12.35570 -11.94119 -11.89427 -11.27609 -11.09979 -10.78676 -10.68448 -10.42951 -10.16122 -9.99522 -9.59277 -9.32267 -9.28477 -9.27848 -8.80602 -8.68243 -8.44662 -6.14139 -4.17493 0.86449 1.06098 2.43484 2.73949 2.78786 3.25211 3.32493 3.34286 3.37950 3.64998 3.87002 4.31727 4.37418 4.47310 4.65789 4.69466 4.89354 4.91129 5.02232 5.14871 5.23105 5.25216 5.30115 5.32629 5.52242 5.68335 5.94309 6.10089 6.10501 6.23844 6.23951 6.24157 6.48161 6.62200 6.72934 7.29550 7.32357 7.44020 7.54123 7.77924 7.84057 8.03536 8.19642 8.39878 8.88506 9.47828 10.97380 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.051517 B = 0.001733 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.378226 B =16152.099026 C =16374.079763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.121 3.879 11 N -0.715 5.715 12 C 0.501 3.499 13 O -0.551 6.551 14 C 0.098 3.902 15 N -0.717 5.717 16 C 0.515 3.485 17 O -0.533 6.533 18 C -0.101 4.101 19 C -0.073 4.073 20 C -0.088 4.088 21 C -0.144 4.144 22 C 0.102 3.898 23 O -0.500 6.500 24 C -0.144 4.144 25 C -0.088 4.088 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.402 0.598 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.412 0.588 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.388 0.612 40 H 0.128 0.872 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 -29.199 -0.006 29.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.001 4.001 11 N -0.364 5.364 12 C 0.285 3.715 13 O -0.430 6.430 14 C -0.029 4.029 15 N -0.373 5.373 16 C 0.300 3.700 17 O -0.409 6.409 18 C -0.141 4.141 19 C -0.074 4.074 20 C -0.106 4.106 21 C -0.162 4.162 22 C 0.057 3.943 23 O -0.310 6.310 24 C -0.162 4.162 25 C -0.106 4.106 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.236 0.764 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.250 0.750 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.244 0.756 40 H 0.146 0.854 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.981 -28.824 -0.005 29.098 hybrid contribution 0.634 0.845 -0.001 1.057 sum 4.615 -27.979 -0.006 28.357 Atomic orbital electron populations 1.69963 1.06095 1.26855 1.50242 1.25002 0.94902 0.99467 0.94919 0.86448 0.80123 0.83281 0.77655 1.19589 1.20906 1.20911 1.21069 0.93268 0.90323 1.51510 0.92175 1.19347 0.94214 0.91087 0.98016 1.21790 0.96112 0.81185 1.00979 1.46279 1.10872 1.06410 1.72859 1.20421 0.88278 0.85737 0.77016 1.90662 1.13816 1.87466 1.51050 1.21105 0.92349 0.84691 1.04796 1.45728 1.11305 1.04652 1.75599 1.20511 0.89792 0.83390 0.76264 1.90752 1.16692 1.84667 1.48815 1.20642 0.97414 0.90217 1.05811 1.19301 0.99567 0.94961 0.93526 1.20884 0.97353 0.94696 0.97672 1.21369 0.99749 0.97258 0.97863 1.18494 0.94925 0.88415 0.92433 1.84843 1.35423 1.14218 1.96543 1.21366 0.99698 0.97291 0.97862 1.20883 0.97326 0.94734 0.97670 0.92833 0.95815 0.95806 0.92324 0.92330 0.76438 0.88446 0.88442 0.74981 0.87561 0.87556 0.85616 0.85407 0.75607 0.85406 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.26 5.09 -27.89 -0.14 0.12 16 10 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 11 N -0.71 -11.45 5.56 -60.30 -0.33 -11.78 16 12 C 0.50 7.54 7.90 -10.99 -0.09 7.45 16 13 O -0.55 -9.89 15.67 5.56 0.09 -9.80 16 14 C 0.10 1.16 6.15 -5.20 -0.03 1.13 16 15 N -0.72 -7.80 5.53 -61.47 -0.34 -8.14 16 16 C 0.51 5.68 7.82 -10.98 -0.09 5.59 16 17 O -0.53 -7.93 16.03 5.56 0.09 -7.84 16 18 C -0.10 -0.75 5.83 -29.04 -0.17 -0.92 16 19 C -0.07 -0.65 4.37 -104.60 -0.46 -1.11 16 20 C -0.09 -0.77 9.69 -39.61 -0.38 -1.16 16 21 C -0.14 -1.26 9.99 -39.43 -0.39 -1.66 16 22 C 0.10 0.92 6.71 -39.21 -0.26 0.66 16 23 O -0.50 -3.97 13.50 -19.41 -0.26 -4.23 16 24 C -0.14 -1.26 9.99 -39.43 -0.39 -1.66 16 25 C -0.09 -0.77 9.69 -39.61 -0.38 -1.16 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.40 5.54 8.47 -40.82 -0.35 5.19 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.41 4.18 7.44 -40.82 -0.30 3.88 16 35 H 0.11 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.11 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.39 1.05 9.06 45.56 0.41 1.47 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -35.11 362.12 -7.66 -42.76 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.85 Total: 5.80 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.23 Total: -3.26 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.06 Total: -44.90 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.09 Total: -21.87 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.11 -7.66 -42.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274176980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.055 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds