Wall clock time and date at job start Fri Apr 10 2020 17:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00417 * 2 1 4 4 H 1.08995 * 109.46699 * 5.00537 * 3 2 1 5 5 C 1.53003 * 109.46597 * 125.00500 * 3 2 1 6 6 O 1.42894 * 109.47512 * 55.00173 * 5 3 2 7 7 N 1.46492 * 109.47222 * 245.00573 * 3 2 1 8 8 C 1.34777 * 120.00434 * 85.00007 * 7 3 2 9 9 O 1.21591 * 119.99393 * 0.02562 * 8 7 3 10 10 N 1.34768 * 120.00297 * 179.97438 * 8 7 3 11 11 C 1.46503 * 120.00179 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47448 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.93217 * 269.73027 * 12 11 10 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31557 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47303 * 60.00249 * 21 19 17 23 23 H 1.48499 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47359 * 299.99968 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 H 1.07995 * 120.00700 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99538 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99538 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46494 * 175.00576 * 5 3 2 31 31 H 1.08998 * 109.46960 * 294.99832 * 5 3 2 32 32 H 0.96697 * 114.00565 * 179.97438 * 6 5 3 33 33 H 0.97007 * 119.99685 * 265.00036 * 7 3 2 34 34 H 0.97000 * 120.00448 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.46848 * 59.99850 * 11 10 8 36 36 H 1.09001 * 109.46885 * 300.00464 * 11 10 8 37 37 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 38 38 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 39 39 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 41 41 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3587 2.1316 0.0897 5 6 3.0352 1.3328 1.1816 6 8 3.8841 0.1847 1.1274 7 7 2.8132 1.4362 -1.2518 8 6 2.2099 1.9332 -2.3497 9 8 1.0435 2.2733 -2.3010 10 7 2.8996 2.0543 -3.5012 11 6 2.2440 2.5951 -4.6945 12 6 3.2257 2.6245 -5.8374 13 6 4.0070 3.7462 -6.0473 14 6 4.9116 3.7740 -7.0903 15 6 5.0280 2.6785 -7.9360 16 8 5.9118 2.7054 -8.9661 17 6 6.0567 1.5696 -9.6780 18 1 5.4250 0.7184 -9.4713 19 6 7.0168 1.4944 -10.6755 20 7 7.7861 2.5314 -10.9276 21 14 7.2181 -0.0795 -11.6614 22 1 5.9467 -0.3900 -12.3631 23 1 8.3034 0.0970 -12.6595 24 1 7.5637 -1.1964 -10.7458 25 6 4.2380 1.5559 -7.7261 26 6 3.3392 1.5320 -6.6779 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 3.6425 2.2365 1.1313 31 1 2.4724 1.3248 2.1150 32 1 4.5275 0.1368 1.8477 33 1 3.7438 1.1652 -1.2905 34 1 3.8302 1.7833 -3.5399 35 1 1.8939 3.6068 -4.4896 36 1 1.3959 1.9641 -4.9605 37 1 3.9124 4.5997 -5.3923 38 1 5.5246 4.6485 -7.2511 39 1 8.4581 2.4786 -11.6252 40 1 4.3259 0.7026 -8.3823 41 1 2.7243 0.6593 -6.5143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291160668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:41 Heat of formation + Delta-G solvation = -86.556571 kcal Electronic energy + Delta-G solvation = -23710.950943 eV Core-core repulsion = 19977.244983 eV Total energy + Delta-G solvation = -3733.705960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20602 -40.71203 -38.77194 -38.23078 -36.04227 -35.49624 -34.29869 -33.62039 -31.83577 -31.28712 -29.38648 -27.61096 -26.11698 -23.77557 -23.64011 -22.23747 -21.92799 -20.91566 -19.89130 -19.48455 -18.80574 -18.23170 -17.55829 -16.73429 -16.46558 -16.22460 -16.09581 -15.84616 -15.60577 -15.51382 -15.26917 -15.19387 -14.75382 -14.38681 -14.28740 -14.05697 -13.65430 -13.34392 -13.26421 -13.01178 -12.54223 -12.46367 -12.38628 -12.21402 -12.19869 -12.14119 -11.42549 -11.20352 -10.91085 -10.79645 -10.39972 -10.31412 -9.81899 -9.72575 -9.01566 -8.48110 -6.16405 0.52886 0.58184 1.24054 1.35903 1.45687 1.51672 1.99869 2.17487 2.21157 2.81513 3.14067 3.39955 3.48743 3.51207 3.85209 3.89536 4.03978 4.06251 4.17934 4.31273 4.47792 4.57146 4.57544 4.62019 4.74885 4.80925 4.83059 5.04553 5.06604 5.14551 5.27053 5.48708 5.51687 5.54447 5.69234 5.70762 5.76349 5.82986 6.01483 6.07703 6.16850 6.94096 6.96595 7.12768 7.62780 7.75755 8.74461 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.002340 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.388096 B =11963.773678 C =12259.865151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.171 4.171 3 C 0.187 3.813 4 H 0.090 0.910 5 C 0.079 3.921 6 O -0.585 6.585 7 N -0.726 5.726 8 C 0.700 3.300 9 O -0.631 6.631 10 N -0.732 5.732 11 C 0.205 3.795 12 C -0.181 4.181 13 C -0.042 4.042 14 C -0.204 4.204 15 C 0.122 3.878 16 O -0.228 6.228 17 C -0.415 4.415 18 H 0.103 0.897 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 1.017 2.983 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.244 4.244 26 C -0.046 4.046 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.400 0.600 33 H 0.409 0.591 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.148 0.852 38 H 0.116 0.884 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 -4.543 24.091 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.190 4.190 3 C 0.082 3.918 4 H 0.108 0.892 5 C 0.001 3.999 6 O -0.394 6.394 7 N -0.382 5.382 8 C 0.400 3.600 9 O -0.513 6.513 10 N -0.388 5.388 11 C 0.081 3.919 12 C -0.182 4.182 13 C -0.060 4.060 14 C -0.223 4.223 15 C 0.071 3.929 16 O -0.134 6.134 17 C -0.491 4.491 18 H 0.120 0.880 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.836 3.164 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.263 4.263 26 C -0.064 4.064 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.250 0.750 33 H 0.245 0.755 34 H 0.241 0.759 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.166 0.834 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.773 -4.090 23.385 25.673 hybrid contribution 1.439 -0.602 -0.503 1.639 sum -8.333 -4.693 22.882 24.801 Atomic orbital electron populations 1.24012 0.96113 1.02221 0.98715 1.23179 0.95933 0.98768 1.01143 1.20147 0.93180 0.95899 0.82542 0.89216 1.22369 0.92199 0.88830 0.96509 1.86440 1.52190 1.45397 1.55350 1.45060 1.15682 1.68207 1.09218 1.16150 0.84538 0.78400 0.80956 1.90876 1.16933 1.58459 1.85041 1.45259 1.15597 1.68881 1.09018 1.19699 0.92454 0.99133 0.80565 1.19498 1.03076 0.95579 1.00093 1.20878 0.92332 0.97925 0.94913 1.20452 1.05173 0.98251 0.98461 1.19995 0.89741 0.95219 0.87901 1.83948 1.54198 1.37166 1.38136 1.21791 1.20360 0.91299 1.15617 0.87962 1.26575 0.94354 1.02856 0.98113 1.70172 1.21185 1.32148 1.32143 0.84666 0.78875 0.75364 0.77456 1.18238 1.19702 1.18098 1.21236 1.02218 0.99560 1.03285 1.20933 0.95290 0.97898 0.92286 0.87478 0.88874 0.87126 0.91526 0.90310 0.74953 0.75458 0.75858 0.91081 0.91693 0.83434 0.86598 0.91782 0.86206 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 14.32 67.78 0.97 -2.21 16 2 C -0.17 -3.16 8.67 25.65 0.22 -2.94 16 3 C 0.19 3.17 2.73 44.25 0.12 3.29 16 4 H 0.09 1.74 7.23 -2.39 -0.02 1.72 16 5 C 0.08 0.78 6.78 71.98 0.49 1.26 16 6 O -0.58 -5.94 12.74 -148.98 -1.90 -7.83 16 7 N -0.73 -13.72 5.05 -461.42 -2.33 -16.05 16 8 C 0.70 17.72 8.52 179.06 1.53 19.25 16 9 O -0.63 -20.66 16.01 -4.00 -0.06 -20.73 16 10 N -0.73 -16.79 5.55 -482.29 -2.68 -19.46 16 11 C 0.20 5.19 5.80 85.63 0.50 5.69 16 12 C -0.18 -5.30 5.25 -19.83 -0.10 -5.41 16 13 C -0.04 -1.31 9.69 22.25 0.22 -1.09 16 14 C -0.20 -8.21 9.99 22.39 0.22 -7.98 16 15 C 0.12 5.85 6.65 22.58 0.15 6.00 16 16 O -0.23 -13.40 9.76 -22.74 -0.22 -13.62 16 17 C -0.41 -23.61 9.49 67.92 0.64 -22.97 16 18 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 19 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 20 N -0.92 -55.54 13.67 21.61 0.30 -55.25 16 21 Si 1.02 42.04 29.55 68.60 2.03 44.06 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 25 C -0.24 -10.12 9.17 22.39 0.21 -9.92 16 26 C -0.05 -1.49 9.69 22.25 0.22 -1.27 16 27 H 0.11 1.68 8.06 -2.91 -0.02 1.65 16 28 H 0.09 1.82 7.84 -2.91 -0.02 1.79 16 29 H 0.11 2.09 7.86 -2.91 -0.02 2.07 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.40 0.59 9.12 -74.06 -0.68 -0.09 16 33 H 0.41 6.26 8.40 -92.70 -0.78 5.48 16 34 H 0.41 8.06 8.48 -92.71 -0.79 7.28 16 35 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 36 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 37 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 41 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -75.40 358.64 -0.18 -75.58 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -1.16 Total: 32.30 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 5.84 Total: -19.00 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -4.71 Total: -90.76 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -2.18 Total: -42.18 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -75.40 -0.18 -75.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291160668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.976 kcal (2) G-P(sol) polarization free energy of solvation -75.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds