Wall clock time and date at job start Fri Apr 10 2020 17:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35023 * 119.55523 * 2 1 4 4 C 1.40922 * 119.80556 * 179.97438 * 3 2 1 5 5 O 1.35451 * 120.50866 * 179.97438 * 4 3 2 6 6 C 1.38251 * 118.97935 * 0.02562 * 4 3 2 7 7 C 1.39978 * 119.11969 * 359.97438 * 6 4 3 8 8 O 1.22121 * 119.92482 * 179.97438 * 7 6 4 9 9 N 1.34595 * 120.14412 * 359.73115 * 7 6 4 10 10 C 1.46499 * 119.46430 * 180.26910 * 9 7 6 11 11 C 1.53007 * 109.46818 * 270.27509 * 10 9 7 12 12 C 1.50702 * 109.46772 * 180.02562 * 11 10 9 13 13 O 1.21294 * 120.00173 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99805 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00048 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00178 * 224.28920 * 15 14 12 17 17 C 1.38952 * 119.99915 * 44.28851 * 15 14 12 18 18 N 1.31415 * 119.99780 * 18.20519 * 17 15 14 19 19 Si 1.86797 * 120.00166 * 198.20652 * 17 15 14 20 20 H 1.48501 * 109.46998 * 59.99822 * 19 17 15 21 21 H 1.48497 * 109.47352 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47051 * 300.00187 * 19 17 15 23 23 C 1.46500 * 119.99702 * 0.02562 * 14 12 11 24 24 C 1.53002 * 117.49688 * 183.22515 * 23 14 12 25 25 C 1.52995 * 60.00081 * 252.50818 * 24 23 14 26 26 H 1.08991 * 109.47503 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.46913 * 239.99277 * 1 2 3 28 28 H 1.09000 * 109.46881 * 119.99714 * 1 2 3 29 29 H 1.07997 * 120.09617 * 0.02562 * 3 2 1 30 30 H 0.96702 * 114.00083 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.43821 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47804 * 30.27596 * 10 9 7 33 33 H 1.08997 * 109.46803 * 150.28079 * 10 9 7 34 34 H 1.08993 * 109.47305 * 300.00566 * 11 10 9 35 35 H 1.08997 * 109.46968 * 60.00671 * 11 10 9 36 36 H 0.97000 * 119.99336 * 174.91799 * 18 17 15 37 37 H 1.08999 * 115.54985 * 328.92753 * 23 14 12 38 38 H 1.09009 * 117.49679 * 359.97438 * 24 23 14 39 39 H 1.09000 * 117.50064 * 145.01545 * 24 23 14 40 40 H 1.08995 * 117.49992 * 252.51208 * 25 24 23 41 41 H 1.09007 * 117.51799 * 107.48125 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1731 1.1745 0.0000 4 6 3.5823 1.1807 0.0005 5 8 4.2648 2.3507 0.0000 6 6 4.2574 -0.0258 0.0005 7 6 3.5229 -1.2174 0.0005 8 8 4.1042 -2.2913 0.0000 9 7 2.1774 -1.1820 0.0060 10 6 1.4235 -2.4381 0.0119 11 6 1.1611 -2.8821 -1.4286 12 6 0.3851 -4.1740 -1.4225 13 8 0.0722 -4.6886 -0.3697 14 7 0.0387 -4.7574 -2.5871 15 6 -0.6668 -5.9329 -2.5816 16 1 -0.3845 -6.7353 -3.2471 17 6 -1.7451 -6.0920 -1.7197 18 7 -2.3151 -5.0385 -1.1791 19 14 -2.3845 -7.8032 -1.3297 20 1 -1.3029 -8.6048 -0.7028 21 1 -3.5322 -7.7013 -0.3929 22 1 -2.8270 -8.4641 -2.5837 23 6 0.4170 -4.1361 -3.8587 24 6 -0.0701 -4.8063 -5.1449 25 6 1.4050 -4.8931 -4.7485 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6274 2.1065 0.0004 30 1 5.2261 2.2453 0.0009 31 1 5.3372 -0.0486 0.0005 32 1 1.9996 -3.2053 0.5293 33 1 0.4735 -2.2892 0.5249 34 1 0.5851 -2.1150 -1.9461 35 1 2.1112 -3.0310 -1.9417 36 1 -3.1124 -5.1434 -0.6367 37 1 0.4790 -3.0479 -3.8501 38 1 -0.6718 -5.7097 -5.0450 39 1 -0.3289 -4.1590 -5.9829 40 1 2.1168 -4.3028 -5.3256 41 1 1.7739 -5.8532 -4.3876 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275654492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:30 Heat of formation + Delta-G solvation = -69.109493 kcal Electronic energy + Delta-G solvation = -25594.814208 eV Core-core repulsion = 21861.864810 eV Total energy + Delta-G solvation = -3732.949398 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.58363 -40.45408 -39.46125 -38.19321 -37.80425 -35.21372 -34.56449 -32.93140 -32.60666 -31.37658 -28.40232 -27.46728 -25.43681 -23.76530 -23.29974 -23.01403 -22.73250 -20.99439 -19.68360 -18.80993 -18.29545 -17.93749 -17.57271 -16.91876 -16.67678 -16.59482 -16.16559 -15.86867 -15.36079 -15.18991 -14.96006 -14.69097 -14.54311 -14.42047 -14.17277 -14.04511 -13.85739 -13.38208 -13.11215 -12.89568 -12.81116 -12.76497 -12.59492 -12.26833 -12.15392 -12.08084 -11.96981 -11.67442 -11.25787 -11.14527 -10.72874 -10.24749 -9.99721 -9.02695 -8.98843 -8.21070 -5.98436 -0.12637 0.87098 1.36254 1.45136 1.48202 1.57281 2.21590 2.37567 2.58347 2.68807 3.05930 3.10696 3.33349 3.49726 3.66728 3.87125 3.96603 4.01714 4.08007 4.10217 4.24342 4.26918 4.36444 4.39777 4.47141 4.63834 4.70474 4.79263 4.86420 4.91205 5.02031 5.05487 5.10198 5.14625 5.24658 5.44689 5.49585 5.51589 6.15029 6.20144 6.54449 7.02031 7.03006 7.15018 7.67123 8.30659 8.87776 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.003965 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.867183 B = 7059.676274 C = 7539.369893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.196 3.804 3 C -0.246 4.246 4 C 0.266 3.734 5 O -0.458 6.458 6 C -0.392 4.392 7 C 0.513 3.487 8 O -0.613 6.613 9 N -0.500 5.500 10 C 0.120 3.880 11 C -0.122 4.122 12 C 0.474 3.526 13 O -0.584 6.584 14 N -0.440 5.440 15 C -0.362 4.362 16 H 0.074 0.926 17 C 0.029 3.971 18 N -0.864 5.864 19 Si 0.967 3.033 20 H -0.287 1.287 21 H -0.283 1.283 22 H -0.257 1.257 23 C 0.043 3.957 24 C -0.162 4.162 25 C -0.189 4.189 26 H 0.129 0.871 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.186 0.814 30 H 0.428 0.572 31 H 0.158 0.842 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.261 0.739 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.318 17.773 -2.265 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.087 3.913 3 C -0.269 4.269 4 C 0.212 3.788 5 O -0.262 6.262 6 C -0.415 4.415 7 C 0.320 3.680 8 O -0.502 6.502 9 N -0.211 5.211 10 C -0.002 4.002 11 C -0.163 4.163 12 C 0.262 3.738 13 O -0.466 6.466 14 N -0.160 5.160 15 C -0.489 4.489 16 H 0.091 0.909 17 C -0.178 4.178 18 N -0.499 5.499 19 Si 0.792 3.208 20 H -0.213 1.213 21 H -0.209 1.209 22 H -0.182 1.182 23 C -0.062 4.062 24 C -0.199 4.199 25 C -0.227 4.227 26 H 0.148 0.852 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.203 0.797 30 H 0.285 0.715 31 H 0.176 0.824 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.101 0.899 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.862 17.178 -1.557 18.218 hybrid contribution 0.405 -1.526 0.364 1.620 sum 6.267 15.652 -1.193 16.902 Atomic orbital electron populations 1.21310 0.85694 1.07347 1.04335 1.20904 0.96543 0.83933 0.89957 1.20164 0.90963 0.98334 1.17425 1.19203 0.91908 0.84109 0.83551 1.84778 1.26984 1.27115 1.87344 1.22156 1.01531 0.90201 1.27586 1.17102 0.80784 0.91312 0.78785 1.90944 1.68939 1.33432 1.56889 1.45664 1.07998 1.07648 1.59786 1.21399 0.96891 0.84396 0.97492 1.21637 1.00658 0.96581 0.97449 1.20307 0.81826 0.87491 0.84160 1.90493 1.57504 1.66664 1.31901 1.42939 1.48542 1.21729 1.02764 1.19030 1.11809 0.92412 1.25681 0.90857 1.25945 0.95447 1.00584 0.95873 1.69883 1.17911 1.31029 1.31034 0.85428 0.77109 0.79684 0.78572 1.21282 1.20860 1.18185 1.22037 1.04556 0.95949 0.83670 1.23105 0.96509 1.03273 0.97060 1.23315 0.93197 1.02244 1.03964 0.85217 0.89500 0.89804 0.79706 0.71460 0.82412 0.91296 0.87663 0.87881 0.90206 0.92932 0.85651 0.89902 0.86161 0.86120 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.72 71.24 0.62 -1.59 16 2 C 0.20 4.28 6.65 41.19 0.27 4.55 16 3 C -0.25 -4.32 9.57 22.19 0.21 -4.11 16 4 C 0.27 5.01 6.95 22.93 0.16 5.17 16 5 O -0.46 -5.60 13.58 -87.48 -1.19 -6.79 16 6 C -0.39 -9.96 9.71 22.69 0.22 -9.74 16 7 C 0.51 17.92 7.38 84.69 0.63 18.55 16 8 O -0.61 -27.61 16.62 -5.71 -0.09 -27.70 16 9 N -0.50 -15.39 2.59 -637.15 -1.65 -17.04 16 10 C 0.12 4.47 4.15 86.38 0.36 4.83 16 11 C -0.12 -4.75 4.63 29.85 0.14 -4.61 16 12 C 0.47 24.18 6.97 87.66 0.61 24.79 16 13 O -0.58 -34.83 13.74 -3.07 -0.04 -34.87 16 14 N -0.44 -22.11 2.83 -613.12 -1.74 -23.84 16 15 C -0.36 -20.03 7.92 84.04 0.67 -19.37 16 16 H 0.07 3.98 7.26 -2.91 -0.02 3.96 16 17 C 0.03 1.61 4.39 84.93 0.37 1.98 16 18 N -0.86 -50.57 11.74 21.66 0.25 -50.31 16 19 Si 0.97 45.56 29.59 68.60 2.03 47.59 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 C 0.04 1.66 5.87 44.99 0.26 1.93 16 24 C -0.16 -5.53 9.80 30.59 0.30 -5.23 16 25 C -0.19 -6.28 10.36 30.59 0.32 -5.96 16 26 H 0.13 1.19 7.81 -2.39 -0.02 1.17 16 27 H 0.09 1.60 7.34 -2.39 -0.02 1.58 16 28 H 0.08 1.64 7.11 -2.39 -0.02 1.62 16 29 H 0.19 2.00 7.88 -2.91 -0.02 1.98 16 30 H 0.43 1.27 8.75 -74.06 -0.65 0.62 16 31 H 0.16 3.45 8.00 -2.91 -0.02 3.42 16 32 H 0.07 3.07 7.34 -2.39 -0.02 3.05 16 33 H 0.11 3.74 6.31 -2.39 -0.02 3.73 16 34 H 0.10 3.39 6.59 -2.39 -0.02 3.38 16 35 H 0.08 3.15 8.11 -2.39 -0.02 3.13 16 36 H 0.26 14.72 8.32 -92.71 -0.77 13.95 16 37 H 0.13 4.17 6.96 -2.39 -0.02 4.15 16 38 H 0.08 3.26 6.72 -2.38 -0.02 3.24 16 39 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -83.06 343.99 3.14 -79.92 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.42 Total: 21.86 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.14 Total: 11.18 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -3.13 Total: -91.20 kcal Atomic # 8 Polarization: -68.04 SS G_CDS: -1.33 Total: -69.36 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -83.06 3.14 -79.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275654492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.812 kcal (2) G-P(sol) polarization free energy of solvation -83.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds