Wall clock time and date at job start Fri Apr 10 2020 17:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46985 * 2 1 4 4 C 1.53008 * 109.46798 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46908 * 55.00009 * 4 3 2 6 6 N 1.46501 * 109.46842 * 294.99736 * 4 3 2 7 7 C 1.34780 * 119.99510 * 155.00434 * 6 4 3 8 8 O 1.21590 * 120.00046 * 359.97438 * 7 6 4 9 9 C 1.47535 * 119.99849 * 180.02562 * 7 6 4 10 10 C 1.39666 * 120.19596 * 0.02562 * 9 7 6 11 11 C 1.37830 * 119.92216 * 179.97438 * 10 9 7 12 12 C 1.38580 * 120.32044 * 359.97438 * 11 10 9 13 13 C 1.38026 * 120.40073 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.07207 * 0.02562 * 13 12 11 15 15 O 1.35519 * 120.16246 * 180.02562 * 14 13 12 16 16 C 1.34818 * 117.00123 * 354.39673 * 15 14 13 17 17 H 1.08011 * 119.99422 * 5.06547 * 16 15 14 18 18 C 1.38693 * 120.00642 * 185.06428 * 16 15 14 19 19 N 1.31525 * 119.99570 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00271 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47084 * 90.00381 * 20 18 16 22 22 H 1.48500 * 109.47153 * 210.00044 * 20 18 16 23 23 H 1.48498 * 109.47115 * 330.00264 * 20 18 16 24 24 C 1.50697 * 109.46703 * 174.99837 * 4 3 2 25 25 N 1.34778 * 120.00067 * 299.99548 * 24 4 3 26 26 O 1.21280 * 119.99894 * 120.00403 * 24 4 3 27 27 H 1.08998 * 109.47192 * 59.99649 * 1 2 3 28 28 H 1.08997 * 109.47610 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46850 * 300.00464 * 1 2 3 30 30 H 1.09002 * 109.47162 * 239.99888 * 2 1 3 31 31 H 1.09002 * 109.47012 * 119.99615 * 2 1 3 32 32 H 1.08993 * 109.47406 * 60.00542 * 3 2 1 33 33 H 1.08993 * 109.46980 * 299.99416 * 3 2 1 34 34 H 0.96994 * 120.00085 * 335.00238 * 6 4 3 35 35 H 1.08003 * 120.04115 * 359.97438 * 10 9 7 36 36 H 1.07992 * 119.84383 * 180.02562 * 11 10 9 37 37 H 1.07999 * 119.79696 * 180.28209 * 12 11 10 38 38 H 1.07998 * 119.96126 * 180.02562 * 13 12 11 39 39 H 0.96998 * 119.99271 * 179.97438 * 19 18 16 40 40 H 0.96994 * 120.00125 * 0.02562 * 25 24 4 41 41 H 0.96995 * 119.99446 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 7 4.0588 0.8586 1.2509 7 6 5.2808 0.2921 1.2981 8 8 5.9774 0.2652 0.3018 9 6 5.7729 -0.2964 2.5583 10 6 4.9756 -0.2692 3.7047 11 6 5.4407 -0.8212 4.8789 12 6 6.6969 -1.4044 4.9284 13 6 7.4959 -1.4386 3.8034 14 6 7.0442 -0.8866 2.6123 15 8 7.8270 -0.9197 1.5066 16 6 9.0785 -1.3981 1.6566 17 1 9.3893 -1.8088 2.6060 18 6 9.9668 -1.3628 0.5921 19 7 9.5884 -0.8622 -0.5638 20 14 11.7010 -2.0251 0.8003 21 1 11.7252 -3.4680 0.4502 22 1 12.6250 -1.2830 -0.0946 23 1 12.1314 -1.8506 2.2108 24 6 4.0722 2.8579 -0.1245 25 7 3.7462 3.5967 -1.2036 26 8 4.7699 3.3323 0.7468 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.5030 0.8798 2.0456 35 1 3.9958 0.1838 3.6712 36 1 4.8230 -0.7998 5.7645 37 1 7.0510 -1.8385 5.8517 38 1 8.4734 -1.8953 3.8499 39 1 10.2098 -0.8373 -1.3082 40 1 3.1881 3.2174 -1.9004 41 1 4.0698 4.5075 -1.2835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288884599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:36 Heat of formation + Delta-G solvation = -81.225303 kcal Electronic energy + Delta-G solvation = -25335.549773 eV Core-core repulsion = 21602.074994 eV Total energy + Delta-G solvation = -3733.474779 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09191 -39.11862 -37.70983 -36.28122 -35.86258 -33.53855 -33.07309 -32.28545 -30.73728 -28.91727 -28.72333 -25.36583 -24.81679 -23.04675 -21.50326 -21.37635 -20.31525 -19.86422 -18.01535 -17.66382 -17.34042 -16.73246 -16.15860 -15.55117 -14.88124 -14.73470 -14.52775 -14.23512 -14.13423 -14.06383 -13.70264 -13.68198 -13.43499 -12.93070 -12.67543 -12.54371 -12.42997 -11.93502 -11.67285 -11.35515 -11.30495 -11.26658 -11.05688 -10.86100 -10.83918 -10.72701 -10.42369 -9.91298 -9.56829 -9.52301 -8.84050 -8.82491 -8.55072 -8.21153 -7.25106 -6.39655 -3.99340 1.77685 2.37954 2.82386 3.14500 3.16197 3.20674 3.36284 3.74572 3.93440 3.97783 4.57980 4.68685 4.77882 4.82769 5.11346 5.16794 5.23946 5.25078 5.33514 5.41043 5.53642 5.60165 5.65120 5.72070 5.82402 5.89925 6.01658 6.13763 6.16447 6.17650 6.61862 6.73589 6.79936 6.90945 6.96842 7.11599 7.29023 7.34036 7.42229 7.75144 7.96483 8.13364 8.42444 9.00056 9.13949 9.73278 10.74359 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.004461 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.798328 B = 6274.472720 C = 7366.588828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.120 4.120 4 C 0.133 3.867 5 H 0.114 0.886 6 N -0.720 5.720 7 C 0.562 3.438 8 O -0.500 6.500 9 C -0.223 4.223 10 C -0.037 4.037 11 C -0.231 4.231 12 C -0.051 4.051 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.124 6.124 16 C -0.403 4.403 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.833 5.833 20 Si 0.941 3.059 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.266 1.266 24 C 0.503 3.497 25 N -0.859 5.859 26 O -0.524 6.524 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.396 0.604 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.270 0.730 40 H 0.398 0.602 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.647 3.079 1.259 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.158 4.158 4 C 0.023 3.977 5 H 0.132 0.868 6 N -0.376 5.376 7 C 0.352 3.648 8 O -0.373 6.373 9 C -0.227 4.227 10 C -0.055 4.055 11 C -0.250 4.250 12 C -0.070 4.070 13 C -0.257 4.257 14 C 0.130 3.870 15 O -0.022 6.022 16 C -0.479 4.479 17 H 0.111 0.889 18 C -0.163 4.163 19 N -0.465 5.465 20 Si 0.765 3.235 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C 0.286 3.714 25 N -0.424 5.424 26 O -0.398 6.398 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.226 0.774 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -15.559 3.282 0.675 15.915 hybrid contribution 0.508 -0.011 0.178 0.539 sum -15.050 3.271 0.853 15.425 Atomic orbital electron populations 1.21768 0.95669 1.01783 1.01630 1.21544 0.95662 0.95737 1.03387 1.21854 0.91969 0.98628 1.03336 1.20734 0.94373 0.91252 0.91354 0.86790 1.45550 1.18994 1.61352 1.11656 1.18198 0.80231 0.77510 0.88821 1.90933 1.54467 1.56386 1.35536 1.18784 0.96265 1.13303 0.94382 1.20749 0.97116 0.95812 0.91868 1.20452 0.97964 1.08847 0.97709 1.20889 0.93530 0.95622 0.96917 1.21146 1.02500 1.08889 0.93211 1.19271 0.89982 0.90691 0.87012 1.84175 1.22802 1.68190 1.27069 1.21496 0.85909 1.40642 0.99865 0.88903 1.25376 0.99747 0.96651 0.94542 1.70139 1.35733 1.39164 1.01459 0.85732 0.80197 0.78796 0.78798 1.19776 1.20171 1.19066 1.21356 0.79818 0.88676 0.81548 1.43869 1.56509 1.17962 1.24066 1.90766 1.36251 1.72481 1.40337 0.92832 0.92596 0.92772 0.91393 0.91097 0.90868 0.90268 0.76916 0.87097 0.87288 0.87211 0.85098 0.91961 0.77407 0.77142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -1.12 5.82 -26.73 -0.16 -1.27 16 3 C -0.12 -1.07 4.70 -26.72 -0.13 -1.20 16 4 C 0.13 1.87 2.38 -69.08 -0.16 1.70 16 5 H 0.11 1.75 7.58 -51.93 -0.39 1.36 16 6 N -0.72 -12.08 4.01 -55.97 -0.22 -12.30 16 7 C 0.56 12.87 7.59 -12.47 -0.09 12.78 16 8 O -0.50 -14.03 14.83 -16.57 -0.25 -14.27 16 9 C -0.22 -5.06 5.89 -104.81 -0.62 -5.67 16 10 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 11 C -0.23 -3.94 10.03 -39.60 -0.40 -4.33 16 12 C -0.05 -0.93 10.03 -39.53 -0.40 -1.33 16 13 C -0.24 -5.29 9.16 -39.44 -0.36 -5.66 16 14 C 0.19 4.89 6.66 -38.60 -0.26 4.64 16 15 O -0.12 -3.77 7.84 -21.06 -0.17 -3.94 16 16 C -0.40 -11.71 9.49 30.90 0.29 -11.42 16 17 H 0.09 2.45 5.21 -52.48 -0.27 2.17 16 18 C 0.04 1.27 5.49 -17.51 -0.10 1.17 16 19 N -0.83 -25.66 13.67 55.48 0.76 -24.90 16 20 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 C 0.50 7.93 7.46 -10.99 -0.08 7.85 16 25 N -0.86 -9.06 8.74 31.22 0.27 -8.78 16 26 O -0.52 -11.09 17.16 5.56 0.10 -11.00 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.52 7.42 -51.93 -0.39 0.13 16 34 H 0.40 5.47 6.63 -40.82 -0.27 5.20 16 35 H 0.11 1.56 6.40 -52.48 -0.34 1.22 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.40 2.75 8.19 -40.82 -0.33 2.41 16 41 H 0.40 3.86 8.93 -40.82 -0.36 3.49 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -39.35 350.14 -6.87 -46.21 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -5.15 Total: 12.22 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.46 Total: -4.48 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.81 Total: -45.99 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.32 Total: -29.21 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -39.35 -6.87 -46.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288884599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.014 kcal (2) G-P(sol) polarization free energy of solvation -39.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds