Wall clock time and date at job start Fri Apr 10 2020 17:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46985 * 2 1 4 4 C 1.53008 * 109.46798 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46908 * 55.00009 * 4 3 2 6 6 N 1.46501 * 109.46842 * 294.99736 * 4 3 2 7 7 C 1.34780 * 119.99510 * 155.00434 * 6 4 3 8 8 O 1.21590 * 120.00046 * 359.97438 * 7 6 4 9 9 C 1.47535 * 119.99849 * 180.02562 * 7 6 4 10 10 C 1.39666 * 120.19596 * 0.02562 * 9 7 6 11 11 C 1.37830 * 119.92216 * 179.97438 * 10 9 7 12 12 C 1.38580 * 120.32044 * 359.97438 * 11 10 9 13 13 C 1.38026 * 120.40073 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.07207 * 0.02562 * 13 12 11 15 15 O 1.35519 * 120.16246 * 180.02562 * 14 13 12 16 16 C 1.34818 * 117.00123 * 354.39673 * 15 14 13 17 17 H 1.08011 * 119.99422 * 5.06547 * 16 15 14 18 18 C 1.38693 * 120.00642 * 185.06428 * 16 15 14 19 19 N 1.31525 * 119.99570 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00271 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47084 * 90.00381 * 20 18 16 22 22 H 1.48500 * 109.47153 * 210.00044 * 20 18 16 23 23 H 1.48498 * 109.47115 * 330.00264 * 20 18 16 24 24 C 1.50697 * 109.46703 * 174.99837 * 4 3 2 25 25 N 1.34778 * 120.00067 * 299.99548 * 24 4 3 26 26 O 1.21280 * 119.99894 * 120.00403 * 24 4 3 27 27 H 1.08998 * 109.47192 * 59.99649 * 1 2 3 28 28 H 1.08997 * 109.47610 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46850 * 300.00464 * 1 2 3 30 30 H 1.09002 * 109.47162 * 239.99888 * 2 1 3 31 31 H 1.09002 * 109.47012 * 119.99615 * 2 1 3 32 32 H 1.08993 * 109.47406 * 60.00542 * 3 2 1 33 33 H 1.08993 * 109.46980 * 299.99416 * 3 2 1 34 34 H 0.96994 * 120.00085 * 335.00238 * 6 4 3 35 35 H 1.08003 * 120.04115 * 359.97438 * 10 9 7 36 36 H 1.07992 * 119.84383 * 180.02562 * 11 10 9 37 37 H 1.07999 * 119.79696 * 180.28209 * 12 11 10 38 38 H 1.07998 * 119.96126 * 180.02562 * 13 12 11 39 39 H 0.96998 * 119.99271 * 179.97438 * 19 18 16 40 40 H 0.96994 * 120.00125 * 0.02562 * 25 24 4 41 41 H 0.96995 * 119.99446 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 7 4.0588 0.8586 1.2509 7 6 5.2808 0.2921 1.2981 8 8 5.9774 0.2652 0.3018 9 6 5.7729 -0.2964 2.5583 10 6 4.9756 -0.2692 3.7047 11 6 5.4407 -0.8212 4.8789 12 6 6.6969 -1.4044 4.9284 13 6 7.4959 -1.4386 3.8034 14 6 7.0442 -0.8866 2.6123 15 8 7.8270 -0.9197 1.5066 16 6 9.0785 -1.3981 1.6566 17 1 9.3893 -1.8088 2.6060 18 6 9.9668 -1.3628 0.5921 19 7 9.5884 -0.8622 -0.5638 20 14 11.7010 -2.0251 0.8003 21 1 11.7252 -3.4680 0.4502 22 1 12.6250 -1.2830 -0.0946 23 1 12.1314 -1.8506 2.2108 24 6 4.0722 2.8579 -0.1245 25 7 3.7462 3.5967 -1.2036 26 8 4.7699 3.3323 0.7468 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.5030 0.8798 2.0456 35 1 3.9958 0.1838 3.6712 36 1 4.8230 -0.7998 5.7645 37 1 7.0510 -1.8385 5.8517 38 1 8.4734 -1.8953 3.8499 39 1 10.2098 -0.8373 -1.3082 40 1 3.1881 3.2174 -1.9004 41 1 4.0698 4.5075 -1.2835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288884599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:35 Heat of formation + Delta-G solvation = -112.977284 kcal Electronic energy + Delta-G solvation = -25336.926642 eV Core-core repulsion = 21602.074994 eV Total energy + Delta-G solvation = -3734.851648 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.58147 -40.71389 -39.40519 -38.01920 -37.02241 -34.80102 -34.35975 -34.22087 -32.23470 -30.57531 -29.92421 -27.37319 -25.80141 -24.63506 -23.17411 -22.19881 -21.72320 -21.31762 -19.85318 -19.29252 -18.58715 -18.03511 -17.81727 -16.89619 -16.33474 -16.15845 -15.93503 -15.85635 -15.67986 -15.52359 -15.27309 -15.22348 -14.58003 -14.41551 -14.26369 -14.08027 -13.55347 -13.35896 -13.00751 -12.78691 -12.67528 -12.52876 -12.36304 -12.22835 -12.12910 -11.99815 -11.55047 -11.42291 -11.28006 -10.83433 -10.69566 -10.63897 -10.09245 -9.78800 -9.03617 -8.44857 -6.15812 0.12631 0.72785 1.31144 1.43240 1.50693 1.57183 1.97474 2.15634 2.22208 2.66388 2.89258 3.23346 3.47337 3.63910 3.89112 3.98097 4.03819 4.08811 4.25492 4.31047 4.40038 4.52355 4.63104 4.65951 4.79413 4.89599 4.98140 5.02452 5.07077 5.13650 5.30673 5.32258 5.45514 5.48272 5.52100 5.60617 5.69081 5.86996 5.95883 6.17139 6.41079 6.64399 6.94299 7.31157 7.47401 7.80597 8.75954 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.004461 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.798328 B = 6274.472720 C = 7366.588828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.106 4.106 4 C 0.128 3.872 5 H 0.097 0.903 6 N -0.697 5.697 7 C 0.555 3.445 8 O -0.566 6.566 9 C -0.245 4.245 10 C -0.030 4.030 11 C -0.200 4.200 12 C -0.040 4.040 13 C -0.258 4.258 14 C 0.148 3.852 15 O -0.189 6.189 16 C -0.429 4.429 17 H 0.107 0.893 18 C -0.023 4.023 19 N -0.906 5.906 20 Si 1.023 2.977 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.249 1.249 24 C 0.497 3.503 25 N -0.832 5.832 26 O -0.587 6.587 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.412 0.588 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.270 0.730 40 H 0.419 0.581 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.671 3.122 4.232 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.144 4.144 4 C 0.019 3.981 5 H 0.114 0.886 6 N -0.352 5.352 7 C 0.346 3.654 8 O -0.445 6.445 9 C -0.250 4.250 10 C -0.049 4.049 11 C -0.218 4.218 12 C -0.058 4.058 13 C -0.277 4.277 14 C 0.093 3.907 15 O -0.091 6.091 16 C -0.505 4.505 17 H 0.124 0.876 18 C -0.222 4.222 19 N -0.542 5.542 20 Si 0.841 3.159 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.172 1.172 24 C 0.281 3.719 25 N -0.397 5.397 26 O -0.466 6.466 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.250 0.750 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.173 0.827 38 H 0.141 0.859 39 H 0.079 0.921 40 H 0.251 0.749 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -18.720 3.341 3.680 19.369 hybrid contribution 1.036 0.053 -0.483 1.144 sum -17.684 3.394 3.197 18.289 Atomic orbital electron populations 1.21725 0.93696 1.02172 1.02738 1.21541 0.97274 0.95270 1.02344 1.21887 0.87382 0.99373 1.05711 1.21030 0.97805 0.89837 0.89435 0.88565 1.45296 1.17004 1.59450 1.13432 1.18488 0.81340 0.77398 0.88222 1.90905 1.56744 1.59156 1.37676 1.19302 0.96160 1.13289 0.96216 1.21293 0.98257 0.94933 0.90407 1.21178 0.97326 1.04563 0.98775 1.21440 0.93347 0.94120 0.96897 1.21301 1.03251 1.09527 0.93628 1.20092 0.91017 0.91924 0.87687 1.84178 1.23773 1.71656 1.29524 1.22059 0.86542 1.41128 1.00770 0.87620 1.26780 1.04773 0.96810 0.93811 1.70335 1.37752 1.43168 1.02898 0.84553 0.73462 0.78368 0.79493 1.18359 1.19765 1.17230 1.21626 0.79084 0.89316 0.81863 1.43619 1.55296 1.17900 1.22883 1.90739 1.39174 1.73837 1.42900 0.91563 0.92655 0.91810 0.92439 0.92392 0.89276 0.87008 0.74970 0.82495 0.81723 0.82705 0.85852 0.92080 0.74950 0.76217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.13 -2.00 5.82 30.60 0.18 -1.82 16 3 C -0.11 -1.62 4.70 30.60 0.14 -1.48 16 4 C 0.13 3.60 2.38 44.25 0.11 3.70 16 5 H 0.10 3.11 7.58 -2.39 -0.02 3.09 16 6 N -0.70 -23.41 4.01 -449.25 -1.80 -25.21 16 7 C 0.56 26.66 7.59 86.69 0.66 27.31 16 8 O -0.57 -34.56 14.83 16.90 0.25 -34.31 16 9 C -0.24 -11.34 5.89 -19.99 -0.12 -11.46 16 10 C -0.03 -1.00 9.53 22.52 0.21 -0.78 16 11 C -0.20 -5.71 10.03 22.25 0.22 -5.49 16 12 C -0.04 -1.31 10.03 22.30 0.22 -1.09 16 13 C -0.26 -11.53 9.16 22.36 0.20 -11.33 16 14 C 0.15 8.00 6.66 22.91 0.15 8.16 16 15 O -0.19 -12.46 7.84 0.82 0.01 -12.46 16 16 C -0.43 -26.82 9.49 67.93 0.64 -26.18 16 17 H 0.11 5.93 5.21 -2.91 -0.02 5.91 16 18 C -0.02 -1.39 5.49 84.85 0.47 -0.92 16 19 N -0.91 -60.65 13.67 21.62 0.30 -60.36 16 20 Si 1.02 45.44 29.55 68.60 2.03 47.46 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 24 C 0.50 15.72 7.46 87.66 0.65 16.37 16 25 N -0.83 -16.64 8.74 -173.53 -1.52 -18.15 16 26 O -0.59 -25.53 17.16 -3.03 -0.05 -25.59 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.06 7.75 -2.39 -0.02 1.04 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 1.04 7.42 -2.39 -0.02 1.02 16 34 H 0.41 10.58 6.63 -92.71 -0.61 9.96 16 35 H 0.16 3.60 6.40 -2.91 -0.02 3.58 16 36 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 38 H 0.12 5.56 5.64 -2.91 -0.02 5.55 16 39 H 0.27 16.53 8.31 -92.71 -0.77 15.76 16 40 H 0.42 4.90 8.19 -92.71 -0.76 4.15 16 41 H 0.41 7.45 8.93 -92.71 -0.83 6.62 16 Total: -1.00 -100.21 350.14 2.57 -97.64 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -1.10 Total: 36.86 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 4.46 Total: -5.89 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -3.02 Total: -103.72 kcal Atomic # 8 Polarization: -72.56 SS G_CDS: 0.20 Total: -72.35 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -100.21 2.57 -97.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288884599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.338 kcal (2) G-P(sol) polarization free energy of solvation -100.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds