Wall clock time and date at job start Fri Apr 10 2020 17:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00049 * 2 1 4 4 C 1.52998 * 109.49630 * 300.06504 * 3 2 1 5 5 C 1.53038 * 109.52548 * 60.14564 * 3 2 1 6 6 C 1.53049 * 109.53520 * 58.60217 * 5 3 2 7 7 C 1.52761 * 109.38118 * 61.24312 * 6 5 3 8 8 N 1.46925 * 109.00629 * 305.58347 * 7 6 5 9 9 S 1.65595 * 120.63264 * 233.58452 * 8 7 6 10 10 O 1.42105 * 106.40149 * 23.26454 * 9 8 7 11 11 O 1.42098 * 106.40317 * 156.18327 * 9 8 7 12 12 N 1.65606 * 107.22013 * 269.72636 * 9 8 7 13 13 C 1.46489 * 120.00129 * 89.99663 * 12 9 8 14 14 C 1.46504 * 119.99819 * 269.99910 * 12 9 8 15 15 C 1.50693 * 109.47172 * 94.99586 * 14 12 9 16 16 H 1.08000 * 119.99929 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00099 * 179.97438 * 15 14 12 18 18 N 1.31521 * 120.00341 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00093 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47205 * 89.99726 * 19 17 15 21 21 H 1.48495 * 109.47322 * 209.99992 * 19 17 15 22 22 H 1.48502 * 109.47122 * 329.99662 * 19 17 15 23 23 C 1.46933 * 118.73831 * 53.31483 * 8 7 6 24 24 H 1.09003 * 109.46975 * 59.99753 * 1 2 3 25 25 H 1.08997 * 109.47251 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46869 * 300.00130 * 1 2 3 27 27 H 1.09002 * 109.47502 * 299.93338 * 4 3 2 28 28 H 1.08998 * 109.46996 * 59.93882 * 4 3 2 29 29 H 1.09007 * 109.47125 * 179.97438 * 4 3 2 30 30 H 1.08995 * 109.46475 * 178.62102 * 5 3 2 31 31 H 1.09001 * 109.46081 * 298.58524 * 5 3 2 32 32 H 1.09001 * 109.49446 * 181.32156 * 6 5 3 33 33 H 1.08996 * 109.49493 * 301.41142 * 6 5 3 34 34 H 1.08997 * 109.50533 * 185.70489 * 7 6 5 35 35 H 1.09000 * 109.43381 * 65.42166 * 7 6 5 36 36 H 1.08998 * 109.47302 * 90.00098 * 13 12 9 37 37 H 1.09005 * 109.47350 * 210.00090 * 13 12 9 38 38 H 1.08996 * 109.47412 * 330.00152 * 13 12 9 39 39 H 1.08996 * 109.47155 * 215.00149 * 14 12 9 40 40 H 1.09007 * 109.47086 * 334.99657 * 14 12 9 41 41 H 0.96998 * 120.00080 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.58300 * 66.42539 * 23 8 7 43 43 H 1.09000 * 109.58498 * 186.71002 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5578 2.0659 -1.2482 5 6 1.5623 2.0648 1.2510 6 6 1.9858 1.2883 2.5000 7 6 3.5081 1.1646 2.5282 8 7 3.9633 0.5697 1.2643 9 16 4.9325 -0.7731 1.2645 10 8 4.7138 -1.4255 2.5078 11 8 4.7379 -1.4086 0.0085 12 7 6.5019 -0.2449 1.2832 13 6 7.1838 -0.0199 2.5600 14 6 7.2083 -0.0027 0.0228 15 6 7.1001 1.4555 -0.3415 16 1 6.5595 2.1341 0.3017 17 6 7.6920 1.9236 -1.4954 18 7 7.5979 3.1964 -1.8132 19 14 8.6276 0.7501 -2.6076 20 1 7.6987 0.1746 -3.6132 21 1 9.7143 1.4864 -3.3018 22 1 9.2135 -0.3438 -1.7918 23 6 3.5374 1.1852 -0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8796 1.5262 -2.1390 28 1 0.4712 2.1512 -1.2477 29 1 2.0011 3.0618 -1.2476 30 1 2.0256 3.0513 1.2624 31 1 0.4778 2.1732 1.2411 32 1 1.6459 1.8178 3.3901 33 1 1.5426 0.2927 2.4770 34 1 3.8060 0.5268 3.3604 35 1 3.9502 2.1538 2.6466 36 1 7.6808 -0.9380 2.8733 37 1 7.9238 0.7718 2.4422 38 1 6.4544 0.2741 3.3147 39 1 8.2584 -0.2716 0.1373 40 1 6.7621 -0.6084 -0.7660 41 1 8.0140 3.5256 -2.6252 42 1 3.9820 2.1762 -0.0919 43 1 3.8570 0.5624 -0.8356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408336040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:07 Heat of formation + Delta-G solvation = -115.771578 kcal Electronic energy + Delta-G solvation = -26045.323121 eV Core-core repulsion = 22445.794255 eV Total energy + Delta-G solvation = -3599.528866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.63062 -36.69935 -36.08420 -35.57325 -35.16776 -32.44039 -32.08792 -31.62613 -28.38790 -27.22685 -26.34920 -25.14582 -24.14749 -21.96411 -21.78381 -19.73855 -18.28917 -17.41695 -16.83790 -16.74415 -16.20032 -15.59804 -15.31112 -15.16907 -14.67319 -14.11529 -13.87233 -13.74025 -13.44715 -13.13339 -13.02490 -12.65270 -12.50184 -12.37092 -12.15668 -11.95201 -11.79792 -11.75431 -11.68330 -11.39771 -11.33529 -11.18633 -11.13523 -10.85626 -10.70135 -10.58611 -10.46172 -10.19919 -10.04440 -9.59304 -9.35246 -8.65934 -8.56253 -8.04997 -6.16829 -4.16766 1.27317 3.26796 3.33309 3.37524 3.48395 3.93255 4.15345 4.35421 4.74215 4.80646 4.97535 5.04433 5.17027 5.22246 5.30036 5.35763 5.39764 5.51317 5.55547 5.64295 5.68308 5.73695 5.85226 5.92259 5.94347 6.00150 6.03002 6.14184 6.20250 6.24374 6.31838 6.42062 6.46460 6.59216 6.84551 6.95483 7.15057 7.41484 7.45796 7.56050 8.41109 8.86678 9.44674 10.95319 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.015209 B = 0.006625 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.555003 B = 4225.443548 C = 5057.195228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.367 6.367 3 C 0.101 3.899 4 C -0.177 4.177 5 C -0.140 4.140 6 C -0.126 4.126 7 C 0.122 3.878 8 N -0.994 5.994 9 S 2.791 3.209 10 O -0.997 6.997 11 O -0.975 6.975 12 N -0.995 5.995 13 C 0.106 3.894 14 C 0.212 3.788 15 C -0.539 4.539 16 H 0.081 0.919 17 C 0.077 3.923 18 N -0.894 5.894 19 Si 0.867 3.133 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.264 1.264 23 C 0.145 3.855 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.035 0.965 40 H 0.042 0.958 41 H 0.265 0.735 42 H 0.092 0.908 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 -1.159 6.534 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.286 6.286 3 C 0.060 3.940 4 C -0.235 4.235 5 C -0.178 4.178 6 C -0.165 4.165 7 C -0.004 4.004 8 N -0.832 5.832 9 S 2.800 3.200 10 O -0.982 6.982 11 O -0.959 6.959 12 N -0.835 5.835 13 C -0.040 4.040 14 C 0.089 3.911 15 C -0.578 4.578 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.532 5.532 19 Si 0.694 3.306 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.188 1.188 23 C 0.019 3.981 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.533 -2.112 6.393 13.354 hybrid contribution 0.431 0.346 -0.711 0.901 sum -11.101 -1.766 5.682 12.596 Atomic orbital electron populations 1.22750 0.82528 1.02209 0.99758 1.88077 1.18608 1.27125 1.94819 1.21942 0.94730 0.83438 0.93899 1.22352 1.01290 1.01441 0.98381 1.22071 1.00848 0.99711 0.95154 1.21695 0.96325 1.01233 0.97292 1.21238 0.94507 0.99121 0.85553 1.57915 1.65101 1.49163 1.10997 1.01609 0.72404 0.73301 0.72676 1.93516 1.85792 1.72969 1.45873 1.93552 1.85301 1.73185 1.43840 1.57537 1.29763 1.83604 1.12620 1.21229 0.97990 1.01031 0.83784 1.19601 0.93303 0.97777 0.80439 1.21447 1.35655 0.92533 1.08149 0.90069 1.24837 0.95610 0.94929 0.97273 1.69887 1.44533 1.13467 1.25312 0.86974 0.80361 0.81584 0.81671 1.19673 1.21072 1.18843 1.21371 0.89997 1.00904 0.85823 0.94050 0.90173 0.94154 0.91210 0.92299 0.90941 0.90575 0.91820 0.91215 0.91125 0.89533 0.91618 0.93755 0.90634 0.92708 0.94690 0.93966 0.92539 0.89006 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.21 101.05 1.03 1.31 16 2 O -0.37 -5.82 9.54 -35.23 -0.34 -6.16 16 3 C 0.10 1.47 0.73 -90.50 -0.07 1.41 16 4 C -0.18 -2.23 8.26 37.16 0.31 -1.93 16 5 C -0.14 -1.69 4.29 -26.69 -0.11 -1.81 16 6 C -0.13 -1.57 5.93 -26.83 -0.16 -1.73 16 7 C 0.12 1.76 6.45 -3.93 -0.03 1.74 16 8 N -0.99 -17.73 3.29 -113.76 -0.37 -18.10 16 9 S 2.79 57.57 6.11 -107.50 -0.66 56.92 16 10 O -1.00 -20.94 15.79 -57.17 -0.90 -21.84 16 11 O -0.97 -22.97 15.28 -57.17 -0.87 -23.85 16 12 N -0.99 -20.57 3.23 -123.06 -0.40 -20.96 16 13 C 0.11 1.82 10.31 59.84 0.62 2.44 16 14 C 0.21 5.00 4.48 -5.19 -0.02 4.97 16 15 C -0.54 -14.04 9.94 -34.44 -0.34 -14.39 16 16 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 17 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 19 Si 0.87 20.67 27.47 -169.99 -4.67 16.01 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 23 C 0.14 2.57 5.43 -3.71 -0.02 2.55 16 24 H 0.04 0.42 6.42 -51.93 -0.33 0.09 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.41 6.46 -51.93 -0.34 0.07 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.62 6.54 -51.93 -0.34 0.28 16 29 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.66 6.63 -51.93 -0.34 0.32 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.96 7.61 -51.93 -0.40 0.56 16 34 H 0.09 1.23 6.91 -51.93 -0.36 0.87 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 38 H 0.05 0.83 7.79 -51.93 -0.40 0.42 16 39 H 0.04 0.81 7.17 -51.93 -0.37 0.43 16 40 H 0.04 1.04 6.34 -51.92 -0.33 0.71 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 43 H 0.10 2.04 6.92 -51.93 -0.36 1.68 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -31.98 345.27 -8.09 -40.07 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.96 Total: 0.92 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 1.11 Total: -3.45 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 0.00 Total: -63.82 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -2.11 Total: -51.85 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.01 kcal Atomic # 16 Polarization: 57.57 SS G_CDS: -0.66 Total: 56.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.98 -8.09 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408336040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.704 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds