Wall clock time and date at job start Fri Apr 10 2020 17:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99954 * 2 1 4 4 H 1.48499 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47120 * 299.99493 * 3 2 1 6 6 H 1.48502 * 109.47221 * 59.99914 * 3 2 1 7 7 C 1.37875 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99608 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00324 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47319 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99936 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99839 * 359.97438 * 12 11 10 14 14 C 1.50694 * 119.99636 * 180.02562 * 12 11 10 15 15 N 1.46500 * 109.46960 * 179.97438 * 14 12 11 16 16 C 1.34784 * 120.00183 * 179.97438 * 15 14 12 17 17 O 1.21280 * 119.99622 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00106 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.47224 * 179.97438 * 18 16 15 20 20 C 1.38269 * 119.94432 * 89.99865 * 19 18 16 21 21 C 1.38137 * 120.06013 * 180.02562 * 20 19 18 22 22 C 1.38737 * 119.94162 * 359.97438 * 21 20 19 23 23 O 1.35896 * 120.05545 * 180.02562 * 22 21 20 24 24 C 1.38734 * 119.88732 * 0.27760 * 22 21 20 25 25 C 1.38140 * 119.94299 * 359.46795 * 24 22 21 26 26 H 0.97004 * 120.00180 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47147 * 60.00166 * 9 7 2 28 28 H 1.08997 * 109.47405 * 300.00008 * 9 7 2 29 29 H 1.09000 * 109.47274 * 60.00109 * 10 9 7 30 30 H 1.08999 * 109.47493 * 300.00344 * 10 9 7 31 31 H 0.96994 * 119.99918 * 0.02562 * 11 10 9 32 32 H 1.08997 * 109.47648 * 59.99679 * 14 12 11 33 33 H 1.09005 * 109.47096 * 299.99037 * 14 12 11 34 34 H 0.97000 * 120.00465 * 359.97438 * 15 14 12 35 35 H 1.08997 * 109.47005 * 59.99785 * 18 16 15 36 36 H 1.09005 * 109.46704 * 299.99776 * 18 16 15 37 37 H 1.08008 * 119.96973 * 0.02562 * 20 19 18 38 38 H 1.07997 * 120.03660 * 179.97438 * 21 20 19 39 39 H 0.96700 * 114.00170 * 90.00174 * 23 22 21 40 40 H 1.07999 * 120.02623 * 179.72382 * 24 22 21 41 41 H 1.08003 * 119.97390 * 180.23377 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1867 -6.0980 0.0003 13 8 3.3994 -6.0980 0.0007 14 6 1.4332 -7.4031 -0.0009 15 7 2.3851 -8.5166 -0.0008 16 6 1.9359 -9.7873 -0.0012 17 8 0.7435 -10.0089 -0.0013 18 6 2.9152 -10.9328 -0.0017 19 6 2.1617 -12.2379 -0.0015 20 6 1.8162 -12.8355 -1.1995 21 6 1.1250 -14.0315 -1.2022 22 6 0.7781 -14.6334 -0.0013 23 8 0.0986 -15.8103 -0.0012 24 6 1.1214 -14.0292 1.1994 25 6 1.8171 -12.8358 1.1966 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6240 -2.5568 0.8902 29 1 2.8719 -3.6044 0.8905 30 1 2.8720 -3.6044 -0.8894 31 1 0.5428 -4.9308 -0.0008 32 1 0.8074 -7.4606 -0.8915 33 1 0.8056 -7.4611 0.8885 34 1 3.3388 -8.3394 -0.0004 35 1 3.5419 -10.8753 0.8883 36 1 3.5418 -10.8746 -0.8918 37 1 2.0869 -12.3667 -2.1342 38 1 0.8550 -14.4977 -2.1381 39 1 0.6670 -16.5927 -0.0015 40 1 0.8485 -14.4935 2.1355 41 1 2.0879 -12.3668 2.1311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274176980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:15 Heat of formation + Delta-G solvation = -132.936283 kcal Electronic energy + Delta-G solvation = -22991.097828 eV Core-core repulsion = 19255.380693 eV Total energy + Delta-G solvation = -3735.717135 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36710 -40.72723 -39.97058 -37.73501 -36.72254 -35.44772 -34.84977 -33.11124 -31.92044 -31.82399 -29.49096 -27.52182 -26.21664 -23.76186 -23.11260 -22.70614 -21.66033 -21.38687 -19.34386 -18.89956 -18.49250 -17.62573 -17.20434 -17.14918 -16.76710 -16.74620 -16.43794 -16.15499 -15.93776 -15.75940 -15.06212 -14.87989 -14.66468 -14.36404 -14.30413 -14.15331 -13.79651 -13.22238 -13.22163 -13.00684 -12.94421 -12.54364 -12.52139 -12.49599 -12.25235 -11.69696 -11.45952 -11.36967 -11.08365 -10.97708 -10.61534 -10.26320 -10.04218 -9.90993 -9.43512 -8.24357 -6.34730 0.24036 0.43357 1.41261 1.42631 1.48468 1.55160 1.62701 1.82575 2.37359 2.50330 2.78305 3.10912 3.32440 3.63089 3.70714 3.90679 4.03419 4.09790 4.28768 4.38769 4.39058 4.44537 4.48103 4.50733 4.65002 4.74368 4.85981 4.97536 5.09138 5.21576 5.26870 5.33539 5.47327 5.48175 5.58353 5.61922 5.78398 5.92433 6.15433 6.47602 6.51512 6.79251 6.87293 7.12519 7.19339 7.34965 8.87529 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.051517 B = 0.001733 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.378226 B =16152.099026 C =16374.079763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.019 3.981 10 C 0.141 3.859 11 N -0.713 5.713 12 C 0.507 3.493 13 O -0.578 6.578 14 C 0.107 3.893 15 N -0.714 5.714 16 C 0.516 3.484 17 O -0.575 6.575 18 C -0.094 4.094 19 C -0.087 4.087 20 C -0.098 4.098 21 C -0.157 4.157 22 C 0.093 3.907 23 O -0.513 6.513 24 C -0.157 4.157 25 C -0.098 4.098 26 H 0.265 0.735 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.413 0.587 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.418 0.582 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.409 0.591 40 H 0.138 0.862 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -29.760 -0.008 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.019 4.019 10 C 0.018 3.982 11 N -0.363 5.363 12 C 0.294 3.706 13 O -0.458 6.458 14 C -0.020 4.020 15 N -0.370 5.370 16 C 0.304 3.696 17 O -0.454 6.454 18 C -0.133 4.133 19 C -0.087 4.087 20 C -0.116 4.116 21 C -0.175 4.175 22 C 0.048 3.952 23 O -0.326 6.326 24 C -0.175 4.175 25 C -0.116 4.116 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.249 0.751 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.256 0.744 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.268 0.732 40 H 0.156 0.844 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.046 -29.420 -0.008 29.850 hybrid contribution 0.286 0.940 0.000 0.982 sum 5.332 -28.481 -0.007 28.975 Atomic orbital electron populations 1.70066 1.07561 1.27908 1.51110 1.25873 0.95769 1.03129 0.94484 0.85398 0.79038 0.78819 0.77790 1.18812 1.20370 1.20381 1.21508 0.93656 0.91887 1.51339 0.92122 1.19171 0.94361 0.91882 0.96481 1.21258 0.94957 0.81784 1.00220 1.46073 1.11411 1.05543 1.73302 1.20869 0.87950 0.86216 0.75598 1.90652 1.15191 1.87911 1.52064 1.21022 0.92160 0.82982 1.05865 1.45754 1.11387 1.04482 1.75346 1.21099 0.89776 0.83810 0.74868 1.90739 1.18639 1.85163 1.50828 1.20701 0.96670 0.87728 1.08230 1.19530 0.99970 0.95623 0.93599 1.21145 0.97252 0.94797 0.98375 1.21585 1.00021 0.97570 0.98356 1.18667 0.94859 0.88917 0.92733 1.84780 1.36442 1.14872 1.96530 1.21583 0.99979 0.97608 0.98356 1.21143 0.97221 0.94830 0.98372 0.92600 0.97254 0.97247 0.93083 0.93090 0.75070 0.87336 0.87332 0.74364 0.85084 0.85077 0.84334 0.84365 0.73181 0.84372 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.68 13.29 21.45 0.28 -53.39 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.96 42.89 29.54 68.60 2.03 44.91 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.55 -29.69 9.11 25.60 0.23 -29.46 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.02 0.90 5.09 29.85 0.15 1.05 16 10 C 0.14 5.67 5.61 86.38 0.48 6.15 16 11 N -0.71 -22.29 5.56 -463.07 -2.57 -24.86 16 12 C 0.51 14.61 7.90 87.65 0.69 15.30 16 13 O -0.58 -20.05 15.67 -3.02 -0.05 -20.10 16 14 C 0.11 2.34 6.15 85.63 0.53 2.87 16 15 N -0.71 -14.11 5.53 -466.79 -2.58 -16.69 16 16 C 0.52 10.43 7.82 87.66 0.69 11.12 16 17 O -0.57 -16.43 16.03 -3.03 -0.05 -16.48 16 18 C -0.09 -1.16 5.83 29.10 0.17 -0.99 16 19 C -0.09 -1.42 4.37 -19.85 -0.09 -1.51 16 20 C -0.10 -1.60 9.69 22.25 0.22 -1.39 16 21 C -0.16 -2.64 9.99 22.37 0.22 -2.41 16 22 C 0.09 1.62 6.71 22.51 0.15 1.77 16 23 O -0.51 -7.74 13.50 -92.38 -1.25 -8.98 16 24 C -0.16 -2.64 9.99 22.37 0.22 -2.41 16 25 C -0.10 -1.60 9.69 22.25 0.22 -1.39 16 26 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.41 11.07 8.47 -92.71 -0.79 10.29 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.19 16 33 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.42 7.59 7.44 -92.71 -0.69 6.90 16 35 H 0.13 0.98 8.08 -2.39 -0.02 0.96 16 36 H 0.13 0.98 8.09 -2.38 -0.02 0.96 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.41 1.83 9.06 -74.06 -0.67 1.16 16 40 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -74.70 362.12 -0.90 -75.60 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -1.07 Total: 20.49 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 4.35 Total: -0.50 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -4.87 Total: -94.94 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -1.34 Total: -45.56 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -74.70 -0.90 -75.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274176980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.335 kcal (2) G-P(sol) polarization free energy of solvation -74.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds