Wall clock time and date at job start Fri Apr 10 2020 17:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00417 * 2 1 4 4 H 1.08995 * 109.46699 * 5.00537 * 3 2 1 5 5 C 1.53003 * 109.46597 * 125.00500 * 3 2 1 6 6 O 1.42894 * 109.47512 * 55.00173 * 5 3 2 7 7 N 1.46492 * 109.47222 * 245.00573 * 3 2 1 8 8 C 1.34777 * 120.00434 * 85.00007 * 7 3 2 9 9 O 1.21591 * 119.99393 * 0.02562 * 8 7 3 10 10 N 1.34768 * 120.00297 * 179.97438 * 8 7 3 11 11 C 1.46503 * 120.00179 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47448 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.93217 * 269.73027 * 12 11 10 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31557 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47303 * 60.00249 * 21 19 17 23 23 H 1.48499 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47359 * 299.99968 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 H 1.07995 * 120.00700 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99538 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99538 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46494 * 175.00576 * 5 3 2 31 31 H 1.08998 * 109.46960 * 294.99832 * 5 3 2 32 32 H 0.96697 * 114.00565 * 179.97438 * 6 5 3 33 33 H 0.97007 * 119.99685 * 265.00036 * 7 3 2 34 34 H 0.97000 * 120.00448 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.46848 * 59.99850 * 11 10 8 36 36 H 1.09001 * 109.46885 * 300.00464 * 11 10 8 37 37 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 38 38 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 39 39 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 41 41 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3587 2.1316 0.0897 5 6 3.0352 1.3328 1.1816 6 8 3.8841 0.1847 1.1274 7 7 2.8132 1.4362 -1.2518 8 6 2.2099 1.9332 -2.3497 9 8 1.0435 2.2733 -2.3010 10 7 2.8996 2.0543 -3.5012 11 6 2.2440 2.5951 -4.6945 12 6 3.2257 2.6245 -5.8374 13 6 4.0070 3.7462 -6.0473 14 6 4.9116 3.7740 -7.0903 15 6 5.0280 2.6785 -7.9360 16 8 5.9118 2.7054 -8.9661 17 6 6.0567 1.5696 -9.6780 18 1 5.4250 0.7184 -9.4713 19 6 7.0168 1.4944 -10.6755 20 7 7.7861 2.5314 -10.9276 21 14 7.2181 -0.0795 -11.6614 22 1 5.9467 -0.3900 -12.3631 23 1 8.3034 0.0970 -12.6595 24 1 7.5637 -1.1964 -10.7458 25 6 4.2380 1.5559 -7.7261 26 6 3.3392 1.5320 -6.6779 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 3.6425 2.2365 1.1313 31 1 2.4724 1.3248 2.1150 32 1 4.5275 0.1368 1.8477 33 1 3.7438 1.1652 -1.2905 34 1 3.8302 1.7833 -3.5399 35 1 1.8939 3.6068 -4.4896 36 1 1.3959 1.9641 -4.9605 37 1 3.9124 4.5997 -5.3923 38 1 5.5246 4.6485 -7.2511 39 1 8.4581 2.4786 -11.6252 40 1 4.3259 0.7026 -8.3823 41 1 2.7243 0.6593 -6.5143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291160668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:42 Heat of formation + Delta-G solvation = -60.653488 kcal Electronic energy + Delta-G solvation = -23709.827701 eV Core-core repulsion = 19977.244983 eV Total energy + Delta-G solvation = -3732.582718 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.10798 -39.11151 -37.86164 -36.83491 -35.28467 -34.25380 -32.78678 -32.30942 -30.27718 -29.94297 -28.57625 -25.84082 -24.66929 -23.05140 -22.04051 -20.99041 -20.60203 -20.14369 -18.48070 -18.05250 -17.69089 -17.05352 -16.61915 -15.66453 -15.12726 -15.00316 -14.78050 -14.62442 -14.53556 -14.29624 -13.88641 -13.69888 -13.36863 -13.33696 -12.81807 -12.76620 -12.62633 -12.09803 -11.82041 -11.69268 -11.43613 -11.37489 -10.94285 -10.78210 -10.68276 -10.52299 -10.49826 -10.18634 -9.62066 -9.42321 -9.26767 -8.90333 -8.72941 -8.27208 -7.32097 -6.52401 -4.11355 1.94631 2.13962 2.14988 2.98598 3.09564 3.11465 3.13277 3.28895 3.84272 3.90987 4.30940 4.51234 4.59894 4.67773 4.93177 5.02509 5.10454 5.16230 5.18256 5.26848 5.46815 5.52744 5.68743 5.78994 5.84143 5.95684 6.13269 6.36187 6.36836 6.47795 6.59449 6.60653 6.65507 6.81680 6.93516 7.03104 7.16931 7.17793 7.29374 7.36074 7.72696 7.92281 8.10382 8.68018 8.92875 9.61155 10.65072 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.002340 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.388096 B =11963.773678 C =12259.865151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.166 4.166 3 C 0.195 3.805 4 H 0.101 0.899 5 C 0.071 3.929 6 O -0.568 6.568 7 N -0.739 5.739 8 C 0.701 3.299 9 O -0.597 6.597 10 N -0.738 5.738 11 C 0.198 3.802 12 C -0.214 4.214 13 C -0.054 4.054 14 C -0.196 4.196 15 C 0.160 3.840 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.237 4.237 26 C -0.050 4.050 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.381 0.619 33 H 0.400 0.600 34 H 0.397 0.603 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.272 0.728 40 H 0.128 0.872 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 -3.371 21.698 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.089 3.911 4 H 0.119 0.881 5 C -0.007 4.007 6 O -0.374 6.374 7 N -0.395 5.395 8 C 0.401 3.599 9 O -0.476 6.476 10 N -0.393 5.393 11 C 0.076 3.924 12 C -0.215 4.215 13 C -0.073 4.073 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.076 6.076 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.164 4.164 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.256 4.256 26 C -0.069 4.069 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.228 0.772 33 H 0.234 0.766 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.583 -2.902 20.908 22.787 hybrid contribution 1.306 -1.031 -0.118 1.668 sum -7.277 -3.934 20.790 22.376 Atomic orbital electron populations 1.23903 0.95955 1.01917 0.98866 1.23126 0.95835 0.98579 1.00978 1.19976 0.92420 0.96628 0.82029 0.88122 1.22469 0.92396 0.88394 0.97487 1.86498 1.51540 1.45374 1.53977 1.45122 1.15286 1.69414 1.09675 1.16043 0.84973 0.78462 0.80382 1.90892 1.15329 1.56889 1.84444 1.45502 1.15270 1.68952 1.09542 1.19817 0.93216 0.98432 0.80970 1.19235 1.04735 0.96779 1.00766 1.20533 0.94041 0.96636 0.96041 1.20214 1.04310 0.99006 0.97984 1.19440 0.89279 0.93206 0.87518 1.83978 1.51479 1.36377 1.35764 1.21308 1.19779 0.90769 1.15129 0.88980 1.25314 0.94951 0.99081 0.97095 1.70027 1.19518 1.29399 1.30483 0.85766 0.78548 0.79963 0.79096 1.19424 1.20216 1.19432 1.21157 1.01716 1.00459 1.02310 1.20654 0.96176 0.96463 0.93572 0.88562 0.88297 0.86950 0.92669 0.92023 0.77179 0.76583 0.76899 0.91779 0.91839 0.86962 0.86400 0.91836 0.85444 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 14.32 29.02 0.42 -1.25 16 2 C -0.17 -1.68 8.67 -36.02 -0.31 -1.99 16 3 C 0.19 1.85 2.73 -69.08 -0.19 1.66 16 4 H 0.10 1.05 7.23 -51.93 -0.38 0.67 16 5 C 0.07 0.45 6.78 37.16 0.25 0.70 16 6 O -0.57 -3.68 12.74 -35.23 -0.45 -4.13 16 7 N -0.74 -7.91 5.05 -59.82 -0.30 -8.21 16 8 C 0.70 9.80 8.52 -86.93 -0.74 9.05 16 9 O -0.60 -10.37 16.01 5.29 0.08 -10.28 16 10 N -0.74 -9.69 5.55 -66.41 -0.37 -10.06 16 11 C 0.20 2.88 5.80 -5.19 -0.03 2.85 16 12 C -0.21 -3.47 5.25 -104.57 -0.55 -4.02 16 13 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 14 C -0.20 -3.96 9.99 -39.40 -0.39 -4.35 16 15 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 16 O -0.17 -4.82 9.76 0.05 0.00 -4.82 16 17 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.73 13.67 55.48 0.76 -23.98 16 21 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.24 -4.95 9.17 -39.40 -0.36 -5.31 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 27 H 0.10 0.83 8.06 -52.49 -0.42 0.40 16 28 H 0.10 1.01 7.84 -52.48 -0.41 0.59 16 29 H 0.11 1.17 7.86 -52.48 -0.41 0.75 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.38 0.84 9.12 45.56 0.42 1.25 16 33 H 0.40 3.64 8.40 -40.82 -0.34 3.29 16 34 H 0.40 4.66 8.48 -40.82 -0.35 4.31 16 35 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 38 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -33.07 358.64 -7.19 -40.26 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -4.55 Total: 11.95 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.74 Total: -11.19 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.09 Total: -42.25 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.36 Total: -19.24 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.07 -7.19 -40.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291160668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.397 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds