Wall clock time and date at job start Fri Apr 10 2020 17:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47029 * 2 1 4 4 H 1.08997 * 109.47061 * 304.99720 * 3 2 1 5 5 N 1.46502 * 109.47066 * 64.99738 * 3 2 1 6 6 C 1.34773 * 120.00145 * 274.99857 * 5 3 2 7 7 O 1.21278 * 120.00009 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99901 * 179.97438 * 6 5 3 9 9 C 1.50695 * 109.46921 * 179.97438 * 8 6 5 10 10 C 1.38327 * 119.96983 * 269.72858 * 9 8 6 11 11 C 1.38277 * 120.13704 * 179.76844 * 10 9 8 12 12 C 1.38122 * 120.07087 * 0.50874 * 11 10 9 13 13 C 1.38854 * 119.93061 * 359.74085 * 12 11 10 14 14 O 1.35754 * 120.06973 * 179.97438 * 13 12 11 15 15 C 1.34831 * 116.99655 * 354.49322 * 14 13 12 16 16 H 1.07998 * 120.00346 * 5.05077 * 15 14 13 17 17 C 1.38658 * 119.99588 * 185.06179 * 15 14 13 18 18 N 1.31558 * 120.00215 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99808 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47598 * 89.99446 * 19 17 15 21 21 H 1.48499 * 109.47129 * 209.99565 * 19 17 15 22 22 H 1.48500 * 109.46912 * 329.99218 * 19 17 15 23 23 C 1.38083 * 119.96439 * 90.00332 * 9 8 6 24 24 C 1.50698 * 109.47046 * 184.99834 * 3 2 1 25 25 N 1.34778 * 119.99851 * 60.27337 * 24 3 2 26 26 O 1.21280 * 120.00075 * 239.99787 * 24 3 2 27 27 H 1.09005 * 109.47522 * 300.00043 * 1 2 3 28 28 H 1.09001 * 109.47099 * 60.00209 * 1 2 3 29 29 H 1.09001 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47218 * 239.99921 * 2 1 3 31 31 H 1.09001 * 109.47099 * 119.99791 * 2 1 3 32 32 H 0.97001 * 119.99409 * 95.00453 * 5 3 2 33 33 H 1.08993 * 109.47291 * 300.00088 * 8 6 5 34 34 H 1.09006 * 109.47031 * 60.00530 * 8 6 5 35 35 H 1.08000 * 119.92845 * 359.97438 * 10 9 8 36 36 H 1.08001 * 119.96414 * 180.24698 * 11 10 9 37 37 H 1.08002 * 120.03231 * 179.72642 * 12 11 10 38 38 H 0.97000 * 120.00032 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.03242 * 359.95275 * 23 9 8 40 40 H 0.97007 * 119.99814 * 179.72661 * 25 24 3 41 41 H 0.97004 * 120.00040 * 359.72435 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6523 2.0976 1.2518 6 6 0.4351 2.6645 1.3669 7 8 -0.3396 2.6320 0.4344 8 6 0.0361 3.3377 2.6548 9 6 -1.3612 3.8863 2.5230 10 6 -1.5566 5.1764 2.0638 11 6 -2.8375 5.6816 1.9369 12 6 -3.9257 4.9026 2.2785 13 6 -3.7327 3.6090 2.7446 14 8 -4.8002 2.8410 3.0816 15 6 -6.0125 3.4302 3.0497 16 1 -6.1115 4.4428 2.6873 17 6 -7.1322 2.7362 3.4823 18 7 -7.0118 1.5027 3.9235 19 14 -8.8120 3.5523 3.4374 20 1 -9.4580 3.2837 2.1276 21 1 -9.6578 3.0044 4.5281 22 1 -8.6554 5.0175 3.6210 23 6 -2.4450 3.1025 2.8660 24 6 3.5419 1.4444 -0.1238 25 7 4.1295 0.8961 -1.2057 26 8 4.2216 1.9436 0.7478 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.2719 2.1232 1.9977 33 1 0.0671 2.6131 3.4684 34 1 0.7275 4.1531 2.8679 35 1 -0.7071 5.7892 1.8007 36 1 -2.9870 6.6879 1.5743 37 1 -4.9257 5.2994 2.1833 38 1 -7.7952 1.0171 4.2258 39 1 -2.2917 2.0965 3.2280 40 1 5.0961 0.9008 -1.2873 41 1 3.5858 0.4967 -1.9028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291457551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:44 Heat of formation + Delta-G solvation = -112.658019 kcal Electronic energy + Delta-G solvation = -24565.986215 eV Core-core repulsion = 20831.148412 eV Total energy + Delta-G solvation = -3734.837803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.58320 -40.77200 -39.99210 -38.21180 -36.35748 -34.84819 -34.33157 -33.71615 -32.82373 -30.86213 -29.18487 -27.75685 -27.11390 -23.39526 -23.23482 -22.85766 -21.57569 -21.28096 -19.54792 -19.05224 -18.60966 -18.29320 -17.18102 -16.92189 -16.80054 -16.54476 -16.31029 -16.06171 -15.62125 -15.48237 -15.11668 -14.94459 -14.92121 -14.39206 -14.16429 -13.96945 -13.60044 -13.49167 -13.07735 -12.96134 -12.75785 -12.55194 -12.42014 -12.36630 -12.20519 -12.09548 -11.88548 -11.18899 -11.11332 -10.91167 -10.77915 -10.71618 -10.08685 -9.61835 -8.95967 -8.45773 -6.14120 0.53756 0.77841 1.34681 1.44334 1.46018 1.52535 1.68709 1.99453 2.18649 2.61033 2.86976 3.19668 3.45975 3.74497 3.82284 3.88083 4.04502 4.10989 4.13871 4.33692 4.37029 4.44717 4.55674 4.60863 4.66283 4.75723 4.81257 4.97587 5.07778 5.11179 5.14606 5.32567 5.39130 5.45977 5.67082 5.74759 5.77708 5.83678 6.04356 6.24776 6.33559 6.53689 6.98914 7.21850 7.28957 7.80833 8.77824 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.002881 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.309483 B = 9715.344652 C =10395.365786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.124 3.876 4 H 0.111 0.889 5 N -0.710 5.710 6 C 0.521 3.479 7 O -0.557 6.557 8 C -0.094 4.094 9 C -0.023 4.023 10 C -0.180 4.180 11 C -0.073 4.073 12 C -0.247 4.247 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.019 2.981 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.253 1.253 23 C -0.189 4.189 24 C 0.522 3.478 25 N -0.827 5.827 26 O -0.577 6.577 27 H 0.033 0.967 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.416 0.584 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.272 0.728 39 H 0.106 0.894 40 H 0.414 0.586 41 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.973 0.145 -9.334 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C 0.016 3.984 4 H 0.129 0.871 5 N -0.365 5.365 6 C 0.308 3.692 7 O -0.434 6.434 8 C -0.133 4.133 9 C -0.023 4.023 10 C -0.199 4.199 11 C -0.091 4.091 12 C -0.266 4.266 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.490 4.490 16 H 0.117 0.883 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.838 3.162 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.177 1.177 23 C -0.209 4.209 24 C 0.306 3.694 25 N -0.392 5.392 26 O -0.456 6.456 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.254 0.746 33 H 0.137 0.863 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.246 0.754 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 21.572 0.075 -9.230 23.464 hybrid contribution -0.793 -0.176 0.058 0.814 sum 20.779 -0.100 -9.172 22.713 Atomic orbital electron populations 1.21760 0.95803 1.00973 1.01757 1.21897 0.95863 0.93432 1.04546 1.20929 0.91207 0.96318 0.89972 0.87109 1.45660 1.16553 1.57766 1.16494 1.20701 0.80996 0.77625 0.89864 1.90761 1.51792 1.59182 1.41693 1.20684 0.93779 1.02889 0.95948 1.19126 0.93168 0.93660 0.96371 1.20952 0.97248 0.95885 1.05798 1.21111 0.91835 0.99505 0.96652 1.21289 1.00427 0.95278 1.09608 1.19856 0.88711 0.91199 0.93913 1.83937 1.14089 1.38028 1.78053 1.21816 0.81917 1.00465 1.44754 0.88289 1.26594 1.03615 0.96448 0.95436 1.70190 1.32085 1.11725 1.42058 0.84586 0.74356 0.78505 0.78741 1.18890 1.19416 1.17655 1.20181 0.89870 1.00671 1.10128 1.20507 0.89993 0.76806 0.82077 1.43603 1.12447 1.60637 1.22485 1.90742 1.65939 1.47066 1.41885 0.94811 0.93184 0.92404 0.87455 0.90766 0.74620 0.86314 0.84427 0.83748 0.83801 0.86494 0.91875 0.87609 0.75360 0.74895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.51 71.98 0.61 -2.82 16 2 C -0.12 -1.79 5.55 30.60 0.17 -1.62 16 3 C 0.12 2.11 2.67 44.25 0.12 2.23 16 4 H 0.11 2.05 7.58 -2.39 -0.02 2.03 16 5 N -0.71 -14.33 4.90 -446.10 -2.19 -16.52 16 6 C 0.52 13.86 6.39 87.66 0.56 14.43 16 7 O -0.56 -19.53 13.17 -3.02 -0.04 -19.57 16 8 C -0.09 -2.30 5.83 29.10 0.17 -2.13 16 9 C -0.02 -0.80 4.37 -19.88 -0.09 -0.89 16 10 C -0.18 -6.02 9.70 22.30 0.22 -5.80 16 11 C -0.07 -2.69 10.04 22.25 0.22 -2.47 16 12 C -0.25 -11.45 9.17 22.39 0.21 -11.25 16 13 C 0.11 5.97 6.65 22.58 0.15 6.12 16 14 O -0.23 -14.73 9.76 -22.79 -0.22 -14.95 16 15 C -0.41 -25.00 9.49 67.92 0.64 -24.36 16 16 H 0.10 5.53 5.20 -2.91 -0.02 5.51 16 17 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 18 N -0.92 -58.04 13.67 21.61 0.30 -57.75 16 19 Si 1.02 44.10 29.55 68.60 2.03 46.13 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 23 C -0.19 -8.56 9.65 22.39 0.22 -8.34 16 24 C 0.52 7.96 7.49 87.66 0.66 8.62 16 25 N -0.83 -5.30 8.74 -173.53 -1.52 -6.82 16 26 O -0.58 -13.14 16.67 -3.03 -0.05 -13.19 16 27 H 0.03 1.00 5.65 -2.38 -0.01 0.99 16 28 H 0.05 1.30 7.85 -2.39 -0.02 1.28 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.11 0.86 7.44 -2.39 -0.02 0.84 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.42 7.25 7.79 -92.71 -0.72 6.53 16 33 H 0.12 2.52 8.08 -2.39 -0.02 2.50 16 34 H 0.14 2.37 8.08 -2.38 -0.02 2.35 16 35 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.12 5.49 5.64 -2.91 -0.02 5.47 16 38 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 40 H 0.41 1.77 8.93 -92.70 -0.83 0.94 16 41 H 0.42 0.37 8.20 -92.71 -0.76 -0.39 16 Total: -1.00 -85.51 347.99 1.42 -84.09 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -1.21 Total: 27.78 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 4.32 Total: -29.20 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -3.41 Total: -81.08 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.31 Total: -47.71 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -85.51 1.42 -84.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291457551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.567 kcal (2) G-P(sol) polarization free energy of solvation -85.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds