Wall clock time and date at job start Fri Apr 10 2020 17:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.46840 * 2 1 4 4 C 1.38923 * 120.02661 * 85.22263 * 3 2 1 5 5 O 1.35660 * 119.81842 * 359.95419 * 4 3 2 6 6 C 1.42899 * 117.00056 * 180.02562 * 5 4 3 7 7 C 1.39455 * 120.36519 * 180.23159 * 4 3 2 8 8 C 1.36411 * 120.41378 * 359.48236 * 7 4 3 9 9 C 1.40347 * 120.04001 * 0.51411 * 8 7 4 10 10 C 1.46377 * 120.17922 * 179.72086 * 9 8 7 11 11 N 1.30935 * 119.99705 * 180.02562 * 10 9 8 12 12 N 1.40105 * 119.99771 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99971 * 179.97438 * 12 11 10 14 14 O 1.22028 * 119.99992 * 359.97438 * 13 12 11 15 15 C 1.40369 * 120.00072 * 180.02562 * 13 12 11 16 16 H 1.08008 * 120.00043 * 359.97438 * 15 13 12 17 17 C 1.40169 * 120.00200 * 179.97438 * 15 13 12 18 18 N 1.30621 * 120.00248 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 120.00195 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47105 * 90.00126 * 19 17 15 21 21 H 1.48500 * 109.47395 * 210.00102 * 19 17 15 22 22 H 1.48496 * 109.47014 * 330.00274 * 19 17 15 23 23 C 1.38240 * 120.02311 * 265.19696 * 3 2 1 24 24 O 1.35644 * 120.20513 * 0.04843 * 23 3 2 25 25 C 1.42902 * 116.99722 * 272.95053 * 24 23 3 26 26 H 1.09004 * 109.47026 * 175.05086 * 1 2 3 27 27 H 1.08997 * 109.47632 * 295.05401 * 1 2 3 28 28 H 1.09003 * 109.47583 * 55.05536 * 1 2 3 29 29 H 1.09000 * 109.47286 * 239.99876 * 2 1 3 30 30 H 1.08992 * 109.47184 * 119.99885 * 2 1 3 31 31 H 1.09001 * 109.46978 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47303 * 59.99986 * 6 5 4 33 33 H 1.09002 * 109.46913 * 300.00038 * 6 5 4 34 34 H 1.07993 * 119.79246 * 179.72411 * 7 4 3 35 35 H 1.07997 * 119.98341 * 180.25979 * 8 7 4 36 36 H 1.08002 * 119.99795 * 0.02562 * 10 9 8 37 37 H 0.96998 * 119.99836 * 359.97438 * 12 11 10 38 38 H 0.96997 * 120.00789 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.46952 * 64.77878 * 25 24 23 40 40 H 1.09001 * 109.46847 * 184.77655 * 25 24 23 41 41 H 1.08998 * 109.47160 * 304.77228 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.1695 2.1097 1.1986 5 8 1.8494 1.5001 2.3675 6 6 2.0129 2.2643 3.5638 7 6 2.6290 3.4263 1.2064 8 6 2.9590 4.0495 0.0387 9 6 2.8270 3.3698 -1.1821 10 6 3.1745 4.0377 -2.4374 11 7 3.0495 3.4004 -3.5744 12 7 3.3825 4.0394 -4.7759 13 6 3.2544 3.3833 -5.9462 14 8 2.8487 2.2325 -5.9592 15 6 3.5885 4.0233 -7.1499 16 1 3.9480 5.0418 -7.1384 17 6 3.4558 3.3408 -8.3670 18 7 3.0206 2.1093 -8.3811 19 14 3.8998 4.1928 -9.9690 20 1 5.3329 3.9535 -10.2762 21 1 3.0608 3.6500 -11.0675 22 1 3.6589 5.6521 -9.8368 23 6 2.3573 2.0396 -1.1927 24 8 2.2248 1.3721 -2.3661 25 6 3.3343 0.5769 -2.7888 26 1 -0.3633 -1.0239 -0.0887 27 1 -0.3634 0.4352 0.9309 28 1 -0.3634 0.5886 -0.8424 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.7228 1.6600 4.4234 32 1 1.3845 3.1536 3.5157 33 1 3.0566 2.5619 3.6649 34 1 2.7280 3.9546 2.1431 35 1 3.3182 5.0679 0.0532 36 1 3.5339 5.0561 -2.4258 37 1 3.7053 4.9540 -4.7655 38 1 2.9290 1.6367 -9.2232 39 1 3.4873 -0.2385 -2.0818 40 1 3.1313 0.1667 -3.7781 41 1 4.2306 1.1959 -2.8292 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408719671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:15 Heat of formation + Delta-G solvation = -67.458460 kcal Electronic energy + Delta-G solvation = -25054.139181 eV Core-core repulsion = 21321.261377 eV Total energy + Delta-G solvation = -3732.877803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53588 -39.82664 -39.41043 -37.48013 -36.71219 -35.11102 -34.62217 -32.75644 -30.50971 -30.30929 -28.70829 -27.95553 -27.62642 -24.83622 -24.31467 -22.52095 -21.76076 -21.13163 -19.42846 -19.20051 -18.35076 -17.60951 -17.25189 -16.86715 -16.78770 -16.32280 -16.16223 -15.81568 -15.43977 -15.07867 -14.85820 -14.69749 -14.66011 -14.12689 -13.88855 -13.51316 -13.41151 -13.25725 -13.14170 -12.83710 -12.69592 -12.60194 -12.52128 -12.47940 -12.03163 -11.92721 -11.75788 -11.57670 -11.05734 -10.97443 -10.57765 -9.88955 -9.87509 -9.59901 -8.54583 -8.39542 -7.06269 -0.09887 0.28914 1.37826 1.38767 1.56759 1.59159 2.10811 2.27832 2.40714 2.44506 2.67217 3.19062 3.65878 3.70952 3.81178 3.97581 4.19122 4.23077 4.33733 4.40183 4.45531 4.49589 4.50277 4.51611 4.54012 4.62114 4.82621 4.85346 4.97621 5.00682 5.05847 5.12212 5.19926 5.32554 5.35921 5.45783 5.51814 5.64706 5.85164 6.06634 6.44127 6.70383 6.71809 7.04128 7.52128 8.44622 8.65493 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.029370 B = 0.003159 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.123846 B = 8862.548388 C = 9600.411241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 C -0.159 4.159 4 C 0.149 3.851 5 O -0.323 6.323 6 C 0.015 3.985 7 C -0.205 4.205 8 C -0.037 4.037 9 C -0.117 4.117 10 C 0.050 3.950 11 N -0.231 5.231 12 N -0.600 5.600 13 C 0.546 3.454 14 O -0.607 6.607 15 C -0.563 4.563 16 H 0.091 0.909 17 C 0.031 3.969 18 N -0.799 5.799 19 Si 1.007 2.993 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.247 1.247 23 C 0.136 3.864 24 O -0.331 6.331 25 C 0.075 3.925 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.140 0.860 37 H 0.379 0.621 38 H 0.280 0.720 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 4.032 22.827 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 C -0.160 4.160 4 C 0.102 3.898 5 O -0.236 6.236 6 C -0.079 4.079 7 C -0.224 4.224 8 C -0.058 4.058 9 C -0.120 4.120 10 C -0.159 4.159 11 N -0.039 5.039 12 N -0.345 5.345 13 C 0.355 3.645 14 O -0.491 6.491 15 C -0.600 4.600 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.427 5.427 19 Si 0.825 3.175 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.170 1.170 23 C 0.089 3.911 24 O -0.247 6.247 25 C -0.019 4.019 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.188 0.812 35 H 0.185 0.815 36 H 0.157 0.843 37 H 0.216 0.784 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.201 2.053 22.006 22.102 hybrid contribution 0.731 1.489 -0.667 1.788 sum 0.932 3.542 21.339 21.651 Atomic orbital electron populations 1.21611 0.94386 1.01954 1.01232 1.20238 0.96665 0.91394 1.02336 1.19549 1.07788 0.98703 0.90007 1.18914 0.94203 0.91381 0.85319 1.86004 1.81481 1.42624 1.13488 1.23432 1.02764 0.97779 0.83951 1.21234 1.06617 0.93856 1.00664 1.20977 0.95475 1.00513 0.88805 1.19100 1.06067 0.94259 0.92574 1.24492 1.02277 0.98754 0.90332 1.75409 1.09508 1.25819 0.93122 1.47477 1.68583 1.15441 1.02988 1.17031 0.79262 0.86269 0.81918 1.90674 1.52085 1.19968 1.86421 1.20221 1.46863 1.02109 0.90774 0.89062 1.27097 0.91774 0.94878 1.05017 1.70190 1.31394 1.11867 1.29268 0.84884 0.79062 0.79328 0.74188 1.18235 1.19496 1.17002 1.18929 0.96302 0.90813 0.85034 1.85994 1.39305 1.63418 1.35997 1.22513 0.87685 0.92566 0.99152 0.91297 0.91947 0.94810 0.92345 0.89756 0.86396 0.91281 0.91176 0.81195 0.81460 0.84349 0.78357 0.90961 0.92075 0.91457 0.95553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.89 71.98 0.71 -2.78 16 2 C -0.07 -1.90 5.61 29.85 0.17 -1.74 16 3 C -0.16 -4.74 5.16 -19.70 -0.10 -4.84 16 4 C 0.15 3.49 6.68 22.73 0.15 3.64 16 5 O -0.32 -6.25 9.60 -89.76 -0.86 -7.12 16 6 C 0.01 0.14 9.80 113.37 1.11 1.25 16 7 C -0.21 -3.81 8.96 22.14 0.20 -3.61 16 8 C -0.04 -0.80 9.74 22.36 0.22 -0.58 16 9 C -0.12 -3.74 5.90 -19.95 -0.12 -3.86 16 10 C 0.05 1.83 10.75 86.95 0.93 2.76 16 11 N -0.23 -11.04 8.04 -52.41 -0.42 -11.47 16 12 N -0.60 -30.35 6.26 -180.68 -1.13 -31.48 16 13 C 0.55 33.54 7.64 84.76 0.65 34.19 16 14 O -0.61 -42.92 15.19 -5.41 -0.08 -43.00 16 15 C -0.56 -32.27 9.24 23.26 0.21 -32.06 16 16 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 17 C 0.03 1.72 5.50 85.34 0.47 2.19 16 18 N -0.80 -48.98 11.70 21.86 0.26 -48.73 16 19 Si 1.01 40.22 29.56 68.60 2.03 42.25 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 22 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 23 C 0.14 4.88 5.72 22.97 0.13 5.01 16 24 O -0.33 -14.48 7.85 -89.58 -0.70 -15.18 16 25 C 0.07 3.09 10.01 113.37 1.14 4.22 16 26 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.75 5.90 -2.39 -0.01 1.74 16 30 H 0.08 2.02 7.68 -2.39 -0.02 2.00 16 31 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.49 7.63 -2.39 -0.02 0.47 16 33 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 34 H 0.17 1.74 6.26 -2.91 -0.02 1.72 16 35 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.14 3.85 8.04 -2.91 -0.02 3.83 16 37 H 0.38 15.98 8.62 -213.32 -1.84 14.14 16 38 H 0.28 15.37 8.29 -92.71 -0.77 14.60 16 39 H 0.06 2.03 6.98 -2.39 -0.02 2.02 16 40 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.03 1.12 7.83 -2.39 -0.02 1.10 16 Total: -1.00 -85.57 351.61 4.18 -81.38 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.78 Total: 29.53 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.87 Total: 3.81 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -1.30 Total: -91.67 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -1.65 Total: -65.29 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -85.57 4.18 -81.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408719671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.926 kcal (2) G-P(sol) polarization free energy of solvation -85.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds